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PDB: 89346 件

5MUM
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Glycoside Hydrolase BACINT_00347
分子名称: 1,2-ETHANEDIOL, BACINT_00347, PENTAETHYLENE GLYCOL
著者Munoz-Munoz, J, Cartmell, A, Terrapon, N, Henrissat, B, Gilbert, H.J.
登録日2017-01-13
公開日2017-04-26
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Unusual active site location and catalytic apparatus in a glycoside hydrolase family.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7ODA
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OXA-48-like Beta-lactamase OXA-436
分子名称: 1,2-ETHANEDIOL, Beta-lactamase, CHLORIDE ION
著者Lund, B.A, Thomassen, A.M, Carlsen, T.J.W, Leiros, H.K.S.
登録日2021-04-29
公開日2021-09-08
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.796 Å)
主引用文献Biochemical and biophysical characterization of the OXA-48-like carbapenemase OXA-436.
Acta Crystallogr.,Sect.F, 77, 2021
5MVC
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Crystal structure of potent human Dihydroorotate Dehydrogenase inhibitors based on hydroxylated azole scaffolds
分子名称: 4-oxidanyl-~{N}-[2,3,5,6-tetrakis(fluoranyl)-4-phenyl-phenyl]-1,2,5-thiadiazole-3-carboxamide, ACETATE ION, CHLORIDE ION, ...
著者Goyal, P, Andersson, M, Moritzer, A.C, Sainas, S, Pippione, A.C, Boschi, D, Al-Kadaraghi, S, Lolli, M, Friemann, R.
登録日2017-01-16
公開日2017-03-08
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Design, synthesis, biological evaluation and X-ray structural studies of potent human dihydroorotate dehydrogenase inhibitors based on hydroxylated azole scaffolds.
Eur J Med Chem, 129, 2017
5MA3
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GFP-binding DARPin fusion gc_R11
分子名称: 1,2-ETHANEDIOL, Green fluorescent protein, R11
著者Hansen, S, Stueber, J, Ernst, P, Bojar, D, Batyuk, A, Plueckthun, A.
登録日2016-11-03
公開日2017-11-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity.
Sci Rep, 7, 2017
7ZQD
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Dimeric PSI of Chlamydomonas reinhardtii at 2.97 A resolution
分子名称: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
著者Naschberger, A, Amunts, A.
登録日2022-04-29
公開日2022-11-23
実験手法ELECTRON MICROSCOPY (2.97 Å)
主引用文献Algal photosystem I dimer and high-resolution model of PSI-plastocyanin complex.
Nat.Plants, 8, 2022
6ND5
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Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Svetlov, M.S, Plessa, E, Chen, C.-W, Bougas, A, Krokidis, M.G, Dinos, G.P, Polikanov, Y.S.
登録日2018-12-13
公開日2019-03-20
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献High-resolution crystal structures of ribosome-bound chloramphenicol and erythromycin provide the ultimate basis for their competition.
RNA, 25, 2019
6Z2D
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Crystal structure of wild type OgpA from Akkermansia muciniphila in P 41 21 2
分子名称: 1,2-ETHANEDIOL, FORMIC ACID, O-glycan protease, ...
著者Trastoy, B, Naegali, A, Anso, I, Sjogren, J, Guerin, M.E.
登録日2020-05-15
公開日2020-09-30
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.899 Å)
主引用文献Structural basis of mammalian mucin processing by the human gut O-glycopeptidase OgpA from Akkermansia muciniphila.
Nat Commun, 11, 2020
5MCQ
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CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH ACTIVE SITE AND EXOSITE BINDING PEPTIDE INHIBITOR
分子名称: 1,2-ETHANEDIOL, BACE-1 ACTIVE AND EXOSITE BINDING INHIBITOR, Beta-secretase 1
著者Kuglstatter, A, Stihle, M, Benz, J.
登録日2016-11-10
公開日2017-09-27
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Potent and Selective BACE-1 Peptide Inhibitors Lower Brain A beta Levels Mediated by Brain Shuttle Transport.
EBioMedicine, 24, 2017
5M6H
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Small Molecule inhibitors of IAP
分子名称: 1-[3,3-dimethyl-6-(phenylmethyl)-2~{H}-pyrrolo[3,2-b]pyridin-1-yl]-2-[(2~{R},5~{R})-5-methyl-2-morpholin-4-ylcarbonyl-piperazin-4-ium-1-yl]ethanone, E3 ubiquitin-protein ligase XIAP, SODIUM ION, ...
著者Williams, P.A.
登録日2016-10-25
公開日2017-05-24
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Discovery of a Potent Nonpeptidomimetic, Small-Molecule Antagonist of Cellular Inhibitor of Apoptosis Protein 1 (cIAP1) and X-Linked Inhibitor of Apoptosis Protein (XIAP).
J. Med. Chem., 60, 2017
6Z31
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Human cation-independent mannose 6-phosphate/ IGF2 receptor domain 8
分子名称: CHLORIDE ION, Cation-independent mannose-6-phosphate receptor, SODIUM ION
著者Bochel, A.J, Williams, C, Crump, M.P.
登録日2020-05-19
公開日2020-08-19
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献Structure of the Human Cation-Independent Mannose 6-Phosphate/IGF2 Receptor Domains 7-11 Uncovers the Mannose 6-Phosphate Binding Site of Domain 9.
Structure, 28, 2020
6ZLD
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Crystal Structure of UDP-Glucuronic acid 4-epimerase from Bacillus cereus in complex with UDP-Glucuronic acid and NAD
分子名称: Epimerase domain-containing protein, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID
著者Iacovino, L.G, Savino, S, Mattevi, A.
登録日2020-06-30
公開日2020-07-29
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystallographic snapshots of UDP-glucuronic acid 4-epimerase ligand binding, rotation, and reduction.
J.Biol.Chem., 295, 2020
6ZLL
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Crystal Structure of UDP-Glucuronic acid 4-epimerase from Bacillus cereus in complex with UDP-Galacturonic acid and NAD
分子名称: (2S,3R,4S,5R,6R)-6-[[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-3,4,5-trihydroxy-oxane-2-carboxylic acid, Epimerase domain-containing protein, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Iacovino, L.G, Savino, S, Mattevi, A.
登録日2020-06-30
公開日2020-07-29
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystallographic snapshots of UDP-glucuronic acid 4-epimerase ligand binding, rotation, and reduction.
J.Biol.Chem., 295, 2020
8VEI
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De novo designed colic acid binder CHD_r1
分子名称: CHD_r1
著者Bera, A.K, An, L, Baker, D.
登録日2023-12-19
公開日2024-07-17
最終更新日2024-07-31
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Binding and sensing diverse small molecules using shape-complementary pseudocycles.
Science, 385, 2024
8C0S
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Crystal structure of S. aureus BlaR1 sensor domain in complex with an imidazole inhibitor
分子名称: 3-[[2,4-bis(trifluoromethyl)phenyl]methyl]-5-(hydroxymethyl)-1~{H}-imidazole-2-thione, Regulatory protein BlaR1
著者Miguel-Ruano, V, Hermoso, J.A.
登録日2022-12-19
公開日2024-07-10
最終更新日2024-09-04
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Restoring susceptibility to beta-lactam antibiotics in methicillin-resistant Staphylococcus aureus.
Nat.Chem.Biol., 2024
6Z6Y
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Galectin-8 N-terminal domain in complex with a sulfatide mimicking a sphingolipid
分子名称: ACETATE ION, Galectin-8, TRIETHYLENE GLYCOL, ...
著者Romero, A, Medrano, F.J.
登録日2020-05-29
公開日2020-12-30
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Probing sulfatide-tissue lectin recognition with functionalized glycodendrimersomes.
Iscience, 24, 2021
8V4L
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CCP5 in complex with microtubules class2
分子名称: Cytosolic carboxypeptidase-like protein 5, GLUTAMIC ACID, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Chen, J, Zehr, E.A, Gruschus, J.M, Szyk, A, Liu, Y, Tanner, M.E, Tjandra, N, Roll-Mecak, A.
登録日2023-11-29
公開日2024-07-17
最終更新日2024-08-07
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Tubulin code eraser CCP5 binds branch glutamates by substrate deformation.
Nature, 631, 2024
8C0P
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Crystal structure of S. aureus BlaR1 sensor domain in complex with a boronate inhibitor
分子名称: Regulatory protein BlaR1, [1-[[2,4-bis(trifluoromethyl)phenyl]methyl]benzimidazol-2-yl]sulfanylmethyl-$l^{3}-oxidanyl-bis(oxidanyl)boron
著者Miguel-Ruano, V, Jimenez-Faraco, E, Hermoso, J.A.
登録日2022-12-19
公開日2024-07-10
最終更新日2024-09-04
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Restoring susceptibility to beta-lactam antibiotics in methicillin-resistant Staphylococcus aureus.
Nat.Chem.Biol., 2024
8VCJ
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CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 7:2:1 stoichiometry from E. coli Tn7 bound to ATPgS and ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA, MAGNESIUM ION, ...
著者Shen, Y, Guarne, A.
登録日2023-12-14
公開日2024-07-31
実験手法ELECTRON MICROSCOPY (3.32 Å)
主引用文献Assembly of the Tn7 targeting complex by a regulated stepwise process.
Mol.Cell, 84, 2024
7BIE
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Crystal structure of nvWrap-T, a 7-bladed symmetric propeller
分子名称: CITRIC ACID, nvWRAP-T
著者Lee, X.Y, Mylemans, B, Laier, I, Voet, A.R.D.
登録日2021-01-12
公開日2021-09-22
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure and stability of the designer protein WRAP-T and its permutants.
Sci Rep, 11, 2021
7BIF
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Crystal structure of v22WRAP-T, a 7-bladed designer protein
分子名称: v22WRAP-T
著者Lee, X.Y, Mylemans, B, Laier, I, Voet, A.R.D.
登録日2021-01-12
公開日2021-09-22
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structure and stability of the designer protein WRAP-T and its permutants.
Sci Rep, 11, 2021
8VCT
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CyoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 6:2:1 stoichiometry from E. coli Tn7 bound to ATPgS and ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (50-MER), MAGNESIUM ION, ...
著者Shen, Y, Guarne, A.
登録日2023-12-14
公開日2024-07-31
実験手法ELECTRON MICROSCOPY (3.83 Å)
主引用文献Assembly of the Tn7 targeting complex by a regulated stepwise process.
Mol.Cell, 84, 2024
6WXQ
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Crystal structure of CRISPR-associated transcription factor Csa3 complexed with cA4
分子名称: CRISPR-associated transcription factor Csa3 (Type I-A), GLYCEROL, cyclic tetraadenylate
著者Xia, P, Dutta, A, Parashar, V.
登録日2020-05-11
公開日2021-11-17
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural basis of cyclic oligoadenylate binding to the transcription factor Csa3 outlines cross talk between type III and type I CRISPR systems.
J.Biol.Chem., 298, 2022
6VVF
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Scabin (Y129H) toxin from Streptomyces scabies
分子名称: Scabin
著者Heney, K, Lyons, B, Merrill, A.R.
登録日2020-02-17
公開日2021-01-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Mapping the DNA-Binding Motif of Scabin Toxin, a Guanine Modifying Enzyme from Streptomyces scabies .
Toxins, 13, 2021
8V3M
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CCP5 apo structure
分子名称: Cytosolic carboxypeptidase-like protein 5, D-MALATE, IMIDAZOLE, ...
著者Chen, J, Zehr, E.A, Gruschus, J.M, Szyk, A, Liu, Y, Tanner, M.E, Tjandra, N, Roll-Mecak, A.
登録日2023-11-28
公開日2024-07-17
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Tubulin code eraser CCP5 binds branch glutamates by substrate deformation.
Nature, 631, 2024
7MQA
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Cryo-EM structure of the human SSU processome, state post-A1
分子名称: 18S rRNA, 40S ribosomal protein S11, 40S ribosomal protein S12, ...
著者Vanden Broeck, A, Singh, S, Klinge, S.
登録日2021-05-05
公開日2021-09-22
最終更新日2021-09-29
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Nucleolar maturation of the human small subunit processome.
Science, 373, 2021

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件を2024-10-09に公開中

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