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PDB: 88758 results

5JMA
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BU of 5jma by Molmil
Crystal structure of Mycobacterium avium SerB2 in complex with serine at catalytic (PSP) domain
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, Phosphoserine phosphatase, ...
Authors:Shree, S, Dubey, S, Agrawal, A, Ramachandran, R.
Deposit date:2016-04-28
Release date:2017-05-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal structure of Mycobacterium avium SerB2 in complex with serine at catalytic (PSP) domain
To be published
3EPZ
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BU of 3epz by Molmil
Structure of the replication foci-targeting sequence of human DNA cytosine methyltransferase DNMT1
Descriptor: DNA (cytosine-5)-methyltransferase 1, GLYCEROL, SODIUM ION, ...
Authors:Walker, J.R, Avvakumov, G.V, Xue, S, Li, Y, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2008-09-30
Release date:2008-11-25
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:The replication focus targeting sequence (RFTS) domain is a DNA-competitive inhibitor of Dnmt1.
J.Biol.Chem., 286, 2011
6V1I
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BU of 6v1i by Molmil
Cryo-EM reconstruction of the thermophilic bacteriophage P74-26 small terminase- symmetric
Descriptor: Small terminase protein
Authors:Hayes, J.A, Hilbert, B.J, Gaubitz, C, Stone, N.P, Kelch, B.A.
Deposit date:2019-11-20
Release date:2020-02-12
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:A thermophilic phage uses a small terminase protein with a fixed helix-turn-helix geometry.
J.Biol.Chem., 295, 2020
3ESO
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BU of 3eso by Molmil
Human transthyretin (TTR) complexed with N-(3,5-Dibromo-4-hydroxyphenyl)-2,5-dichlorobenzamide
Descriptor: 2,5-dichloro-N-(3,5-dibromo-4-hydroxyphenyl)benzamide, Transthyretin
Authors:Connelly, S, Wilson, I.A.
Deposit date:2008-10-06
Release date:2009-04-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Toward optimization of the second aryl substructure common to transthyretin amyloidogenesis inhibitors using biochemical and structural studies.
J.Med.Chem., 52, 2009
5M3J
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BU of 5m3j by Molmil
Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD
Descriptor: DNA-directed RNA polymerase subunit, Polymerase acidic protein, Polymerase basic protein 2, ...
Authors:Lukarska, M, Pflug, A, Cusack, S.
Deposit date:2016-10-14
Release date:2016-12-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural basis of an essential interaction between influenza polymerase and Pol II CTD.
Nature, 541, 2017
3ESU
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BU of 3esu by Molmil
Crystal structure of anthrax-neutralizing single-chain antibody 14b7
Descriptor: Antibody 14b7* light chain and antibody 14b7* heavy chain linked with a synthetic (GGGGS)4 linker
Authors:Monzingo, A.F, Maynard, J.A, Iverson, B.L, Georgiou, G, Robertus, J.D.
Deposit date:2008-10-06
Release date:2009-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structure of the engineered neutralizing antibody m18 complexed to domain 4 of the anthrax protective antigen.
J.Mol.Biol., 387, 2009
5M4R
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BU of 5m4r by Molmil
Structural tuning of CD81LEL (space group C2)
Descriptor: 1,2-ETHANEDIOL, CD81 antigen, SULFATE ION
Authors:Cunha, E.S, Sfriso, P, Rojas, A.L, Roversi, P, Hospital, A, Orozco, M, Abrescia, N.G.
Deposit date:2016-10-19
Release date:2016-12-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Mechanism of Structural Tuning of the Hepatitis C Virus Human Cellular Receptor CD81 Large Extracellular Loop.
Structure, 25, 2017
5LLW
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BU of 5llw by Molmil
Bacteriophytochrome activated diguanylyl cyclase from Idiomarina species A28L
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, CHLORIDE ION, Diguanylate cyclase (GGDEF) domain-containing protein
Authors:Gourinchas, G, Winkler, A.
Deposit date:2016-07-28
Release date:2017-03-15
Last modified:2017-03-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:Long-range allosteric signaling in red light-regulated diguanylyl cyclases.
Sci Adv, 3, 2017
5EUL
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BU of 5eul by Molmil
Structure of the SecA-SecY complex with a translocating polypeptide substrate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, AYC08, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Li, L, Park, E, Ling, J, Ingram, J, Ploegh, H, Rapoport, T.A.
Deposit date:2015-11-18
Release date:2016-03-09
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Crystal structure of a substrate-engaged SecY protein-translocation channel.
Nature, 531, 2016
6S33
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BU of 6s33 by Molmil
Ligand binding domain of the P. putida receptor PcaY_PP in complex with Protocatechuate
Descriptor: 3,4-DIHYDROXYBENZOIC ACID, ACETATE ION, Aromatic acid chemoreceptor
Authors:Gavira, J.A, Mantilla, M.A, Fernandez, M, Krell, T.
Deposit date:2019-06-24
Release date:2020-10-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:The structural basis for signal promiscuity in a bacterial chemoreceptor.
Febs J., 288, 2021
8BWD
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BU of 8bwd by Molmil
Crystal structure of human Twisted gastrulation protein homolog 1 (TWSG1), crystal form 1
Descriptor: SULFATE ION, Twisted gastrulation protein homolog 1
Authors:Malinauskas, T, Rudolf, A.F, Moore, G, Eggington, H, Belnoue-Davis, H, El Omari, K, Woolley, R.E, Griffiths, S.C, Duman, R, Wagner, A, Leedham, S.J, Baldock, C, Ashe, H, Siebold, C.
Deposit date:2022-12-06
Release date:2024-06-19
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Molecular mechanism of BMP signal control by Twisted gastrulation.
Nat Commun, 15, 2024
8BWA
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BU of 8bwa by Molmil
Crystal structure of human Twisted gastrulation protein homolog 1 (TWSG1) in complex with platinum
Descriptor: PLATINUM (II) ION, Twisted gastrulation protein homolog 1
Authors:Malinauskas, T, Rudolf, A.F, Moore, G, Eggington, H, Belnoue-Davis, H, El Omari, K, Woolley, R.E, Griffiths, S.C, Duman, R, Wagner, A, Leedham, S.J, Baldock, C, Ashe, H, Siebold, C.
Deposit date:2022-12-06
Release date:2024-06-19
Method:X-RAY DIFFRACTION (3.61 Å)
Cite:Molecular mechanism of BMP signal control by Twisted gastrulation.
Nat Commun, 15, 2024
6I72
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BU of 6i72 by Molmil
Structure of Fragaria ananassa O-methyltransferase in complex with S-adenosylhomocysteine and caffeic acid
Descriptor: 1,2-ETHANEDIOL, CAFFEIC ACID, O-methyltransferase, ...
Authors:Heldner, A, Schiefner, A.
Deposit date:2018-11-15
Release date:2019-11-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural insights into enzymatic formation of the strawberry flavor compound 2,5-dimethyl-4-methoxy-3(2H)-furanone
To Be Published
3ESS
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BU of 3ess by Molmil
Catalytic fragment of Cholix toxin from Vibrio Cholerae in complex with the 1,8-Naphthalimide inhibitor
Descriptor: 1H-benzo[de]isoquinoline-1,3(2H)-dione, Cholix toxin
Authors:Merrill, A.R, Jorgensen, R.
Deposit date:2008-10-06
Release date:2009-09-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.191 Å)
Cite:Yeast as a tool for characterizing mono-ADP-ribosyltransferase toxins
Fems Microbiol.Lett., 300, 2009
9EM1
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BU of 9em1 by Molmil
Human pyridoxal phosphatase in complex with 7,8-dihydroxyflavone and phosphate
Descriptor: 7,8-bis(oxidanyl)-2-phenyl-chromen-4-one, Chronophin, GLYCEROL, ...
Authors:Brenner, M, Gohla, A, Schindelin, H.
Deposit date:2024-03-07
Release date:2024-06-12
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:7,8-Dihydroxyflavone is a direct inhibitor of human and murine pyridoxal phosphatase.
Elife, 13, 2024
6S7W
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BU of 6s7w by Molmil
Fumarate hydratase of Mycobacterium tuberculosis in complex with formate and allosteric modulator N-(5-(Azepan-1-ylsulfonyl)-2-methoxyphenyl)-2-(quinolin-4-yl)acetamide
Descriptor: FORMIC ACID, Fumarate hydratase class II, MAGNESIUM ION, ...
Authors:Whitehouse, A.J, Libardo, M.D, Kasbekar, M, Brear, P, Fischer, G, Thomas, C.J, Barry, C.E, Boshoff, H.I, Coyne, A.G, Abell, C.
Deposit date:2019-07-07
Release date:2019-09-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Targeting of Fumarate Hydratase fromMycobacterium tuberculosisUsing Allosteric Inhibitors with a Dimeric-Binding Mode.
J.Med.Chem., 62, 2019
6V4C
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BU of 6v4c by Molmil
Culex quinquefasciatus D7 long form 1- CxD7L1 in complex with ADP
Descriptor: 1,2-ETHANEDIOL, 2-ETHOXYETHANOL, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Calvo, E, Garboczi, D.N, Martin-Martin, I, Gittis, A.G.
Deposit date:2019-11-27
Release date:2020-06-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:ADP binding by the Culex quinquefasciatus mosquito D7 salivary protein enhances blood feeding on mammals.
Nat Commun, 11, 2020
8OM2
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BU of 8om2 by Molmil
Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22.
Descriptor: 15S mitochondrial rRNA, 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial, ...
Authors:Itoh, Y, Chicherin, I, Kamenski, P, Amunts, A.
Deposit date:2023-03-31
Release date:2024-01-10
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (2.57 Å)
Cite:METTL17 is an Fe-S cluster checkpoint for mitochondrial translation.
Mol.Cell, 84, 2024
8OM4
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BU of 8om4 by Molmil
Small subunit of yeast mitochondrial ribosome.
Descriptor: 15S mitochondrial rRNA, 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial, ...
Authors:Itoh, Y, Chicherin, I, Kamenski, P, Amunts, A.
Deposit date:2023-03-31
Release date:2024-01-10
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (2.32 Å)
Cite:METTL17 is an Fe-S cluster checkpoint for mitochondrial translation.
Mol.Cell, 84, 2024
5LRY
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BU of 5lry by Molmil
E coli [NiFe] Hydrogenase Hyd-1 mutant E28D
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Carr, S.B, Phillips, S.E.V, Evans, R.M, Brooke, E.J, Armstrong, F.A.
Deposit date:2016-08-22
Release date:2017-09-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Mechanistic Exploitation of a Self-Repairing, Blocked Proton Transfer Pathway in an O2-Tolerant [NiFe]-Hydrogenase.
J.Am.Chem.Soc., 140, 2018
5OXR
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BU of 5oxr by Molmil
Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R7 oligosaccharide
Descriptor: CALCIUM ION, L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-4,7-anhydro-3-deoxy-D-gluco-oct-2-ulosonic acid, Pulmonary surfactant-associated protein D
Authors:Shrive, A.K, Greenhough, T.J.
Deposit date:2017-09-07
Release date:2018-06-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural definition of hSP-D recognition of Salmonella enterica LPS inner core oligosaccharides reveals alternative binding modes for the same LPS.
PLoS ONE, 13, 2018
6UWT
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BU of 6uwt by Molmil
Clostridium difficile binary toxin translocase CDTb tetradecamer in symmetric conformation
Descriptor: ADP-ribosyltransferase binding component, CALCIUM ION
Authors:Xu, X, Pozharski, E, des Georges, A.
Deposit date:2019-11-05
Release date:2020-01-22
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure of the cell-binding component of theClostridium difficilebinary toxin reveals a di-heptamer macromolecular assembly.
Proc.Natl.Acad.Sci.USA, 117, 2020
5LYZ
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BU of 5lyz by Molmil
Real-space refinement of the structure of hen egg-white lysozyme
Descriptor: HEN EGG WHITE LYSOZYME
Authors:Diamond, R, Phillips, D.C, Blake, C.C.F, North, A.C.T.
Deposit date:1975-02-01
Release date:1977-04-12
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Real-space refinement of the structure of hen egg-white lysozyme.
J.Mol.Biol., 82, 1974
8OM3
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BU of 8om3 by Molmil
Small subunit of yeast mitochondrial ribosome in complex with IF3/Aim23.
Descriptor: 15S mitochondrial rRNA, 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial, ...
Authors:Itoh, Y, Chicherin, I, Kamenski, P, Amunts, A.
Deposit date:2023-03-31
Release date:2024-01-10
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:METTL17 is an Fe-S cluster checkpoint for mitochondrial translation.
Mol.Cell, 84, 2024
3ESN
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BU of 3esn by Molmil
Human transthyretin (TTR) complexed with N-(3,5-Dibromo-4-hydroxyphenyl)-2,6-dimethylbenzamide
Descriptor: N-(3,5-dibromo-4-hydroxyphenyl)-2,6-dimethylbenzamide, Transthyretin
Authors:Connelly, S, Wilson, I.A.
Deposit date:2008-10-06
Release date:2009-04-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Toward optimization of the second aryl substructure common to transthyretin amyloidogenesis inhibitors using biochemical and structural studies.
J.Med.Chem., 52, 2009

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