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6UTG
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BU of 6utg by Molmil
Allosteric coupling between alpha-rings of the 20S proteasome, 20S singly capped with a PA26/V230F
分子名称: Proteasome activator protein PA26, Proteasome subunit alpha, Proteasome subunit beta
著者Yu, Z, Cheng, Y.
登録日2019-10-29
公開日2020-09-09
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Allosteric coupling between alpha-rings of the 20S proteasome.
Nat Commun, 11, 2020
4B10
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BU of 4b10 by Molmil
Plasmodium vivax N-myristoyltransferase with a non-hydrolysable co- factor
分子名称: 2-oxopentadecyl-CoA, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
著者Yu, Z, Brannigan, J.A, Moss, D.K, Brzozowski, A.M, Wilkinson, A.J, Holder, A.A, Tate, E.W, Leatherbarrow, R.J.
登録日2012-07-06
公開日2012-10-17
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Design and Synthesis of Inhibitors of Plasmodium Falciparum N-Myristoyltransferase, a Promising Target for Anti-Malarial Drug Discovery.
J.Med.Chem., 55, 2012
4B13
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BU of 4b13 by Molmil
Plasmodium vivax N-myristoyltransferase with a bound benzofuran inhibitor (compound 25)
分子名称: 2-oxopentadecyl-CoA, 4-{[2-(3-benzyl-1,2,4-oxadiazol-5-yl)-3-methyl-1-benzofuran-4-yl]oxy}piperidine, CHLORIDE ION, ...
著者Yu, Z, Brannigan, J.A, Moss, D.K, Brzozowski, A.M, Wilkinson, A.J, Holder, A.A, Tate, E.W, Leatherbarrow, R.J.
登録日2012-07-06
公開日2012-10-17
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Design and Synthesis of Inhibitors of Plasmodium Falciparum N-Myristoyltransferase, a Promising Target for Antimalarial Drug Discovery.
J.Med.Chem., 55, 2012
4B11
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BU of 4b11 by Molmil
Plasmodium vivax N-myristoyltransferase with a bound benzofuran inhibitor (compound 13)
分子名称: 2-oxopentadecyl-CoA, 3-methyl-N-(naphthalen-1-ylmethyl)-4-piperidin-4-yloxy-1-benzofuran-2-carboxamide, CHLORIDE ION, ...
著者Yu, Z, Brannigan, J.A, Moss, D.K, Brzozowski, A.M, Wilkinson, A.J, Holder, A.A, Tate, E.W, Leatherbarrow, R.J.
登録日2012-07-06
公開日2012-10-17
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Design and Synthesis of Inhibitors of Plasmodium Falciparum N-Myristoyltransferase, a Promising Target for Anti-Malarial Drug Discovery.
J.Med.Chem., 55, 2012
4B12
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BU of 4b12 by Molmil
Plasmodium vivax N-myristoyltransferase with a bound benzofuran inhibitor (compound 23)
分子名称: 1-[3-methyl-4-(piperidin-4-yloxy)-1-benzofuran-2-yl]-3-phenylpropan-1-one, 2-oxopentadecyl-CoA, CHLORIDE ION, ...
著者Yu, Z, Brannigan, J.A, Moss, D.K, Brzozowski, A.M, Wilkinson, A.J, Holder, A.A, Tate, E.W, Leatherbarrow, R.J.
登録日2012-07-06
公開日2012-10-17
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Design and Synthesis of Inhibitors of Plasmodium Falciparum N-Myristoyltransferase, a Promising Target for Anti-Malarial Drug Discovery.
J.Med.Chem., 55, 2012
4B14
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BU of 4b14 by Molmil
Plasmodium vivax N-myristoyltransferase with a bound benzofuran inhibitor (compound 26)
分子名称: 2-oxopentadecyl-CoA, 3-methoxybenzyl 3-methyl-4-(piperidin-4-yloxy)-1-benzofuran-2-carboxylate, CHLORIDE ION, ...
著者Yu, Z, Brannigan, J.A, Moss, D.K, Brzozowski, A.M, Wilkinson, A.J, Holder, A.A, Tate, E.W, Leatherbarrow, R.J.
登録日2012-07-06
公開日2012-10-17
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Design and Synthesis of Inhibitors of Plasmodium Falciparum N-Myristoyltransferase, a Promising Target for Anti-Malarial Drug Discovery.
J.Med.Chem., 55, 2012
4UFW
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BU of 4ufw by Molmil
Plasmodium vivax N-myristoyltransferase in complex with a pyridyl inhibitor (compound 22)
分子名称: 2-oxopentadecyl-CoA, 4-chloranyl-N-[2-(3-methoxyphenyl)ethanimidoyl]-2-piperidin-4-yloxy-benzamide, CHLORIDE ION, ...
著者Yu, Z, Brannigan, J.A, Rangachari, K, Heal, W.P, Wilkinson, A.J, Holder, A.A, Tate, E.W, Leatherbarrow, R.J.
登録日2015-03-19
公開日2016-02-03
最終更新日2016-04-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Discovery of Pyridyl-Based Inhibitors of Plasmodium Falciparum N-Myristoyltransferase
Medchemcomm, 6, 2015
4UFX
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BU of 4ufx by Molmil
Plasmodium vivax N-myristoyltransferase in complex with a pyridyl inhibitor (compound 19)
分子名称: 2-oxopentadecyl-CoA, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
著者Yu, Z, Brannigan, J.A, Rangachari, K, Heal, W.P, Wilkinson, A.J, Holder, A.A, Tate, E.W, Leatherbarrow, R.J.
登録日2015-03-19
公開日2016-02-03
最終更新日2016-04-20
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Discovery of Pyridyl-Based Inhibitors of Plasmodium Falciparum N-Myristoyltransferase
Medchemcomm, 6, 2015
4UFV
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BU of 4ufv by Molmil
Plasmodium vivax N-myristoyltransferase in complex with a pyridyl inhibitor (compound 18)
分子名称: 2-oxopentadecyl-CoA, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
著者Yu, Z, Brannigan, J.A, Rangachari, K, Heal, W.P, Wilkinson, A.J, Holder, A.A, Tate, E.W, Leatherbarrow, R.J.
登録日2015-03-19
公開日2016-02-03
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Discovery of Pyridyl-Based Inhibitors of Plasmodium Falciparum N-Myristoyltransferase
Medchemcomm, 6, 2015
2GKS
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BU of 2gks by Molmil
Crystal Structure of the Bi-functional ATP Sulfurylase-APS Kinase from Aquifex aeolicus, a Chemolithotrophic Thermophile
分子名称: ADENOSINE-5'-DIPHOSPHATE, Bifunctional SAT/APS kinase
著者Yu, Z, MacRea, I.J, Lansdon, E.B, Segel, I.H, Fisher, A.J.
登録日2006-04-03
公開日2007-03-06
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Crystal structure of the bifunctional ATP sulfurylase-APS kinase from the chemolithotrophic thermophile Aquifex aeolicus.
J.Mol.Biol., 365, 2007
2OQ2
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BU of 2oq2 by Molmil
Crystal structure of yeast PAPS reductase with PAP, a product complex
分子名称: ADENOSINE-3'-5'-DIPHOSPHATE, Phosphoadenosine phosphosulfate reductase
著者Yu, Z, Fisher, A.J.
登録日2007-01-31
公開日2008-01-15
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of Saccharomyces cerevisiae 3'-phosphoadenosine-5'-phosphosulfate reductase complexed with adenosine 3',5'-bisphosphate.
Biochemistry, 47, 2008
8D51
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BU of 8d51 by Molmil
Parathyroid hormone 1 receptor extracellular domain complexed with a peptide ligand containing beta-3-homotryptophan
分子名称: 1,2-ETHANEDIOL, PTHrP[1-36], Parathyroid hormone/parathyroid hormone-related peptide receptor, ...
著者Yu, Z, Kreitler, D.F, Gellman, S.H.
登録日2022-06-03
公開日2023-06-14
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Harnessing Aromatic-Histidine Interactions through Synergistic Backbone Extension and Side Chain Modification.
Angew.Chem.Int.Ed.Engl., 62, 2023
8D52
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BU of 8d52 by Molmil
Parathyroid hormone 1 receptor extracellular domain complexed with a peptide ligand containing (2-naphthyl)-beta-3-homoalanine
分子名称: 1,2-ETHANEDIOL, PTHrP[1-36], Parathyroid hormone/parathyroid hormone-related peptide receptor, ...
著者Yu, Z, Kreitler, D.F, Gellman, S.H.
登録日2022-06-03
公開日2023-06-14
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Harnessing Aromatic-Histidine Interactions through Synergistic Backbone Extension and Side Chain Modification.
Angew.Chem.Int.Ed.Engl., 62, 2023
8H1C
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BU of 8h1c by Molmil
Cryo-EM structure of Oryza sativa plastid glycyl-tRNA synthetase in complex with two tRNAs (one in tRNA binding state and the other in tRNA locked state)
分子名称: Glycine--tRNA ligase, tRNA(gly) (74-MER)
著者Yu, Z, Wu, Z, Li, Y, Lu, G, Lin, J.
登録日2022-10-02
公開日2023-04-26
最終更新日2023-05-24
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献Structural basis of a two-step tRNA recognition mechanism for plastid glycyl-tRNA synthetase.
Nucleic Acids Res., 51, 2023
4OWP
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BU of 4owp by Molmil
Crystal structure of rpn11 in a heterodimer complex with rpn8, representing the active portion of the proteasome lid.
分子名称: 26S proteasome regulatory subunit RPN11, 26S proteasome regulatory subunit RPN8, ZINC ION
著者Yu, Z, Mansour, W, Nakasone, M.A, Glickman, M.H, Dvir, H.
登録日2014-02-03
公開日2015-08-05
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal structure of rpn11 in a heterodimer complex with rpn8, representing the active portion of the proteasome lid.In preparation.
To Be Published
7TZO
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BU of 7tzo by Molmil
The apo structure of human mTORC2 complex
分子名称: Rapamycin-insensitive companion of mTOR, Serine/threonine-protein kinase mTOR, Target of rapamycin complex 2 subunit MAPKAP1, ...
著者Yu, Z, Chen, J, Pearce, D.
登録日2022-02-16
公開日2023-01-11
実験手法ELECTRON MICROSCOPY (3.28 Å)
主引用文献Interactions between mTORC2 core subunits Rictor and mSin1 dictate selective and context-dependent phosphorylation of substrate kinases SGK1 and Akt.
J.Biol.Chem., 298, 2022
8HQL
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BU of 8hql by Molmil
Crystal structure of mouse SNX25 PX domain
分子名称: ACETIC ACID, CHLORIDE ION, GLYCEROL, ...
著者Yu, Z, Xu, J, Liu, J.
登録日2022-12-13
公開日2023-12-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of mouse SNX25 PX domain
To Be Published
7XK1
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BU of 7xk1 by Molmil
Cryo-EM structure of Oryza sativa plastid glycyl-tRNA synthetase in complex with two tRNAs (both in tRNA binding states)
分子名称: Glycine--tRNA ligase, tRNA(gly)
著者Yu, Z, Wu, Z, Li, Y, Lu, G, Lin, J.
登録日2022-04-19
公開日2023-05-03
最終更新日2023-05-24
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Structural basis of a two-step tRNA recognition mechanism for plastid glycyl-tRNA synthetase.
Nucleic Acids Res., 51, 2023
7XK0
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BU of 7xk0 by Molmil
Cryo-EM strucrture of Oryza sativa plastid glycyl-tRNA synthetase in complex with tRNA (tRNA locked state)
分子名称: Glycine--tRNA ligase, tRNA(gly)
著者Yu, Z, Wu, Z, Li, Y, Lu, G, Lin, J.
登録日2022-04-19
公開日2023-05-03
最終更新日2023-05-24
実験手法ELECTRON MICROSCOPY (3.59 Å)
主引用文献Structural basis of a two-step tRNA recognition mechanism for plastid glycyl-tRNA synthetase.
Nucleic Acids Res., 51, 2023
7XJZ
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BU of 7xjz by Molmil
Cryo-EM strucrture of Oryza sativa plastid glycyl-tRNA synthetase in complex with tRNA (tRNA binding state)
分子名称: Glycine--tRNA ligase, tRNA(gly)
著者Yu, Z, Wu, Z, Li, Y, Lu, G, Lin, J.
登録日2022-04-19
公開日2023-05-03
最終更新日2023-05-24
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural basis of a two-step tRNA recognition mechanism for plastid glycyl-tRNA synthetase.
Nucleic Acids Res., 51, 2023
7XJY
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BU of 7xjy by Molmil
Cryo-EM structure of Oryza sativa plastid glycyl-tRNA synthetase (apo form)
分子名称: Glycine--tRNA ligase
著者Yu, Z, Wu, Z, Li, Y, Lu, G, Lin, J.
登録日2022-04-19
公開日2023-05-03
最終更新日2023-05-24
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structural basis of a two-step tRNA recognition mechanism for plastid glycyl-tRNA synthetase.
Nucleic Acids Res., 51, 2023
6UTF
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BU of 6utf by Molmil
Allosteric coupling between alpha-rings of the 20S proteasome, archaea 20S proteasome singly capped with a PAN complex
分子名称: Proteasome subunit alpha, Proteasome subunit beta
著者Cheng, Y, Yu, Z.
登録日2019-10-29
公開日2020-09-09
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Allosteric coupling between alpha-rings of the 20S proteasome.
Nat Commun, 11, 2020
6UTH
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BU of 6uth by Molmil
Allosteric coupling between alpha-rings of 20S proteasome, 20S proteasome singly capped with a PA26/E102A_PANc, together with LFP incubation
分子名称: Proteasome activator protein PA26, Proteasome subunit alpha, Proteasome subunit beta
著者Cheng, Y, Yu, Z.
登録日2019-10-29
公開日2020-09-09
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Allosteric coupling between alpha-rings of the 20S proteasome.
Nat Commun, 11, 2020
6UTJ
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BU of 6utj by Molmil
Allosteric couple between alpha rings of the 20S proteasome. 20S proteasome singly capped by PA26/E102A, C-terminus replaced by PAN C-terminus
分子名称: Proteasome activator protein PA26, Proteasome subunit alpha, Proteasome subunit beta
著者Cheng, Y, Yu, Z.
登録日2019-10-29
公開日2020-09-09
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Allosteric coupling between alpha-rings of the 20S proteasome.
Nat Commun, 11, 2020
6UTI
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BU of 6uti by Molmil
Allosteric coupling between alpha-rings of 20S proteasome, 20S proteasome with singly capped PAN complex
分子名称: Proteasome subunit alpha, Proteasome subunit beta
著者Cheng, Y, Yu, Z.
登録日2019-10-29
公開日2020-09-09
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Allosteric coupling between alpha-rings of the 20S proteasome.
Nat Commun, 11, 2020

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