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PDB: 89035 results

5NAM
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BU of 5nam by Molmil
NMR structure of TLR4 transmembrane domain (624-670) in DMPG/DHPC bicelles
Descriptor: Toll-like receptor 4
Authors:Mineev, K.S, Goncharuk, S.A, Goncharuk, M.V, Arseniev, A.S.
Deposit date:2017-02-28
Release date:2017-09-06
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Spatial structure of TLR4 transmembrane domain in bicelles provides the insight into the receptor activation mechanism.
Sci Rep, 7, 2017
6RWO
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BU of 6rwo by Molmil
SIVrcm intasome (Q148H/G140S) in complex with bictegravir
Descriptor: Bictegravir, CHLORIDE ION, DNA (5'-D(*AP*AP*CP*TP*GP*GP*TP*AP*GP*AP*GP*AP*TP*TP*TP*TP*TP*CP*TP*TP*AP*GP*C)-3'), ...
Authors:Cherepanov, P, Nans, A, Cook, N.
Deposit date:2019-06-05
Release date:2020-02-05
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:Structural basis of second-generation HIV integrase inhibitor action and viral resistance.
Science, 367, 2020
6QT9
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BU of 6qt9 by Molmil
Cryo-EM structure of SH1 full particle.
Descriptor: ORF 24, ORF 25, ORF 31, ...
Authors:De Colibus, L, Roine, E, Walter, T.S, Ilca, S.L, Wang, X, Wang, N, Roseman, A.M, Bamford, D, Huiskonen, J.T, Stuart, D.I.
Deposit date:2019-02-22
Release date:2019-04-10
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Assembly of complex viruses exemplified by a halophilic euryarchaeal virus.
Nat Commun, 10, 2019
4ZA6
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BU of 4za6 by Molmil
Structure of the R. erythropolis transcriptional repressor QsdR from TetR family
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:El Sahili, A, Morera, S.
Deposit date:2015-04-13
Release date:2015-10-21
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Natural Guided Genome Engineering Reveals Transcriptional Regulators Controlling Quorum-Sensing Signal Degradation.
Plos One, 10, 2015
5NAO
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BU of 5nao by Molmil
NMR structure of TLR4 transmembrane domain (624-657) in DPC micelles
Descriptor: Toll-like receptor 4
Authors:Mineev, K.S, Goncharuk, S.A, Goncharuk, M.V, Arseniev, A.S.
Deposit date:2017-02-28
Release date:2018-03-21
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Spatial structure of TLR4 transmembrane domain in bicelles provides the insight into the receptor activation mechanism.
Sci Rep, 7, 2017
6WMP
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BU of 6wmp by Molmil
F. tularensis RNAPs70-iglA DNA complex
Descriptor: DNA NT-strand, DNA T-strand, DNA-directed RNA polymerase subunit alpha 1, ...
Authors:Travis, B.A, Brennan, R.G, Schumacher, M.A.
Deposit date:2020-04-21
Release date:2020-11-11
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Structural Basis for Virulence Activation of Francisella tularensis.
Mol.Cell, 81, 2021
5IUB
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BU of 5iub by Molmil
Crystal structure of stabilized A2A adenosine receptor A2AR-StaR2-bRIL in complex with compound 12x at 2.1A resolution
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a, ...
Authors:Segala, E, Guo, D, Cheng, R.K.Y, Bortolato, A, Deflorian, F, Dore, A.S, Errey, J.C, Heitman, L.H, Ijzerman, A.P, Marshall, F.H, Cooke, R.M.
Deposit date:2016-03-17
Release date:2016-06-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Controlling the Dissociation of Ligands from the Adenosine A2A Receptor through Modulation of Salt Bridge Strength.
J.Med.Chem., 59, 2016
7UF5
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BU of 7uf5 by Molmil
RibB from Vibrio cholera bound with intermediate 2 in the reaction cycle and the products DHBP and formate
Descriptor: (2R)-2-(dihydroxymethyl)-2-hydroxy-3-oxobutyl dihydrogen phosphate, (2R)-2-hydroxy-3-oxobutyl dihydrogen phosphate, 3,4-dihydroxy-2-butanone 4-phosphate synthase, ...
Authors:Kenjic, N, Meneely, K.M, Lamb, A.L.
Deposit date:2022-03-22
Release date:2022-07-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Evidence for the Chemical Mechanism of RibB (3,4-Dihydroxy-2-butanone 4-phosphate Synthase) of Riboflavin Biosynthesis.
J.Am.Chem.Soc., 144, 2022
6MOR
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BU of 6mor by Molmil
Crystal Structure of the All-Trans Retinal-Bound R111K:Y134F:T54V:R132Q:P39Y:R59Y:L121Y Mutant of Human Cellular Retinoic Acid Binding Protein II in the Dark at 1.79 Angstrom Resolution
Descriptor: Cellular retinoic acid-binding protein 2, RETINAL
Authors:Ghanbarpour, A, Geiger, J.
Deposit date:2018-10-04
Release date:2019-01-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Mimicking Microbial Rhodopsin Isomerization in a Single Crystal.
J. Am. Chem. Soc., 141, 2019
7CU0
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BU of 7cu0 by Molmil
Crystal structure of Streptomyces albogriseolus flavin-dependent tryptophan 6-halogenase Thal in complex with tryptophan
Descriptor: TRYPTOPHAN, Tryptophan 6-halogenase
Authors:Chitnumsub, P, Jaruwat, A, Phintha, A, Chaiyen, P.
Deposit date:2020-08-20
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Dissecting the low catalytic capability of flavin-dependent halogenases.
J.Biol.Chem., 296, 2020
6MP1
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BU of 6mp1 by Molmil
Crystal structures of the murine class I major histocompatibility complex H-2Db in complex with the mutant TRP1-K8 peptide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, TRP1-K8 peptide, Beta-2-microglobulin,H-2 class I histocompatibility antigen, ...
Authors:Clancy-Thompson, E, Devlin, C.A, Birnbaum, M.E, Dougan, S.K.
Deposit date:2018-10-05
Release date:2018-11-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.211 Å)
Cite:Altered Binding of Tumor Antigenic Peptides to MHC Class I Affects CD8+T Cell-Effector Responses.
Cancer Immunol Res, 6, 2018
6QV8
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BU of 6qv8 by Molmil
Staphylococcus aureus superoxide dismutase SodM double mutant
Descriptor: MANGANESE (II) ION, Superoxide dismutase
Authors:Basle, A, Barwinska-Sendra, A, Waldron, K.
Deposit date:2019-03-01
Release date:2020-03-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:An evolutionary path to altered cofactor specificity in a metalloenzyme.
Nat Commun, 11, 2020
6MQG
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BU of 6mqg by Molmil
Crystal structure of KRAS V14I-GDP demonstrating open switch 1 conformation - Form 1
Descriptor: GTPase KRas, GUANOSINE-5'-DIPHOSPHATE
Authors:Bera, A.K, Westover, K.D.
Deposit date:2018-10-09
Release date:2019-07-31
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural basis of the atypical activation mechanism of KRASV14I.
J.Biol.Chem., 294, 2019
8WB8
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BU of 8wb8 by Molmil
Crystal Structure of the shaft pilin LrpA from Ligilactobacillus ruminis - orthorhombic form
Descriptor: LPXTG-motif cell wall anchor domain protein
Authors:Prajapati, A, Palva, A, von Ossowski, I, Krishnan, V.
Deposit date:2023-09-09
Release date:2024-07-10
Last modified:2024-07-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of the N-terminal domain of the backbone pilin LrpA reveals a new closure-and-twist motion for assembling dynamic pili in Ligilactobacillus ruminis.
Acta Crystallogr D Struct Biol, 80, 2024
7UEZ
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BU of 7uez by Molmil
Apo RibB from Vibrio cholera
Descriptor: 3,4-dihydroxy-2-butanone 4-phosphate synthase
Authors:Kenjic, N, Meneely, K.M, Lamb, A.L.
Deposit date:2022-03-22
Release date:2022-07-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Evidence for the Chemical Mechanism of RibB (3,4-Dihydroxy-2-butanone 4-phosphate Synthase) of Riboflavin Biosynthesis.
J.Am.Chem.Soc., 144, 2022
6MRD
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BU of 6mrd by Molmil
ADP-bound human mitochondrial Hsp60-Hsp10 half-football complex
Descriptor: 10 kDa heat shock protein, mitochondrial, 60 kDa heat shock protein, ...
Authors:Gomez-Llorente, Y, Jebara, F, Patra, M, Malik, R, Nissemblat, S, Azem, A, Hirsch, J.A, Ubarretxena-Belandia, I.
Deposit date:2018-10-12
Release date:2020-04-15
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.82 Å)
Cite:Structural basis for active single and double ring complexes in human mitochondrial Hsp60-Hsp10 chaperonin.
Nat Commun, 11, 2020
5NXD
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BU of 5nxd by Molmil
LIM Domain Kinase 2 (LIMK2) In Complex With TH-300
Descriptor: 1,2-ETHANEDIOL, 4-[(3-chlorophenyl)sulfamoyl]-~{N}-(phenylmethyl)-~{N}-propyl-benzamide, LIM domain kinase 2
Authors:Mathea, S, Salah, E, Hanke, T, Newman, J.A, Oerum, S, Wang, D, Burgess-Brown, N, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Bullock, A.N, Knapp, S.
Deposit date:2017-05-10
Release date:2017-05-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:LIM Domain Kinase 2 (LIMK2)In Complex With TH-300
To Be Published
8VCJ
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BU of 8vcj by Molmil
CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 7:2:1 stoichiometry from E. coli Tn7 bound to ATPgS and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA, MAGNESIUM ION, ...
Authors:Shen, Y, Guarne, A.
Deposit date:2023-12-14
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Assembly of the Tn7 targeting complex by a regulated stepwise process.
Mol.Cell, 84, 2024
8V55
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BU of 8v55 by Molmil
Human mitochondrial DNA polymerase gamma bound to a replication fork in an open conformation
Descriptor: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ...
Authors:Riccio, A.A, Krahn, J.M, Bouvette, J, Borgnia, M.J, Copeland, W.C.
Deposit date:2023-11-30
Release date:2024-07-10
Last modified:2024-07-31
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Coordinated DNA polymerization by Pol gamma and the region of LonP1 regulated proteolysis.
Nucleic Acids Res., 52, 2024
6WZ2
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BU of 6wz2 by Molmil
Co-bound structure of an engineered protein trimer, TriCyt3
Descriptor: CHLORIDE ION, COBALT (II) ION, HEME C, ...
Authors:Tezcan, F.A, Kakkis, A.
Deposit date:2020-05-13
Release date:2020-09-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.0006 Å)
Cite:Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites.
Angew.Chem.Int.Ed.Engl., 59, 2020
8EBZ
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BU of 8ebz by Molmil
Crystal Structure of GMPPNP-bound KRAS-G13D mutant at 1.2 Ang resolution
Descriptor: Isoform 2B of GTPase KRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
Authors:Chan, A.H, Simanshu, D.K.
Deposit date:2022-08-31
Release date:2023-06-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Reduced dynamic complexity allows structure elucidation of an excited state of KRAS G13D .
Commun Biol, 6, 2023
8V54
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BU of 8v54 by Molmil
Engaged conformation of the human mitochondrial DNA polymerase gamma bound to DNA
Descriptor: DNA (25-MER), DNA (44-MER), DNA polymerase subunit gamma-1, ...
Authors:Riccio, A.A, Krahn, J.M, Bouvette, J, Borgnia, J.M, Copeland, W.C.
Deposit date:2023-11-30
Release date:2024-07-10
Last modified:2024-07-31
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Coordinated DNA polymerization by Pol gamma and the region of LonP1 regulated proteolysis.
Nucleic Acids Res., 52, 2024
8DQ2
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BU of 8dq2 by Molmil
X-ray crystal structure of Hansschlegelia quercus lanmodulin (LanM) with lanthanum (III) bound at pH 7
Descriptor: CITRIC ACID, EF-hand domain-containing protein, LANTHANUM (III) ION, ...
Authors:Jung, J.J, Lin, C.-Y, Boal, A.K.
Deposit date:2022-07-18
Release date:2023-06-07
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Enhanced rare-earth separation with a metal-sensitive lanmodulin dimer.
Nature, 618, 2023
6X1L
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BU of 6x1l by Molmil
The crystal structure of a functional uncharacterized protein KP1_0663 from Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Descriptor: WbbZ protein
Authors:Tan, K, Wu, R, Endres, M, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-05-19
Release date:2020-06-03
Last modified:2023-06-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:A Structural Systems Biology Approach to High-Risk CG23 Klebsiella pneumoniae.
Microbiol Resour Announc, 12, 2023
6X1Q
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BU of 6x1q by Molmil
1.8 Angstrom resolution structure of b-galactosidase with a 200 kV cryoARM electron microscope
Descriptor: Beta-galactosidase, MAGNESIUM ION, SODIUM ION
Authors:Merk, A, Fukumura, T, Zhu, X, Darling, J, Grisshammer, R, Ognjenovic, J, Subramaniam, S.
Deposit date:2020-05-19
Release date:2020-07-01
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (1.8 Å)
Cite:1.8 angstrom resolution structure of beta-galactosidase with a 200 kV CRYO ARM electron microscope.
Iucrj, 7, 2020

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