Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 88608 件

7AJA
DownloadVisualize
BU of 7aja by Molmil
Structure of DYRK1A in complex with compound 28
分子名称: 1-[4-(1-benzofuran-5-yl)pyridin-2-yl]piperazine, CHLORIDE ION, Dual specificity tyrosine-phosphorylation-regulated kinase 1A
著者Dokurno, P, Surgenor, A.E, Kotschy, A.
登録日2020-09-28
公開日2021-05-26
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure-Guided Discovery of Potent and Selective DYRK1A Inhibitors.
J.Med.Chem., 64, 2021
6VPB
DownloadVisualize
BU of 6vpb by Molmil
A novel membrane-bound 6-phosphogluconate dehydrogenase from the acetic acid bacteria Gluconacetobacter diazotrophicus (Gd6PGD)
分子名称: 6-phosphogluconate dehydrogenase, DI(HYDROXYETHYL)ETHER, ISOPROPYL ALCOHOL, ...
著者Rodriguez-Romero, A, Rodriguez-Hernandez, A.
登録日2020-02-02
公開日2020-07-22
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献The structure of a novel membrane-associated 6-phosphogluconate dehydrogenase from Gluconacetobacter diazotrophicus (Gd6PGD) reveals a subfamily of short-chain 6PGDs.
Febs J., 288, 2021
7AJW
DownloadVisualize
BU of 7ajw by Molmil
Structure of DYRK1A in complex with compound 46
分子名称: 4-[2-methyl-3-(2-phenoxyethyl)imidazo[4,5-b]pyridin-5-yl]pyridine-2,6-diamine, CHLORIDE ION, Dual specificity tyrosine-phosphorylation-regulated kinase 1A
著者Dokurno, P, Surgenor, A.E, Kotschy, A.
登録日2020-09-29
公開日2021-05-26
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure-Guided Discovery of Potent and Selective DYRK1A Inhibitors.
J.Med.Chem., 64, 2021
5K97
DownloadVisualize
BU of 5k97 by Molmil
Flap endonuclease 1 (FEN1) D233N with cleaved product fragment and Sm3+
分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*AP*CP*CP*GP*TP*CP*C)-3'), DNA (5'-D(*AP*CP*TP*CP*TP*GP*CP*CP*TP*CP*AP*AP*GP*AP*CP*GP*GP*T)-3'), ...
著者Tsutakawa, S.E, Arvai, A.S, Tainer, J.A.
登録日2016-05-31
公開日2017-06-28
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.102 Å)
主引用文献Phosphate steering by Flap Endonuclease 1 promotes 5'-flap specificity and incision to prevent genome instability.
Nat Commun, 8, 2017
6VPQ
DownloadVisualize
BU of 6vpq by Molmil
Crystal structure of the C-terminal domain of DENR
分子名称: ACETATE ION, CALCIUM ION, Density-regulated protein, ...
著者Lomakin, I.B, Steitz, T.A.
登録日2020-02-04
公開日2020-04-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Crystal structure of the C-terminal domain of DENR.
Comput Struct Biotechnol J, 18, 2020
4V7G
DownloadVisualize
BU of 4v7g by Molmil
Crystal Structure of Lumazine Synthase from Bacillus Anthracis
分子名称: 6,7-dimethyl-8-ribityllumazine synthase, PHOSPHATE ION
著者Morgunova, E, Illarionov, B, Saller, S, Popov, A, Sambaiah, T, Bacher, A, Cushman, M, Fischer, M, Ladenstein, R.
登録日2009-09-16
公開日2014-07-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structural study and thermodynamic characterization of inhibitor binding to lumazine synthase from Bacillus anthracis.
Acta Crystallogr.,Sect.D, 66, 2010
2VKO
DownloadVisualize
BU of 2vko by Molmil
Structure of the soluble domain of the membrane protein TM1634 from Thermotoga maritima
分子名称: HEXAETHYLENE GLYCOL, TETRAETHYLENE GLYCOL, TM1634
著者McCleverty, C.J, Columbus, L, Kreusch, A, Lesley, S.A, Joint Center for Structural Genomics (JCSG)
登録日2007-12-20
公開日2008-04-08
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Structure and Ligand Binding of the Soluble Domain of a Thermotoga Maritima Membrane Protein of Unknown Function Tm1634.
Protein Sci., 17, 2008
4I4L
DownloadVisualize
BU of 4i4l by Molmil
Crystal Structure of Nucleotide-Bound W-W-W ClpX Hexamer
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent Clp protease ATP-binding subunit ClpX, SULFATE ION
著者Glynn, S.E, Nager, A.R, Stinson, B.S, Schmitz, K.R, Baker, T.A, Sauer, R.T.
登録日2012-11-27
公開日2013-05-15
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.6981 Å)
主引用文献Nucleotide Binding and Conformational Switching in the Hexameric Ring of a AAA+ Machine.
Cell(Cambridge,Mass.), 153, 2013
7AIQ
DownloadVisualize
BU of 7aiq by Molmil
Structure of Human Potassium Chloride Transporter KCC1 in NaCl (Subclass 1)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Solute carrier family 12 member 4, ...
著者Ebenhoch, R, Chi, G, Man, H, Wang, D, McKinley, G, Mukhopadhyay, S.M.M, MacLean, E.M, Chalk, R, Moreau, C, Snee, M, Bohstedt, T, Singh, N.K, Abrusci, P, Liko, I, Tehan, B.G, Almeida, F.G, Arrowsmith, C.H, Tang, H, Robinson, C.V, Bountra, C, Edwards, A.M, Marsden, B.D, Burgess-Brown, N.A, Duerr, K.L, Structural Genomics Consortium (SGC)
登録日2020-09-28
公開日2021-06-02
最終更新日2021-07-28
実験手法ELECTRON MICROSCOPY (3.72 Å)
主引用文献Phospho-regulation, nucleotide binding and ion access control in potassium-chloride cotransporters.
Embo J., 40, 2021
3WCQ
DownloadVisualize
BU of 3wcq by Molmil
Crystal structure analysis of Cyanidioschyzon melorae ferredoxin D58N mutant
分子名称: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin
著者Ueno, Y, Matsumoto, T, Yamano, A, Imai, T, Morimoto, Y.
登録日2013-05-31
公開日2013-08-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (0.97 Å)
主引用文献Increasing the electron-transfer ability of Cyanidioschyzon merolae ferredoxin by a one-point mutation - A high resolution and Fe-SAD phasing crystal structure analysis of the Asp58Asn mutant
Biochem.Biophys.Res.Commun., 436, 2013
7ZH7
DownloadVisualize
BU of 7zh7 by Molmil
Cryo-EM structure of ex vivo AA amyloid from renal tissue of a short hair cat deceased in a shelter
分子名称: Serum amyloid A protein
著者Schulte, T, Chaves-Sanjuan, A, Ricagno, S.
登録日2022-04-05
公開日2022-11-30
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Cryo-EM structure of ex vivo fibrils associated with extreme AA amyloidosis prevalence in a cat shelter.
Nat Commun, 13, 2022
6VV1
DownloadVisualize
BU of 6vv1 by Molmil
Crystal structure of Eis from Mycobacterium tuberculosis in complex with inhibitor SGT384
分子名称: 2-[(4-amino-6,7-dihydro-5H-cyclopenta[4,5]thieno[2,3-d]pyrimidin-2-yl)sulfanyl]-N-[2-(piperidin-1-yl)ethyl]acetamide, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
著者Punetha, A, Hou, C, Ngo, H.X, Garneau-Tsodikova, S, Tsodikov, O.V.
登録日2020-02-16
公開日2020-06-03
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis fromMycobacterium tuberculosis.
Acs Chem.Biol., 15, 2020
4W4T
DownloadVisualize
BU of 4w4t by Molmil
The crystal structure of the terminal R domain from the myxalamid PKS-NRPS biosynthetic pathway
分子名称: ACETATE ION, MxaA
著者Tsai, S.C, Keasling, J.D, Luo, R, Barajas, J.F, Phelan, R.M, Schaub, A.J, Kliewer, J.
登録日2014-08-15
公開日2015-08-12
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.845 Å)
主引用文献Comprehensive Structural and Biochemical Analysis of the Terminal Myxalamid Reductase Domain for the Engineered Production of Primary Alcohols.
Chem.Biol., 22, 2015
1SSV
DownloadVisualize
BU of 1ssv by Molmil
Compensating bends in a 16 base-pair DNA oligomer containing a T3A3 segment
分子名称: 5'-D(*CP*GP*AP*GP*GP*TP*TP*TP*AP*AP*AP*CP*CP*TP*CP*G)-3'
著者McAteer, K, Aceves-Gaona, A, Michalczyk, R, Buchko, G.W, Isern, N.G, Silks, L.A, Miller, J.H, Kennedy, M.A.
登録日2004-03-24
公開日2004-12-07
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Compensating bends in a 16-base-pair DNA oligomer containing a T(3)A(3) segment: A NMR study of global DNA curvature
Biopolymers, 75, 2004
5DG9
DownloadVisualize
BU of 5dg9 by Molmil
CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA INSERTING dGMPNPP ACROSS A DNA TEMPLATE CONTAINING 1,N6-ETHENODEOXYADENOSINE LESION
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(EDA)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ...
著者Patra, A, Egli, M.
登録日2015-08-27
公開日2016-06-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structural and Kinetic Analysis of Miscoding Opposite the DNA Adduct 1,N6-Ethenodeoxyadenosine by Human Translesion DNA Polymerase eta.
J.Biol.Chem., 291, 2016
4ICM
DownloadVisualize
BU of 4icm by Molmil
Crystal structure of 5-carboxyvanillate decarboxylase LigW from Sphingomonas paucimobilis
分子名称: 5-carboxyvanillate decarboxylase, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Fedorov, A.A, Fedorov, E.V, Vladimirova, A, Raushel, F.M, Almo, S.C.
登録日2012-12-10
公開日2013-12-11
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.825 Å)
主引用文献Crystal structure of 5-carboxyvanillate decarboxylase LigW from Sphingomonas paucimobilis
To be Published
6VWW
DownloadVisualize
BU of 6vww by Molmil
Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2.
分子名称: ACETIC ACID, CHLORIDE ION, GLYCEROL, ...
著者Kim, Y, Jedrzejczak, R, Maltseva, N, Endres, M, Godzik, A, Michalska, K, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2020-02-20
公開日2020-03-04
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of Nsp15 endoribonuclease NendoU from SARS-CoV-2.
Protein Sci., 29, 2020
2V51
DownloadVisualize
BU of 2v51 by Molmil
Structure of MAL-RPEL1 complexed to actin
分子名称: ACTIN, ALPHA SKELETAL MUSCLE, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Mouilleron, S, Guettler, S, Langer, C.A, Treisman, R, McDonald, N.Q.
登録日2008-10-01
公開日2008-11-25
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Molecular basis for G-actin binding to RPEL motifs from the serum response factor coactivator MAL.
EMBO J., 27, 2008
5VA6
DownloadVisualize
BU of 5va6 by Molmil
CRYSTAL STRUCTURE OF ATXR5 IN COMPLEX WITH HISTONE H3.1 MONO-METHYLATED ON R26
分子名称: Histone H3.1, Probable Histone-lysine N-methyltransferase ATXR5, S-ADENOSYL-L-HOMOCYSTEINE
著者Bergamin, E, Sarvan, S, Malette, J, Eram, M, Yeung, S, Mongeon, V, Joshi, M, Brunzelle, J.S, Michaels, S.D, Blais, A, Vedadi, M, Couture, J.-F.
登録日2017-03-24
公開日2017-04-19
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Molecular basis for the methylation specificity of ATXR5 for histone H3.
Nucleic Acids Res., 45, 2017
4IES
DownloadVisualize
BU of 4ies by Molmil
Cys-persulfenate bound Cysteine Dioxygenase at pH 6.2 in the presence of Cys
分子名称: Cysteine dioxygenase type 1, FE (III) ION, S-HYDROPEROXYCYSTEINE
著者Driggers, C.M, Cooley, R.B, Sankaran, B, Karplus, P.A.
登録日2012-12-13
公開日2013-06-26
最終更新日2013-09-11
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Cysteine Dioxygenase Structures from pH4 to 9: Consistent Cys-Persulfenate Formation at Intermediate pH and a Cys-Bound Enzyme at Higher pH.
J.Mol.Biol., 425, 2013
1JVL
DownloadVisualize
BU of 1jvl by Molmil
Azurin dimer, covalently crosslinked through bis-maleimidomethylether
分子名称: 1-[PYRROL-1-YL-2,5-DIONE-METHOXYMETHYL]-PYRROLE-2,5-DIONE, Azurin, COPPER (II) ION, ...
著者van Amsterdam, I.M.C, Ubbink, M, Einsle, O, Messerschmidt, A, Merli, A, Cavazzini, D, Rossi, G.L, Canters, G.W.
登録日2001-08-30
公開日2002-01-04
最終更新日2021-10-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Dramatic modulation of electron transfer in protein complexes by crosslinking
Nat.Struct.Biol., 9, 2002
3WLO
DownloadVisualize
BU of 3wlo by Molmil
Crystal Structure Analysis of Plant Exohydrolase
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-D-glucan exohydrolase isoenzyme ExoI, SULFATE ION, ...
著者Streltsov, V.A, Luang, S, Hrmova, M.
登録日2013-11-12
公開日2015-03-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Discovery of processive catalysis by an exo-hydrolase with a pocket-shaped active site.
Nat Commun, 10, 2019
4IF6
DownloadVisualize
BU of 4if6 by Molmil
Structure of NAD-dependent protein deacetylase sirtuin-1 (closed state, 2.25 A)
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, NAD-dependent protein deacetylase sirtuin-1, ZINC ION
著者Davenport, A.M, Huber, F.M, Hoelz, A.
登録日2012-12-14
公開日2013-10-23
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structure of a nucleoporin complex
To be Published
2VKJ
DownloadVisualize
BU of 2vkj by Molmil
Structure of the soluble domain of the membrane protein TM1634 from Thermotoga maritima
分子名称: SULFATE ION, TM1634
著者McCleverty, C.J, Columbus, L, Kreusch, A, Lesley, S.A, Joint Center for Structural Genomics (JCSG)
登録日2007-12-19
公開日2008-04-08
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structure and Ligand Binding of the Soluble Domain of a Thermotoga Maritima Membrane Protein of Unknown Function Tm1634.
Protein Sci., 17, 2008
6PMP
DownloadVisualize
BU of 6pmp by Molmil
Crystal structure of a fragment of rat phospholipase Cepsilon EF3-RA1
分子名称: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1, CALCIUM ION
著者Rugema, N.Y, Lyon, A.M.
登録日2019-07-02
公開日2020-07-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.73 Å)
主引用文献Structure of phospholipase C epsilon reveals an integrated RA1 domain and previously unidentified regulatory elements.
Commun Biol, 3, 2020

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon