Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 88608 results

6WAM
DownloadVisualize
BU of 6wam by Molmil
Structure of Acinetobacter baumannii Cap4 SAVED/CARF-domain containing receptor
Descriptor: SAVED domain-containing protein, SULFATE ION
Authors:Lowey, B, Whiteley, A.T, Keszei, A.F.A, Morehouse, B.R, Antine, S.P, Cabrera, V, Schwede, F, Mekalanos, J.J, Shao, S, Lee, A.S.Y, Kranzusch, P.J.
Deposit date:2020-03-25
Release date:2020-06-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:CBASS Immunity Uses CARF-Related Effectors to Sense 3'-5'- and 2'-5'-Linked Cyclic Oligonucleotide Signals and Protect Bacteria from Phage Infection.
Cell, 182, 2020
6VZR
DownloadVisualize
BU of 6vzr by Molmil
Engineered TTLL6 bound to the initiation analog
Descriptor: (2~{S})-2-[[[(3~{R})-3-acetamido-4-(ethylamino)-4-oxidanylidene-butyl]-phosphonooxy-phosphoryl]methyl]pentanedioic acid, ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, ...
Authors:Mahalingan, K.K, Keenen, E.K, Strickland, M, Li, Y, Liu, Y, Ball, H.L, Tanner, M.E, Tjandra, N, Roll-Mecak, A.
Deposit date:2020-02-28
Release date:2020-08-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for polyglutamate chain initiation and elongation by TTLL family enzymes.
Nat.Struct.Mol.Biol., 27, 2020
2W1U
DownloadVisualize
BU of 2w1u by Molmil
A family 32 carbohydrate-binding module, from the Mu toxin produced by Clostridium perfringens, in complex with beta-D-glcNAc-beta(1,3) galNAc
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose, ACETATE ION, ...
Authors:Ficko-Blean, E, Boraston, A.B.
Deposit date:2008-10-20
Release date:2009-05-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:N-Acetylglucosamine Recognition by a Family 32 Carbohydrate-Binding Module from Clostridium Perfringens Nagh.
J.Mol.Biol., 390, 2009
7B3U
DownloadVisualize
BU of 7b3u by Molmil
OXA-10 beta-lactamase with covalent modification
Descriptor: Beta-lactamase OXA-10, DI(HYDROXYETHYL)ETHER, SODIUM ION, ...
Authors:Lang, P.A, Brem, J, Schofield, C.J.
Deposit date:2020-12-01
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.598 Å)
Cite:Studies on enmetazobactam clarify mechanisms of widely used beta-lactamase inhibitors.
Proc.Natl.Acad.Sci.USA, 119, 2022
1JI3
DownloadVisualize
BU of 1ji3 by Molmil
CRYSTAL STRUCTURE OF THE FIRST THERMOSTABLE BACTERIAL LIPASE FROM BACILLUS STEAROTHERMOPHILUS
Descriptor: CALCIUM ION, ZINC ION, lipase
Authors:Tyndall, J.D.A, Sinchaikul, S, Fothergill-Gilmore, L.A, Taylor, P, Walkinshaw, M.D.
Deposit date:2001-06-29
Release date:2002-11-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of a Thermostable Lipase from Bacillus stearothermophilus P1
J.Mol.Biol., 323, 2002
1JXX
DownloadVisualize
BU of 1jxx by Molmil
CRAMBIN MIXED SEQUENCE FORM AT 200 K. PROTEIN/WATER SUBSTATES
Descriptor: Crambin, ETHANOL
Authors:Teeter, M.M, Yamano, A, Stec, B, Mohanty, U.
Deposit date:2001-09-10
Release date:2001-10-31
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (0.89 Å)
Cite:On the nature of a glassy state of matter in a hydrated protein: Relation to protein function.
Proc.Natl.Acad.Sci.USA, 98, 2001
7B76
DownloadVisualize
BU of 7b76 by Molmil
Crystal structure of the effector AvrLm5-9 from Leptosphaeria maculans
Descriptor: Avirulence protein LmJ1, IODIDE ION
Authors:Lazar, N, Mesarich, C, Petit-Houdenot, Y, Talbi, N, Li de la Sierra-Gallay, I, Zelie, E, Blondeau, K, Gracy, J, Ollivier, B, van de Wouw, A, Balesdent, M.H, Idnurm, A, van Tilbeurgh, H, Fudal, I.
