Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89346 件

3J7Y
DownloadVisualize
BU of 3j7y by Molmil
Structure of the large ribosomal subunit from human mitochondria
分子名称: 16S rRNA, ADENOSINE MONOPHOSPHATE, CRIF1, ...
著者Brown, A, Amunts, A, Bai, X.C, Sugimoto, Y, Edwards, P.C, Murshudov, G, Scheres, S.H.W, Ramakrishnan, V.
登録日2014-08-26
公開日2014-10-15
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure of the large ribosomal subunit from human mitochondria.
Science, 346, 2014
3NYQ
DownloadVisualize
BU of 3nyq by Molmil
Malonyl-CoA Ligase Ternary Product Complex with Methylmalonyl-CoA and AMP bound
分子名称: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
著者Hughes, A.J, Keatinge-Clay, A.T.
登録日2010-07-15
公開日2011-03-30
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Enzymatic Extender Unit Generation for In Vitro Polyketide Synthase Reactions: Structural and Functional Showcasing of Streptomyces coelicolor MatB.
Chem.Biol., 18, 2011
5WZ4
DownloadVisualize
BU of 5wz4 by Molmil
Crystal structure of Mycobacterium tuberculosis VapC20 (Rv2549c), Sarcin-Ricin loop cleaving toxin
分子名称: 23S rRNA-specific endonuclease VapC20
著者Thakur, K.G, Deep, A.
登録日2017-01-17
公開日2017-10-25
最終更新日2023-03-01
実験手法X-RAY DIFFRACTION (1.775 Å)
主引用文献Crystal structure of Mycobacterium tuberculosis VapC20 toxin and its interactions with cognate antitoxin, VapB20, suggest a model for toxin-antitoxin assembly.
FEBS J., 284, 2017
6U98
DownloadVisualize
BU of 6u98 by Molmil
Hsp90a NTD K58R bound reversibly to sulfonyl fluoride 6
分子名称: 3-{[(3R)-3-({6-amino-8-[(6-iodo-2H-1,3-benzodioxol-5-yl)sulfanyl]-9H-purin-9-yl}methyl)piperidin-1-yl]methyl}benzene-1-sulfonyl fluoride, Heat shock protein HSP 90-alpha, POTASSIUM ION, ...
著者Cuesta, A, Wan, X, Taunton, J.
登録日2019-09-06
公開日2020-02-19
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Ligand Conformational Bias Drives Enantioselective Modification of a Surface-Exposed Lysine on Hsp90.
J.Am.Chem.Soc., 142, 2020
3NZ2
DownloadVisualize
BU of 3nz2 by Molmil
Crystal Structure of Hexapeptide-Repeat containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A from Vibrio cholerae O1 biovar eltor
分子名称: 1,4-BUTANEDIOL, ACETIC ACID, ACETYL COENZYME *A, ...
著者Kim, Y, Maltseva, N, Hasseman, J, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2010-07-15
公開日2010-08-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal Structure of Hexapeptide-Repeat containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A from Vibrio cholerae O1 biovar eltor
To be Published
6U9B
DownloadVisualize
BU of 6u9b by Molmil
Hsp90a NTD covalently bound to sulfonyl fluoride 5 at K58
分子名称: 3-{[(3S)-3-({6-amino-8-[(6-iodo-2H-1,3-benzodioxol-5-yl)sulfanyl]-9H-purin-9-yl}methyl)piperidin-1-yl]methyl}benzene-1-sulfonyl fluoride, Heat shock protein HSP 90-alpha
著者Cuesta, A, Wan, X, Taunton, J.
登録日2019-09-07
公開日2020-02-19
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Ligand Conformational Bias Drives Enantioselective Modification of a Surface-Exposed Lysine on Hsp90.
J.Am.Chem.Soc., 142, 2020
6GKC
DownloadVisualize
BU of 6gkc by Molmil
2 minute Fe2+ soak structure of SynFtn
分子名称: FE (III) ION, Ferritin
著者Hemmings, A.M, Bradley, J.M.
登録日2018-05-18
公開日2019-01-23
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Reaction of O2with a diiron protein generates a mixed-valent Fe2+/Fe3+center and peroxide.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
6CYO
DownloadVisualize
BU of 6cyo by Molmil
Crystal structure of human UBE2A (RAD6A)
分子名称: Ubiquitin-conjugating enzyme E2 A
著者Ranzani, A.T, de Oliveira, J.F.
登録日2018-04-06
公開日2018-12-12
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Mechanistic insights revealed by a UBE2A mutation linked to intellectual disability.
Nat. Chem. Biol., 15, 2019
6GLB
DownloadVisualize
BU of 6glb by Molmil
Crystal structure of JAK3 in complex with Compound 20 (FM484)
分子名称: 1,2-ETHANEDIOL, 1-phenylurea, 3-[5-(3-cyclohexyl-3,5,8,10-tetrazatricyclo[7.3.0.0^{2,6}]dodeca-1(9),2(6),4,7,11-pentaen-4-yl)furan-2-yl]propanenitrile, ...
著者Chaikuad, A, Forster, M, von Delft, F, Edwards, A.M, Arrowsmith, C.H, Bountra, C, Laufer, S.A, Knapp, S, Structural Genomics Consortium (SGC)
登録日2018-05-23
公開日2018-06-27
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Development, Optimization, and Structure-Activity Relationships of Covalent-Reversible JAK3 Inhibitors Based on a Tricyclic Imidazo[5,4- d]pyrrolo[2,3- b]pyridine Scaffold.
J. Med. Chem., 61, 2018
1CRH
DownloadVisualize
BU of 1crh by Molmil
THE ROLE OF A CONSERVED INTERNAL WATER MOLECULE AND ITS ASSOCIATED HYDROGEN BOND NETWORK IN CYTOCHROME C
分子名称: CYTOCHROME C, HEME C, SULFATE ION
著者Berghuis, A.M, Brayer, G.D.
登録日1993-08-06
公開日1994-01-31
最終更新日2021-03-03
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The role of a conserved internal water molecule and its associated hydrogen bond network in cytochrome c.
J.Mol.Biol., 236, 1994
5KSE
DownloadVisualize
BU of 5kse by Molmil
Flap endonuclease 1 (FEN1) R100A with 5'-flap substrate DNA and Sm3+
分子名称: DNA (5'-D(*AP*CP*CP*GP*TP*CP*C)-3'), DNA (5'-D(*AP*CP*TP*CP*TP*GP*CP*CP*TP*CP*AP*AP*GP*AP*CP*GP*GP*T)-3'), DNA (5'-D(P*TP*AP*AP*TP*TP*GP*AP*GP*GP*CP*AP*GP*AP*GP*T)-3'), ...
著者Tsutakawa, S.E, Arvai, A.S, Tainer, J.A.
登録日2016-07-08
公開日2017-06-28
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.105 Å)
主引用文献Phosphate steering by Flap Endonuclease 1 promotes 5'-flap specificity and incision to prevent genome instability.
Nat Commun, 8, 2017
5L79
DownloadVisualize
BU of 5l79 by Molmil
Crystal structure of MMP12 in complex with RXP470.1 conjugated with fluorophore Cy5,5 in space group P21212.
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CY5.5-PEG2, ...
著者Tepshi, L, Bordenave, T, Devel, L, Dive, V, Stura, E.A.
登録日2016-06-02
公開日2016-09-14
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Synthesis and in Vitro and in Vivo Evaluation of MMP-12 Selective Optical Probes.
Bioconjug.Chem., 27, 2016
4ZYP
DownloadVisualize
BU of 4zyp by Molmil
Crystal Structure of Motavizumab and Quaternary-Specific RSV-Neutralizing Human Antibody AM14 in Complex with Prefusion RSV F Glycoprotein
分子名称: AM14 antibody Fab heavy chain, AM14 antibody light chain, Fusion glycoprotein F0,Fibritin, ...
著者Gilman, M.S.A, McLellan, J.S.
登録日2015-05-21
公開日2015-07-29
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (5.5 Å)
主引用文献Characterization of a Prefusion-Specific Antibody That Recognizes a Quaternary, Cleavage-Dependent Epitope on the RSV Fusion Glycoprotein.
Plos Pathog., 11, 2015
6H6V
DownloadVisualize
BU of 6h6v by Molmil
Structure of the UbiD-class enzyme HmfF from Pelotomaculum thermopropionicum in complex with FMN
分子名称: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases, CALCIUM ION, FLAVIN MONONUCLEOTIDE, ...
著者Payne, K.A.P, Leys, D.
登録日2018-07-30
公開日2019-02-27
最終更新日2019-05-15
実験手法X-RAY DIFFRACTION (2.66 Å)
主引用文献Enzymatic Carboxylation of 2-Furoic Acid Yields 2,5-Furandicarboxylic Acid (FDCA).
Acs Catalysis, 9, 2019
6CCX
DownloadVisualize
BU of 6ccx by Molmil
NMR data-driven model of GTPase KRas-GMPPNP:Cmpd2 complex tethered to a nanodisc
分子名称: (2R,4S)-4-[(5-bromo-1H-indole-3-carbonyl)amino]-2-[(4-chlorophenyl)methyl]piperidin-1-ium, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, ...
著者Fang, Z, Marshall, C.B, Nishikawa, T, Gossert, A.D, Jansen, J.M, Jahnke, W, Ikura, M.
登録日2018-02-07
公開日2018-09-05
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Inhibition of K-RAS4B by a Unique Mechanism of Action: Stabilizing Membrane-Dependent Occlusion of the Effector-Binding Site.
Cell Chem Biol, 25, 2018
5KUR
DownloadVisualize
BU of 5kur by Molmil
Human cyclophilin A at 100K, Data set 5
分子名称: Peptidyl-prolyl cis-trans isomerase A
著者Russi, S, Gonzalez, A, Kenner, L.R, Keedy, D.A, Fraser, J.S, van den Bedem, H.
登録日2016-07-13
公開日2016-09-07
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Conformational variation of proteins at room temperature is not dominated by radiation damage.
J Synchrotron Radiat, 24, 2017
6GPK
DownloadVisualize
BU of 6gpk by Molmil
Crystal structure of human GDP-D-mannose 4,6-dehydratase (E157Q) in complex with GDP-Man
分子名称: 1,2-ETHANEDIOL, GDP-mannose 4,6 dehydratase, GLYCEROL, ...
著者Pfeiffer, M, Krojer, T, Johansson, C, von Delft, F, Bountra, C, Arrowsmith, C.H, Edwards, A, Nidetzky, B, Oppermann, U, Structural Genomics Consortium (SGC)
登録日2018-06-06
公開日2018-07-18
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献A Parsimonious Mechanism of Sugar Dehydration by Human GDP-Mannose-4,6-dehydratase.
Acs Catalysis, 9, 2019
5KUO
DownloadVisualize
BU of 5kuo by Molmil
Human cyclophilin A at 100K, Data set 3
分子名称: Peptidyl-prolyl cis-trans isomerase A
著者Russi, S, Gonzalez, A, Kenner, L.R, Keedy, D.A, Fraser, J.S, van den Bedem, H.
登録日2016-07-13
公開日2016-08-31
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Conformational variation of proteins at room temperature is not dominated by radiation damage.
J Synchrotron Radiat, 24, 2017
6GFH
DownloadVisualize
BU of 6gfh by Molmil
Inositol 1,3,4,5,6-pentakisphosphate 2-kinase from A. thaliana in complex with neo-IP5 and ATP
分子名称: 1,2-ETHANEDIOL, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Whitfield, H.L, Brearley, C.A, Hemmings, A.M.
登録日2018-04-30
公開日2018-09-12
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献A Fluorescent Probe Identifies Active Site Ligands of Inositol Pentakisphosphate 2-Kinase.
J. Med. Chem., 61, 2018
3O5D
DownloadVisualize
BU of 3o5d by Molmil
Crystal structure of a fragment of FKBP51 comprising the Fk1 and Fk2 domains
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP5
著者Bracher, A, Kozany, C, Thost, A.-K, Hausch, F.
登録日2010-07-28
公開日2011-06-01
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Structural characterization of the PPIase domain of FKBP51, a cochaperone of human Hsp90.
Acta Crystallogr.,Sect.D, 67, 2011
5KUV
DownloadVisualize
BU of 5kuv by Molmil
Human cyclophilin A at 100K, Data set 8
分子名称: Peptidyl-prolyl cis-trans isomerase A
著者Russi, S, Gonzalez, A, Kenner, L.R, Keedy, D.A, Fraser, J.S, van den Bedem, H.
登録日2016-07-13
公開日2016-08-10
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Conformational variation of proteins at room temperature is not dominated by radiation damage.
J Synchrotron Radiat, 24, 2017
5WGY
DownloadVisualize
BU of 5wgy by Molmil
Crystal Structure of MalA' C112S/C128S, malbrancheamide B complex
分子名称: (5aS,12aS,13aS)-9-chloro-12,12-dimethyl-2,3,11,12,12a,13-hexahydro-1H,5H,6H-5a,13a-(epiminomethano)indolizino[7,6-b]carbazol-14-one, CADMIUM ION, CHLORIDE ION, ...
著者Fraley, A.E, Smith, J.L.
登録日2017-07-14
公開日2017-08-16
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Function and Structure of MalA/MalA', Iterative Halogenases for Late-Stage C-H Functionalization of Indole Alkaloids.
J. Am. Chem. Soc., 139, 2017
5KV3
DownloadVisualize
BU of 5kv3 by Molmil
Human cyclophilin A at 278K, Data set 5
分子名称: Peptidyl-prolyl cis-trans isomerase A
著者Russi, S, Gonzalez, A, Kenner, L.R, Keedy, D.A, Fraser, J.S, van den Bedem, H.
登録日2016-07-13
公開日2016-08-10
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Conformational variation of proteins at room temperature is not dominated by radiation damage.
J Synchrotron Radiat, 24, 2017
6TX0
DownloadVisualize
BU of 6tx0 by Molmil
Crystal structure of tetrameric human D137N-SAMHD1 (residues 109-626) with XTP, dAMPNPP and Mg
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, FE (III) ION, ...
著者Morris, E.R, Kunzelmann, S, Caswell, S.J, Arnold, L.H, Purkiss, A.G, Kelly, G, Taylor, I.A.
登録日2020-01-13
公開日2020-06-24
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Crystal structures of SAMHD1 inhibitor complexes reveal the mechanism of water-mediated dNTP hydrolysis.
Nat Commun, 11, 2020
3O76
DownloadVisualize
BU of 3o76 by Molmil
1.8 Angstroms molecular structure of mouse liver glutathione S-transferase mutant C47A complexed with S-(P-nitrobenzyl)glutathione
分子名称: Glutathione S-transferase P 1, S-(P-NITROBENZYL)GLUTATHIONE
著者Canals, A, Coll, M.
登録日2010-07-30
公開日2011-06-15
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Site-directed mutagenesis of mouse glutathione transferase P1-1 unlocks masked cooperativity, introduces a novel mechanism for 'ping pong' kinetic behaviour, and provides further structural evidence for participation of a water molecule in proton abstraction from glutathione.
Febs J., 278, 2011

225946

件を2024-10-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon