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PDB: 88608 件

4IMC
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Crystal Structure of Pasteurella multocida N-Acetyl-D-Neuraminic acid lyase
分子名称: 1,2-ETHANEDIOL, N-acetylneuraminate lyase, PHOSPHATE ION
著者Fisher, A.J, Huynh, N.
登録日2013-01-02
公開日2013-11-06
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural Basis for Substrate Specificity and Mechanism of N-Acetyl-d-neuraminic Acid Lyase from Pasteurella multocida.
Biochemistry, 52, 2013
5JSI
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BU of 5jsi by Molmil
Structure of membrane protein
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Bacteriorhodopsin, EICOSANE, ...
著者Melnikov, I, Polovinkin, V, Kovalev, K, Shevchenko, V, Gushchin, I, Popov, A, Gordeliy, V.
登録日2016-05-08
公開日2017-05-31
最終更新日2023-03-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Fast iodide-SAD phasing for high-throughput membrane protein structure determination.
Sci Adv, 3, 2017
4ICT
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Substrate and reaction specificity of Mycobacterium tuberculosis cytochrome P450 CYP121
分子名称: (3S,6S)-3-benzyl-6-(4-hydroxybenzyl)piperazine-2,5-dione, Cytochrome P450 121, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Fonvielle, M, Le Du, M.-H, Lequin, O, Lecoq, A, Jacquet, M, Thai, R, Dubois, S, Grach, G, Gondry, M, Belin, P.
登録日2012-12-11
公開日2013-05-01
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Substrate and Reaction Specificity of Mycobacterium tuberculosis Cytochrome P450 CYP121: INSIGHTS FROM BIOCHEMICAL STUDIES AND CRYSTAL STRUCTURES.
J.Biol.Chem., 288, 2013
4IDD
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BU of 4idd by Molmil
Structure of the Fragaria x ananassa enone oxidoreductase in complex with NADPH and EHMF
分子名称: (2R)-2-ethyl-4-hydroxy-5-methylfuran-3(2H)-one, 1,2-ETHANEDIOL, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Schiefner, A, Skerra, A.
登録日2012-12-12
公開日2013-04-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural basis for the enzymatic formation of the key strawberry flavor compound 4-hydroxy-2,5-dimethyl-3(2H)-furanone
J.Biol.Chem., 288, 2013
3ZSC
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BU of 3zsc by Molmil
Catalytic function and substrate recognition of the pectate lyase from Thermotoga maritima
分子名称: 4-deoxy-beta-L-threo-hex-4-enopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid, GLYCEROL, PECTATE TRISACCHARIDE-LYASE, ...
著者McDonough, M.A, Thymark, M, Frisner, H, Hotchkiss, A, Sonksen, C, Bjornvad, M, Johansen, K.S, Larsen, S.
登録日2011-06-24
公開日2012-07-11
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Catalytic Function and Substrate Recognition of the Pectate Lyase from Thermotoga Maritima
To be Published
6CNK
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BU of 6cnk by Molmil
Structure of the 3alpha2beta stiochiometry of the human Alpha4Beta2 nicotinic receptor
分子名称: (S)-3-(1-METHYLPYRROLIDIN-2-YL)PYRIDINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL HEMISUCCINATE, ...
著者Walsh Jr, R.M, Roh, S.H, Gharpure, A, Morales-Perez, C.L, Hibbs, R.E.
登録日2018-03-08
公開日2018-05-02
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural principles of distinct assemblies of the human alpha 4 beta 2 nicotinic receptor.
Nature, 557, 2018
3ZFZ
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BU of 3zfz by Molmil
Crystal structure of ceftaroline acyl-PBP2a from MRSA with non- covalently bound ceftaroline and muramic acid at allosteric site obtained by soaking
分子名称: CADMIUM ION, CHLORIDE ION, Ceftaroline, ...
著者Otero, L.H, Rojas-Altuve, A, Hermoso, J.A.
登録日2012-12-13
公開日2013-10-09
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献How Allosteric Control of Staphylococcus Aureus Penicillin Binding Protein 2A Enables Methicillin Resistance and Physiological Function
Proc.Natl.Acad.Sci.USA, 110, 2013
6VZU
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TTLL6 bound to alpha-elongation analog
分子名称: (2~{S})-2-[[[(1~{R})-1-acetamido-4-oxidanyl-4-oxidanylidene-butyl]-oxidanyl-phosphoryl]methyl]pentanedioic acid, (2~{S})-2-[[[(1~{R})-1-acetamido-4-oxidanyl-4-oxidanylidene-butyl]-phosphonooxy-phosphoryl]methyl]pentanedioic acid, ADENOSINE-5'-DIPHOSPHATE, ...
著者Mahalingan, K.K, Keenen, E.K, Strickland, M, Li, Y, Liu, Y, Ball, H.B, Tanner, M.E, Tjandra, N, Roll-Mecak, A.
登録日2020-02-28
公開日2020-08-12
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Structural basis for polyglutamate chain initiation and elongation by TTLL family enzymes.
Nat.Struct.Mol.Biol., 27, 2020
5DF5
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BU of 5df5 by Molmil
The structure of oxidized rat cytochrome c (T28E) at 1.30 angstroms resolution.
分子名称: Cytochrome c, somatic, HEME C, ...
著者Edwards, B.F.P, Mahapatra, G, Vaishnav, A.A, Brunzelle, J.S, Huttemann, M.
登録日2015-08-26
公開日2016-09-14
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.301 Å)
主引用文献The structure of oxidized rat cytochrome c (T28E) at 1.30 angstroms resolution.
To Be Published
1JH6
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Semi-reduced Cyclic Nucleotide Phosphodiesterase from Arabidopsis thaliana
分子名称: SULFATE ION, cyclic phosphodiesterase
著者Hofmann, A, Grella, M, Botos, I, Filipowicz, W, Wlodawer, A.
登録日2001-06-27
公開日2002-02-06
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of the semireduced and inhibitor-bound forms of cyclic nucleotide phosphodiesterase from Arabidopsis thaliana.
J.Biol.Chem., 277, 2002
2VZT
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BU of 2vzt by Molmil
Complex of Amycolatopsis orientalis exo-chitosanase CsxA E541A with PNP-beta-D-glucosamine
分子名称: 4-nitrophenyl 2-amino-2-deoxy-beta-D-glucopyranoside, ACETATE ION, CADMIUM ION, ...
著者Lammerts van Bueren, A, Ghinet, M.G, Gregg, K, Fleury, A, Brzezinski, R, Boraston, A.B.
登録日2008-08-05
公開日2008-10-14
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The Structural Basis of Substrate Recognition in an Exo-Beta-D-Glucosaminidase Involved in Chitosan Hydrolysis.
J.Mol.Biol., 385, 2009
6PIU
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BU of 6piu by Molmil
Crystal structure of HCV NS3/4A D168A protease in complex with P4-P5-6 (NR03-68)
分子名称: 1,2-ETHANEDIOL, NS3 protease, ZINC ION, ...
著者Zephyr, J, Schiffer, C.A.
登録日2019-06-27
公開日2020-03-04
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Avoiding Drug Resistance by Substrate Envelope-Guided Design: Toward Potent and Robust HCV NS3/4A Protease Inhibitors.
Mbio, 11, 2020
7B7I
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BU of 7b7i by Molmil
BAZ2A bromodomain in complex with triazole compound MS04-TN02
分子名称: 2-[4-[[(~{E})-~{N},~{N}'-dimethylcarbamimidoyl]amino]piperidin-1-yl]-~{N}-[[2-(3-methyl-1,2,3-triazol-4-yl)-1~{H}-benzimidazol-5-yl]methyl]ethanamide, Bromodomain adjacent to zinc finger domain protein 2A
著者Dalle Vedove, A, Cazzanelli, G, Sedykh, M, Caflisch, A, Lolli, G.
登録日2020-12-10
公開日2021-10-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Identification of a BAZ2A-Bromodomain Hit Compound by Fragment Growing.
Acs Med.Chem.Lett., 13, 2022
5DGO
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BU of 5dgo by Molmil
Crystal structure of cell division cycle protein 45 (Cdc45)
分子名称: 1,2-ETHANEDIOL, Cell division control protein 45 homolog, SULFATE ION
著者Simon, A.C, Pellegrini, L.
登録日2015-08-28
公開日2016-05-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of human Cdc45 and implications for CMG helicase function.
Nat Commun, 7, 2016
7B7B
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BU of 7b7b by Molmil
BAZ2A bromodomain in complex with triazole compound MS04
分子名称: 5-ethyl-2-(3-methyl-1,2,3-triazol-4-yl)-1~{H}-benzimidazole, Bromodomain adjacent to zinc finger domain protein 2A
著者Dalle Vedove, A, Cazzanelli, G, Sedykh, M, Caflisch, A, Lolli, G.
登録日2020-12-10
公開日2021-10-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Identification of a BAZ2A-Bromodomain Hit Compound by Fragment Growing.
Acs Med.Chem.Lett., 13, 2022
8RST
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BU of 8rst by Molmil
Rap from bacteriophage Phi3T in presence of pheromone SRGHTS
分子名称: Glycerol ethoxylate, Rap3T, SRGHTS, ...
著者Felipe-Ruiz, A, Zamora-Caballero, S, Marina, A.
登録日2024-01-25
公開日2024-07-24
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献Extracellular proteolysis of tandemly duplicated pheromone propeptides affords additional complexity to bacterial quorum sensing
Plos Biol., 2024
8RSV
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Rap from bacteriophage Phi3T in presence of pheromone RRGHTAS
分子名称: Glycerol ethoxylate, Pheromone RRGHTAS, Rap3T
著者Felipe-Ruiz, A, Zamora-Caballero, S, Marina, A.
登録日2024-01-25
公開日2024-07-24
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献Extracellular proteolysis of tandemly duplicated pheromone propeptides affords additional complexity to bacterial quorum sensing
Plos Biol., 2024
1JKX
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BU of 1jkx by Molmil
Unexpected formation of an epoxide-derived multisubstrate adduct inhibitor on the active site of GAR transformylase
分子名称: N-[5'-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY-QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE, PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE
著者Greasley, S.E, Marsilje, T.H, Cai, H, Baker, S, Benkovic, S.J, Boger, D.L, Wilson, I.A.
登録日2001-07-13
公開日2001-11-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Unexpected formation of an epoxide-derived multisubstrate adduct inhibitor on the active site of GAR transformylase.
Biochemistry, 40, 2001
4UX9
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Crystal structure of JNK1 bound to a MKK7 docking motif
分子名称: DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 7, MITOGEN-ACTIVATED PROTEIN KINASE 8, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
著者Kragelj, J, Palencia, A, Nanao, M.H, Maurin, D, Bouvignies, G, Blackledge, M, Ringkjobing-Jensen, M.
登録日2014-08-20
公開日2015-03-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献Structure and Dynamics of the Mkk7-Jnk Signaling Complex.
Proc.Natl.Acad.Sci.USA, 112, 2015
1JUH
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Crystal Structure of Quercetin 2,3-dioxygenase
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Fusetti, F, Schroeter, K.H, Steiner, R.A, Dijkstra, B.W.
登録日2001-08-24
公開日2002-05-22
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of the copper-containing quercetin 2,3-dioxygenase from Aspergillus japonicus.
Structure, 10, 2002
4IC8
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BU of 4ic8 by Molmil
Crystal structure of the apo ERK5 kinase domain
分子名称: Mitogen-activated protein kinase 7
著者Gogl, G, Remenyi, A.
登録日2012-12-10
公開日2013-02-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural mechanism for the specific assembly and activation of the extracellular signal regulated kinase 5 (ERK5) module.
J.Biol.Chem., 288, 2013
3ZI8
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BU of 3zi8 by Molmil
Structure of the R17A mutant of the Ralstonia soleanacerum lectin at 1.5 Angstrom in complex with L-fucose
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, MAGNESIUM ION, PUTATIVE FUCOSE-BINDING LECTIN PROTEIN, ...
著者Arnaud, J, Audfray, A, Claudinon, J, Trondle, K, Trosvalet, M, Thomas, A, Varrot, A, Romer, W, Imberty, A.
登録日2013-01-07
公開日2013-07-31
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Reduction of Lectin Valency Drastically Changes Glycolipid Dynamics in Membranes, But not Surface Avidity.
Acs Chem.Biol., 8, 2013
6PD3
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Crystal Structure of a H5N1 influenza virus hemagglutinin at pH 5.5
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Hemagglutinin, ...
著者Antanasijevic, A, Durst, M.A, Lavie, A, Caffrey, M.
登録日2019-06-18
公開日2019-11-13
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Identification of a pH sensor in Influenza hemagglutinin using X-ray crystallography.
J.Struct.Biol., 209, 2020
7ARZ
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Ternary complex of NAD-dependent formate dehydrogenase from Physcomitrium patens
分子名称: AZIDE ION, Formate dehydrogenase, mitochondrial, ...
著者Goryaynova, D.A, Nikolaeva, A.Y, Pometun, A.A, Savin, S.S, Parshin, P.D, Popov, V.O, Tishkov, V.I, Boyko, K.M.
登録日2020-10-26
公開日2021-11-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Ternary complex of NAD-dependent formate dehydrogenase from Physcomitrium patens
To Be Published
4IDB
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BU of 4idb by Molmil
Structure of the Fragaria x ananassa enone oxidoreductase in complex with NADP+
分子名称: 1,2-ETHANEDIOL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Ripening-induced protein, ...
著者Schiefner, A, Skerra, A.
登録日2012-12-12
公開日2013-04-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structural basis for the enzymatic formation of the key strawberry flavor compound 4-hydroxy-2,5-dimethyl-3(2H)-furanone
J.Biol.Chem., 288, 2013

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