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PDB: 89111 results

8D7O
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Human Casein kinase 1 delta in complex with phosphorylated human PERIOD2 FASP peptide
Descriptor: Casein kinase I isoform delta, Period circadian protein homolog 2 peptide
Authors:Philpott, J.M, Freeberg, A.M, Tripathi, S.M, Partch, C.L.
Deposit date:2022-06-07
Release date:2023-05-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:PERIOD phosphorylation leads to feedback inhibition of CK1 activity to control circadian period.
Mol.Cell, 83, 2023
8D7P
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BU of 8d7p by Molmil
Human Casein kinase 1 delta in complex with phosphorylated Drosophila PERIOD peptide
Descriptor: Casein kinase I isoform delta, Period circadian protein peptide
Authors:Philpott, J.M, Freeberg, A.M, Tripathi, S.M, Partch, C.L.
Deposit date:2022-06-07
Release date:2023-05-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:PERIOD phosphorylation leads to feedback inhibition of CK1 activity to control circadian period.
Mol.Cell, 83, 2023
4XFM
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Crystal structure of a domain of unknown function (DUF1537) from Pectobacterium atrosepticum (ECA3761), Target EFI-511609, with bound D-threonate, domain swapped dimer
Descriptor: THREONATE ION, Uncharacterized protein
Authors:Vetting, M.W, Al Obaidi, N.F, Toro, R, Morisco, L.L, Benach, J, Wasserman, S.R, Attonito, J.D, Scott Glenn, A, Chamala, S, Chowdhury, S, Lafleur, J, Love, J, Seidel, R.D, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-12-27
Release date:2015-04-01
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Assignment of function to a domain of unknown function: DUF1537 is a new kinase family in catabolic pathways for acid sugars.
Proc.Natl.Acad.Sci.USA, 113, 2016
4XI1
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BU of 4xi1 by Molmil
Crystal structure of U-box 2 of LubX / LegU2 / Lpp2887 from Legionella pneumophila str. Paris, wild-type
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase LubX, GLYCEROL, ...
Authors:Stogios, P.J, Quaile, T, Skarina, T, Cuff, M, Di Leo, R, Yim, V, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2015-01-06
Release date:2015-01-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.983 Å)
Cite:Molecular Characterization of LubX: Functional Divergence of the U-Box Fold by Legionella pneumophila.
Structure, 23, 2015
8DHL
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Tannerella forsythia beta-glucuronidase (L2)
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Glycosyl hydrolase family 2, ...
Authors:Lietzan, A.D, Redinbo, M.R.
Deposit date:2022-06-27
Release date:2023-05-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Microbial beta-glucuronidases drive human periodontal disease etiology.
Sci Adv, 9, 2023
8DHV
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BU of 8dhv by Molmil
Treponema lecithinolyticum beta-glucuronidase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Glycosyl hydrolase family 2, ...
Authors:Lietzan, A.D, Redinbo, M.R.
Deposit date:2022-06-28
Release date:2023-05-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Microbial beta-glucuronidases drive human periodontal disease etiology.
Sci Adv, 9, 2023
7LRB
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BU of 7lrb by Molmil
Ni-bound crystal structure of the engineered cyt cb562 variant, DiCyt2, crystallized in the presence of Ni(II) (M1) and Cu(II) (M2)
Descriptor: COBALT (II) ION, HEME C, Soluble cytochrome b562
Authors:Choi, T.S, Tezcan, F.A.
Deposit date:2021-02-16
Release date:2022-02-23
Last modified:2024-04-17
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Overcoming universal restrictions on metal selectivity by protein design.
Nature, 603, 2022
4QQY
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Crystal structure of T. fusca Cas3-ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CRISPR-associated helicase, Cas3 family, ...
Authors:Ke, A, Huo, Y, Nam, K.H.
Deposit date:2014-06-30
Release date:2014-08-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:Structures of CRISPR Cas3 offer mechanistic insights into Cascade-activated DNA unwinding and degradation.
Nat.Struct.Mol.Biol., 21, 2014
6DWY
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BU of 6dwy by Molmil
Hermes transposase deletion dimer complex with (C/G) DNA and Ca2+
Descriptor: CALCIUM ION, DNA (26-MER), DNA (5'-D(*AP*GP*AP*GP*AP*AP*CP*AP*AP*CP*AP*AP*CP*AP*AP*G)-3'), ...
Authors:Dyda, F, Hickman, A.B.
Deposit date:2018-06-28
Release date:2018-09-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural insights into the mechanism of double strand break formation by Hermes, a hAT family eukaryotic DNA transposase.
Nucleic Acids Res., 46, 2018
8T67
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BU of 8t67 by Molmil
Influenza PA-N Endonuclease I38T Mutant (amino acids 52-74 truncation)
Descriptor: MANGANESE (II) ION, Polymerase acidic protein
Authors:Kohlbrand, A.J, Cohen, S.M.
Deposit date:2023-06-15
Release date:2024-05-08
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structural Studies of Inhibitors with Clinically Relevant Influenza Endonuclease Variants.
Biochemistry, 63, 2024
6UIH
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Crystal structure of the core domain from the GST-like protein GDAP1
Descriptor: Ganglioside-induced differentiation-associated protein 1
Authors:Googins, M.R, VanDemark, A.P.
Deposit date:2019-09-30
Release date:2020-04-29
Last modified:2020-05-13
Method:X-RAY DIFFRACTION (2.826 Å)
Cite:Structural and functional divergence of GDAP1 from the glutathione S-transferase superfamily.
Faseb J., 34, 2020
7TNK
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BU of 7tnk by Molmil
Complex GNNN of AMPA-subtype iGluR GluA2 in complex with auxiliary subunit gamma2 (Stargazin) at low glutamate concentration (20 uM) in the presence of cyclothiazide (100 uM)
Descriptor: CYCLOTHIAZIDE, GLUTAMIC ACID, Isoform Flip of Glutamate receptor 2,Voltage-dependent calcium channel gamma-3 subunit chimera
Authors:Yelshanskaya, M.V, Sobolevsky, A.I.
Deposit date:2022-01-21
Release date:2022-04-20
Last modified:2022-05-18
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Opening of glutamate receptor channel to subconductance levels.
Nature, 605, 2022
5G10
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BU of 5g10 by Molmil
Pseudomonas aeruginosa HDAH bound to 9,9,9 trifluoro-8,8-dihydroy-N-phenylnonanamide
Descriptor: 9,9,9-tris(fluoranyl)-8,8-bis(oxidanyl)-~{N}-phenyl-nonanamide, HDAH, POTASSIUM ION, ...
Authors:Kraemer, A, Meyer-Almes, F.J, Yildiz, O.
Deposit date:2016-03-23
Release date:2016-11-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Crystal Structure of a Histone Deacetylase Homologue from Pseudomonas aeruginosa.
Biochemistry, 55, 2016
5ZW7
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BU of 5zw7 by Molmil
FAD-PigA complex at 1.3 A
Descriptor: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Lee, C.-C, Ko, T.-P, Wang, A.H.J.
Deposit date:2018-05-14
Release date:2018-09-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal Structure of PigA: A Prolyl Thioester-Oxidizing Enzyme in Prodigiosin Biosynthesis.
Chembiochem, 20, 2019
7LV1
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BU of 7lv1 by Molmil
Cu-bound crystal structure of the engineered cyt cb562 variant, DiCyt2, crystallized in the presence of Cu(II)
Descriptor: CALCIUM ION, COPPER (II) ION, HEME C, ...
Authors:Choi, T.S, Tezcan, F.A.
Deposit date:2021-02-23
Release date:2022-03-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Overcoming universal restrictions on metal selectivity by protein design.
Nature, 603, 2022
5KB1
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BU of 5kb1 by Molmil
Crystal Structure of a Tris-thiolate Hg(II) Complex in a de Novo Three Stranded Coiled Coil Peptide
Descriptor: CHLORIDE ION, Hg(II)Zn(II)(GRAND Coil Ser-L16CL30H)3+, MERCURY (II) ION, ...
Authors:Ruckcthong, L, Zastrow, M.L, Stuckey, J.A, Pecoraro, V.L.
Deposit date:2016-06-02
Release date:2016-08-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:A Crystallographic Examination of Predisposition versus Preorganization in de Novo Designed Metalloproteins.
J.Am.Chem.Soc., 138, 2016
7TNO
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BU of 7tno by Molmil
Complex GGGN of AMPA-subtype iGluR GluA2 in complex with auxiliary subunit gamma2 (Stargazin) at low glutamate concentration (20 uM) in the presence of cyclothiazide (100 uM)
Descriptor: CYCLOTHIAZIDE, GLUTAMIC ACID, Isoform Flip of Glutamate receptor 2,Voltage-dependent calcium channel gamma-3 subunit chimera
Authors:Yelshanskaya, M.V, Sobolevsky, A.I.
Deposit date:2022-01-21
Release date:2022-04-20
Last modified:2022-05-18
Method:ELECTRON MICROSCOPY (4.02 Å)
Cite:Opening of glutamate receptor channel to subconductance levels.
Nature, 605, 2022
7TNM
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BU of 7tnm by Molmil
Complex GNGN2 of AMPA-subtype iGluR GluA2 in complex with auxiliary subunit gamma2 (Stargazin) at low glutamate concentration (20 uM) in the presence of cyclothiazide (100 uM)
Descriptor: CYCLOTHIAZIDE, GLUTAMIC ACID, Isoform Flip of Glutamate receptor 2,Voltage-dependent calcium channel gamma-3 subunit chimera
Authors:Yelshanskaya, M.V, Sobolevsky, A.I.
Deposit date:2022-01-21
Release date:2022-04-20
Last modified:2022-05-18
Method:ELECTRON MICROSCOPY (4.74 Å)
Cite:Opening of glutamate receptor channel to subconductance levels.
Nature, 605, 2022
8A8J
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BU of 8a8j by Molmil
Complex of RecF and DNA from Thermus thermophilus.
Descriptor: DNA replication and repair protein RecF, MAGNESIUM ION, Oligo1, ...
Authors:Nirwal, S, Czarnocki-Cieciura, M, Chaudhary, A, Zajko, W, Skowronek, K, Chamera, S, Figiel, M, Nowotny, M.
Deposit date:2022-06-23
Release date:2023-04-26
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Mechanism of RecF-RecO-RecR cooperation in bacterial homologous recombination.
Nat.Struct.Mol.Biol., 30, 2023
6AF6
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BU of 6af6 by Molmil
PigA with FAD and proline
Descriptor: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Lee, C.-C, Ko, T.-P, Wang, A.H.J.
Deposit date:2018-08-08
Release date:2018-09-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Crystal Structure of PigA: A Prolyl Thioester-Oxidizing Enzyme in Prodigiosin Biosynthesis.
Chembiochem, 20, 2019
6HQ0
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BU of 6hq0 by Molmil
Crystal structure of ENL (MLLT1), apo form
Descriptor: 1,2-ETHANEDIOL, Protein ENL
Authors:Heidenreich, D, Chaikuad, A, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2018-09-22
Release date:2018-11-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structure-Based Approach toward Identification of Inhibitory Fragments for Eleven-Nineteen-Leukemia Protein (ENL).
J.Med.Chem., 61, 2018
6TZA
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BU of 6tza by Molmil
CryoEM reconstruction of ESCRT-III filament composed of IST1 NTD R16E K27E double mutant
Descriptor: IST1 homolog
Authors:Nguyen, H.C, Frost, A.
Deposit date:2019-08-11
Release date:2020-04-08
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:Membrane constriction and thinning by sequential ESCRT-III polymerization.
Nat.Struct.Mol.Biol., 27, 2020
4XN4
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BU of 4xn4 by Molmil
Crystal Structure of Met260Ala mutant of E. coli Aminopeptidase N in complex with L-Methionine
Descriptor: Aminopeptidase N, GLYCEROL, MALONATE ION, ...
Authors:Addlagatta, A, Gumpena, R.
Deposit date:2015-01-15
Release date:2016-03-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Crystal Structure of Met260Ala mutant of E. coli Aminopeptidase N in complex with L-Methionine
To Be Published
4XLQ
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BU of 4xlq by Molmil
Crystal structure of T.aquaticus transcription initiation complex containing upstream fork (-11 base-paired) promoter
Descriptor: DNA (26-MER), DNA (30-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Bae, B, Darst, S.A.
Deposit date:2015-01-13
Release date:2015-09-23
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (4.6 Å)
Cite:Structure of a bacterial RNA polymerase holoenzyme open promoter complex.
Elife, 4, 2015
5C0B
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BU of 5c0b by Molmil
1E6 TCR in complex with HLA-A02 carrying RQFGPDFPTI
Descriptor: 1,2-ETHANEDIOL, 1E6 TCR Alpha Chain, 1E6 TCR Beta Chain, ...
Authors:Rizkallah, P.J, Bulek, A.M, Cole, D.K, Sewell, A.K.
Deposit date:2015-06-12
Release date:2016-05-04
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Hotspot autoimmune T cell receptor binding underlies pathogen and insulin peptide cross-reactivity.
J.Clin.Invest., 126, 2016

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