Deposit date:2020-12-09
Release date:2022-01-12
Last modified:2023-03-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A new family of structurally conserved fungal effectors displays epistatic interactions with plant resistance proteins.
Plos Pathog., 18, 2022
2W4Z
DownloadVisualize
BU of 2w4z by Molmil
Caulobacter bacteriophage 5
Descriptor: ADENOSINE MONOPHOSPHATE, CALCIUM ION, CAULOBACTER BACTERIOPHAGE 5
Authors:Plevka, P, Kazaks, A, Dishlers, A, Liljas, L, Tars, K.
Deposit date:2008-12-02
Release date:2009-07-14
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:The Structure of Bacteriophage Phicb5 Reveals a Role of the RNA Genome and Metal Ions in Particle Stability and Assembly.
J.Mol.Biol., 391, 2009
1K25
DownloadVisualize
BU of 1k25 by Molmil
PBP2x from a Highly Penicillin-resistant Streptococcus pneumoniae Clinical Isolate
Descriptor: low-affinity PENICILLIN-BINDING PROTEIN 2X
Authors:Dessen, A, Mouz, N, Hopkins, J, Dideberg, O.
Deposit date:2001-09-26
Release date:2001-10-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of PBP2x from a highly penicillin-resistant Streptococcus pneumoniae clinical isolate: a mosaic framework containing 83 mutations.
J.Biol.Chem., 276, 2001
6W3K
DownloadVisualize
BU of 6w3k by Molmil
Structure of unphosphorylated human IRE1 bound to G-9807
Descriptor: 4-[5-[2,6-bis(fluoranyl)phenyl]-2~{H}-pyrazolo[3,4-b]pyridin-3-yl]-2-(4-oxidanylpiperidin-1-yl)-1~{H}-pyrimidin-6-one, Serine/threonine-protein kinase/endoribonuclease IRE1
Authors:Lammens, A, Wang, W, Ferri, E, Rudolph, J.
Deposit date:2020-03-09
Release date:2020-12-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Activation of the IRE1 RNase through remodeling of the kinase front pocket by ATP-competitive ligands.
Nat Commun, 11, 2020
4IOF
DownloadVisualize
BU of 4iof by Molmil
Crystal structure analysis of Fab-bound human Insulin Degrading Enzyme (IDE)
Descriptor: Fab-bound IDE, heavy chain, light chain, ...
Authors:McCord, L.A, Liang, W.G, Hoey, R, Dowdell, E, Koide, A, Koide, S, Tang, W.J.
Deposit date:2013-01-07
Release date:2013-07-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.353 Å)
Cite:Conformational states and recognition of amyloidogenic peptides of human insulin-degrading enzyme.
Proc.Natl.Acad.Sci.USA, 110, 2013
3ZUF
DownloadVisualize
BU of 3zuf by Molmil
Padron off (non-fluorescent) Btrans
Descriptor: FLUORESCENT PROTEIN DRONPA
Authors:REGIS Faro, A, Carpentier, P, Bourgeois, D.
Deposit date:2011-07-18
Release date:2011-08-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Low-Temperature Chromophore Isomerization Reveals the Photoswitching Mechanism of the Fluorescent Protein Padron.
J.Am.Chem.Soc., 133, 2011
5DAV
DownloadVisualize
BU of 5dav by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase AsqJ in complex with 4-Methoxydehydrocyclopeptin
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-Methoxydehydrocyclopeptin, BROMIDE ION, ...
Authors:Groll, M, Braeuer, A.
Deposit date:2015-08-20
Release date:2015-11-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the Dioxygenase AsqJ: Mechanistic Insights into a One-Pot Multistep Quinolone Antibiotic Biosynthesis.
Angew.Chem.Int.Ed.Engl., 55, 2016
3ZCN
DownloadVisualize
BU of 3zcn by Molmil
Fic protein from SHEWANELLA ONEIDENSIS in complex with ATP
Descriptor: ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE SOFIC, ADENOSINE-5'-TRIPHOSPHATE
Authors:Goepfert, A, Schirmer, T.
Deposit date:2012-11-21
Release date:2013-06-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold.
Plos One, 8, 2013
3ZID
DownloadVisualize
BU of 3zid by Molmil
CetZ from Methanosaeta thermophila strain DSM 6194
Descriptor: GUANOSINE-5'-DIPHOSPHATE, TUBULIN/FTSZ, GTPASE
Authors:Aylett, C.H.S, Amos, L.A, Lowe, J.
Deposit date:2013-01-08
Release date:2013-08-14
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Cetz Tubulin-Like Proteins Control Archaeal Cell Shape
Nature, 519, 2015
3ZL1
DownloadVisualize
BU of 3zl1 by Molmil
A thiazolyl-mannoside bound to FimH, monoclinic space group
Descriptor: CHLORIDE ION, N-{5-[(1R)-1-hydroxyethyl]-1,3-thiazol-2-yl}-alpha-D-mannopyranosylamine, PROTEIN FIMH
Authors:Brument, S, Sivignon, A, Dumych, T.I, Moreau, N, Roos, G, Guerardel, Y, Chalopin, T, Deniaud, D, Bilyy, R.O, Darfeuille-Michaud, A, Bouckaert, J, Gouin, S.G.
Deposit date:2013-01-27
Release date:2013-07-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.551 Å)
Cite:Thiazolylaminomannosides as Potent Antiadhesives of Type 1 Piliated Escherichia Coli Isolated from Crohn'S Disease Patients.
J.Med.Chem., 56, 2013
1JM6
DownloadVisualize
BU of 1jm6 by Molmil
Pyruvate dehydrogenase kinase, isozyme 2, containing ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Pyruvate dehydrogenase kinase, ...
Authors:Steussy, C.N, Popov, K.M, Bowker-Kinley, M.M, Sloan, R.B, Harris, R.A, Hamilton, J.A.
Deposit date:2001-07-17
Release date:2001-10-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of pyruvate dehydrogenase kinase. Novel folding pattern for a serine protein kinase.
J.Biol.Chem., 276, 2001
2VNN
DownloadVisualize
BU of 2vnn by Molmil
Human BACE-1 in complex with 7-ethyl-N-((1S,2R)-2-hydroxy-1-(phenylmethyl)-3-(((3-(trifluoromethyl)phenyl)methyl)amino)propyl)-1- methyl-3,4-dihydro-1H-(1,2,5)thiadiazepino(3,4,5-hi)indole-9- carboxamide 2,2-dioxide
Descriptor: BETA-SECRETASE 1, N-[(1S,2R)-1-benzyl-2-hydroxy-3-{[3-(trifluoromethyl)benzyl]amino}propyl]-7-ethyl-1-methyl-3,4-dihydro-1H-[1,2,5]thiadiazepino[3,4,5-hi]indole-9-carboxamide 2,2-dioxide
Authors:Charrier, N, Clarke, B, Cutler, L, Demont, E, Dingwall, C, Dunsdon, R, East, P, Hawkins, J, Howes, C, Hussain, I, Jeffrey, P, Maile, G, Matico, R, Mosley, J, Naylor, A, OBrien, A, Redshaw, S, Rowland, P, Soleil, V, Smith, K.J, Sweitzer, S, Theobald, P, Vesey, D, Walter, D.S, Wayne, G.
Deposit date:2008-02-05
Release date:2008-05-20
Last modified:2019-05-15
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Second Generation of Hydroxyethylamine Bace-1 Inhibitors: Optimizing Potency and Oral Bioavailability.
J.Med.Chem., 51, 2008
3ZUJ
DownloadVisualize
BU of 3zuj by Molmil
Padron on (fluorescent) ABcis
Descriptor: FLUORESCENT PROTEIN DRONPA
Authors:REGIS Faro, A, Carpentier, P, Bourgeois, D.
Deposit date:2011-07-19
Release date:2011-08-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.345 Å)
Cite:Low-Temperature Chromophore Isomerization Reveals the Photoswitching Mechanism of the Fluorescent Protein Padron.
J.Am.Chem.Soc., 133, 2011
1JOS
DownloadVisualize
BU of 1jos by Molmil
Ribosome Binding Factor A(rbfA)
Descriptor: RIBOSOME-BINDING FACTOR A
Authors:Bonander, N, Tordova, M, Howard, A.J, Eisenstein, E, Gilliland, G.L, Structure 2 Function Project (S2F)
Deposit date:2001-07-30
Release date:2003-06-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The 1.7-A Crystal Structure of HI1288 - Ribosome Binding Factor A (rbfA), a Cold Response Protein
To be Published
1JQF
DownloadVisualize
BU of 1jqf by Molmil
Human Transferrin N-Lobe Mutant H249Q
Descriptor: CARBONATE ION, FE (III) ION, POTASSIUM ION, ...
Authors:Baker, H.M, Mason, A.B, He, Q.-Y, MacGillivray, R.T.A, Baker, E.N.
Deposit date:2001-08-06
Release date:2001-10-17
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Ligand variation in the transferrin family: the crystal structure of the H249Q mutant of the human transferrin N-lobe as a model for iron binding in insect transferrins.
Biochemistry, 40, 2001
1K23
DownloadVisualize
BU of 1k23 by Molmil
Inorganic Pyrophosphatase (Family II) from Bacillus subtilis
Descriptor: MANGANESE (II) ION, Manganese-dependent inorganic pyrophosphatase
Authors:Ahn, S, Milner, A.J, Futterer, K, Konopka, M, Ilias, M, Young, T.W, White, S.A.
Deposit date:2001-09-26
Release date:2001-10-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:The "open" and "closed" structures of the type-C inorganic pyrophosphatases from Bacillus subtilis and Streptococcus gordonii.
J.Mol.Biol., 313, 2001
2VWY
DownloadVisualize
BU of 2vwy by Molmil
ephB4 kinase domain inhibitor complex
Descriptor: EPHRIN TYPE-B RECEPTOR 4, MAGNESIUM ION, N'-(5-chloro-1,3-benzodioxol-4-yl)-N-(3-methylsulfonylphenyl)pyrimidine-2,4-diamine
Authors:Read, J, Brassington, C.A, Green, I, McCall, E.J, Valentine, A.L, Barratt, D, Leach, A.G, Kettle, J.G.
Deposit date:2008-06-30
Release date:2008-10-28
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Inhibitors of the Tyrosine Kinase Ephb4. Part 2: Structure-Based Discovery and Optimisation of 3,5-Bis Substituted Anilinopyrimidines.
Bioorg.Med.Chem.Lett., 18, 2008
4ID9
DownloadVisualize
BU of 4id9 by Molmil
Crystal structure of a short-chain dehydrogenase/reductase superfamily protein from agrobacterium tumefaciens (TARGET EFI-506441) with bound nad, monoclinic form 1
Descriptor: ALANINE, CHLORIDE ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Vetting, M.W, Groninger-Poe, F, Morisco, L.L, Wasserman, S.R, Sojitra, S, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2012-12-12
Release date:2012-12-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a short-chain dehydrogenase/reductase superfamily protein from agrobacterium tumefaciens (TARGET EFI-506441) with bound nad, monoclinic form 1
To be Published
2VZS
DownloadVisualize
BU of 2vzs by Molmil
Chitosan Product complex of Amycolatopsis orientalis exo-chitosanase CsxA
Descriptor: 2-amino-2-deoxy-beta-D-glucopyranose, CADMIUM ION, EXO-BETA-D-GLUCOSAMINIDASE, ...
Authors:Lammerts van Bueren, A, Ghinet, M.G, Gregg, K, Fleury, A, Brzezinski, R, Boraston, A.B.
Deposit date:2008-08-05
Release date:2008-10-14
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The Structural Basis of Substrate Recognition in an Exo-Beta-D-Glucosaminidase Involved in Chitosan Hydrolysis.
J.Mol.Biol., 385, 2009

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon