Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2AZX
DownloadVisualize
BU of 2azx by Molmil
Charged and uncharged tRNAs adopt distinct conformations when complexed with human tryptophanyl-tRNA synthetase
分子名称: 72-MER, GLYCEROL, MAGNESIUM ION, ...
著者Yang, X.L, Otero, F.J, Ewalt, K.L, Liu, J, Swairjo, M.A, Kohrer, C, RajBhandary, U.L, Skene, R.J, McRee, D.E, Schimmel, P.
登録日2005-09-12
公開日2006-08-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Two conformations of a crystalline human tRNA synthetase-tRNA complex: implications for protein synthesis.
Embo J., 25, 2006
4XEO
DownloadVisualize
BU of 4xeo by Molmil
Crystal Structure of human AlaRS catalytic domain with R329H mutation
分子名称: '5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE, Alanine--tRNA ligase, cytoplasmic, ...
著者Zhou, H, He, W, Yang, X.L.
登録日2014-12-24
公開日2015-12-30
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献Crystal structure of human AlaRS catalytic domain with R329H mutation
To Be Published
6O76
DownloadVisualize
BU of 6o76 by Molmil
Human cytosolic Histidyl-tRNA synthetase (HisRS) with WHEP domain
分子名称: CHLORIDE ION, Histidine--tRNA ligase, cytoplasmic
著者Kuhle, B, Yang, X.L.
登録日2019-03-07
公開日2019-09-11
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.787 Å)
主引用文献CMT disease severity correlates with mutation-induced open conformation of histidyl-tRNA synthetase, not aminoacylation loss, in patient cells.
Proc.Natl.Acad.Sci.USA, 116, 2019
2ZT8
DownloadVisualize
BU of 2zt8 by Molmil
Crystal structure of human Glycyl-tRNA synthetase (GlyRS) in complex with Gly-AMP analog
分子名称: Glycyl-tRNA synthetase, [(2S,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (aminoacetyl)sulfamate
著者Guo, R.T, Yang, X.L, Schimmel, P.
登録日2008-09-19
公開日2009-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.35 Å)
主引用文献Crystal structures and biochemical analyses suggest unique mechanism and role for human GlyRS in Ap4A homeostasis
To be Published
2ZT5
DownloadVisualize
BU of 2zt5 by Molmil
Crystal structure of human glycyl-trna synthetase (GLYRS) in complex with AP4A (cocrystallized with ATP)
分子名称: BIS(ADENOSINE)-5'-TETRAPHOSPHATE, Glycyl-tRNA synthetase
著者Guo, R.T, Yang, X.L, Schimmel, P.
登録日2008-09-19
公開日2009-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structures and biochemical analyses suggest unique mechanism and role for human GlyRS in Ap4A homeostasis
To be Published
2ZT7
DownloadVisualize
BU of 2zt7 by Molmil
Crystal structure of human Glycyl-tRNA synthetase (GlyRS) in complex with Glycine and ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, GLYCINE, Glycyl-tRNA synthetase
著者Guo, R.T, Yang, X.L, Schimmel, P.
登録日2008-09-19
公開日2009-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structures and biochemical analyses suggest unique mechanism and role for human GlyRS in Ap4A homeostasis
To be Published
2ZT6
DownloadVisualize
BU of 2zt6 by Molmil
Crystal structure of human Glycyl-tRNA synthetase (GlyRS) in complex with AMPCPP
分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, Glycyl-tRNA synthetase
著者Guo, R.T, Yang, X.L, Schimmel, P.
登録日2008-09-19
公開日2009-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.08 Å)
主引用文献Crystal structures and biochemical analyses suggest unique mechanism and role for human GlyRS in Ap4A homeostasis
To be Published
2ZXF
DownloadVisualize
BU of 2zxf by Molmil
Crystal structure of human glycyl-trna synthetase (GLYRS) in complex with AP4A (cocrystallized with AP4A)
分子名称: BIS(ADENOSINE)-5'-TETRAPHOSPHATE, Glycyl-tRNA synthetase
著者Guo, R.T, Yang, X.L, Schimmel, P.
登録日2008-12-23
公開日2009-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Crystal structures and biochemical analyses suggest unique mechanism and role for human GlyRS in Ap4A homeostasis
To be Published
3BJU
DownloadVisualize
BU of 3bju by Molmil
Crystal Structure of tetrameric form of human lysyl-tRNA synthetase
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, LYSINE, ...
著者Guo, M, Yang, X.L, Schimmel, P.
登録日2007-12-04
公開日2008-02-05
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Crystal structure of tetrameric form of human lysyl-tRNA synthetase: Implications for multisynthetase complex formation
Proc.Natl.Acad.Sci.Usa, 105, 2008
4XEM
DownloadVisualize
BU of 4xem by Molmil
Crystal Structure of wild type human AlaRS catalytic domain
分子名称: '5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE, 1,2-ETHANEDIOL, Alanine--tRNA ligase, ...
著者Zhou, H, He, W, Yang, X.L.
登録日2014-12-24
公開日2016-02-17
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.278 Å)
主引用文献Crystal structure of wild type human AlaRS catalytic domain
To Be Published
3G98
DownloadVisualize
BU of 3g98 by Molmil
Crystal Structure of the C-Ala domain from Aquifex aeolicus alanyl-tRNA synthetase
分子名称: Alanyl-tRNA synthetase
著者Guo, M, Yang, X.L, Schimmel, P.
登録日2009-02-13
公開日2009-10-06
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献The C-Ala domain brings together editing and aminoacylation functions on one tRNA.
Science, 325, 2009
5THL
DownloadVisualize
BU of 5thl by Molmil
Crystal structure of the human tyrosyl-tRNA synthetase mutant G41R
分子名称: Tyrosine--tRNA ligase, cytoplasmic
著者Blocquel, D, Sajish, M, Yang, X.L.
登録日2016-09-29
公開日2017-06-07
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Alternative stable conformation capable of protein misinteraction links tRNA synthetase to peripheral neuropathy.
Nucleic Acids Res., 45, 2017
5THH
DownloadVisualize
BU of 5thh by Molmil
Crystal structure of a human tyrosyl-tRNA synthetase mutant
分子名称: TYROSINE, Tyrosine--tRNA ligase, cytoplasmic
著者Blocquel, D, Yang, X.L.
登録日2016-09-29
公開日2017-05-17
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.959 Å)
主引用文献Alternative stable conformation capable of protein misinteraction links tRNA synthetase to peripheral neuropathy.
Nucleic Acids Res., 45, 2017
5W6M
DownloadVisualize
BU of 5w6m by Molmil
Crystal structure of the human histidyl-tRNA synthetase mutant D175E
分子名称: Histidine--tRNA ligase, cytoplasmic
著者Blocquel, D, Yang, X.L.
登録日2017-06-16
公開日2018-06-20
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.696 Å)
主引用文献CMT disease severity correlates with mutation-induced open conformation of histidyl-tRNA synthetase, not aminoacylation loss, in patient cells.
Proc.Natl.Acad.Sci.USA, 2019
5HWL
DownloadVisualize
BU of 5hwl by Molmil
Human glutathione s-transferase Mu2 complexed with BDEA, monoclinic crystal form
分子名称: GLUTATHIONE, Glutathione S-transferase Mu 2, N,N'-(butane-1,4-diyl)bis{2-[2,3-dichloro-4-(2-methylidenebutanoyl)phenoxy]acetamide}
著者Zhang, X, Wei, J, Wu, S, Zhang, H.P, Luo, M, Yang, X.L, Liao, F, Wang, D.Q.
登録日2016-01-29
公開日2017-11-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Human glutathione s-transferase Mu2 complexed with BDEA, monoclinic crystal form
To Be Published
4HVC
DownloadVisualize
BU of 4hvc by Molmil
Crystal structure of human prolyl-tRNA synthetase in complex with halofuginone and ATP analogue
分子名称: 7-bromo-6-chloro-3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one, Bifunctional glutamate/proline--tRNA ligase, MAGNESIUM ION, ...
著者Zhou, H, Sun, L, Yang, X.L, Schimmel, P.
登録日2012-11-06
公開日2013-01-02
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献ATP-directed capture of bioactive herbal-based medicine on human tRNA synthetase.
Nature, 494, 2012
1BE5
DownloadVisualize
BU of 1be5 by Molmil
STRUCTURAL STUDIES OF A STABLE PARALLEL-STRANDED DNA DUPLEX INCORPORATING ISOGUANINE:CYTOSINE AND ISOCYTOSINE:GUANINE BASE PAIRS BY NMR, MINIMIZED AVERAGE STRUCTURE
分子名称: DNA DUPLEX (TGCACGGACT)
著者Yang, X.-L, Sugiyama, H, Ikeda, S, Saito, I, Wang, A.H.-J.
登録日1998-05-19
公開日1998-08-12
最終更新日2022-02-16
実験手法SOLUTION NMR
主引用文献Structural studies of a stable parallel-stranded DNA duplex incorporating isoguanine:cytosine and isocytosine:guanine basepairs by nuclear magnetic resonance spectroscopy.
Biophys.J., 75, 1998
1B0S
DownloadVisualize
BU of 1b0s by Molmil
BINDING OF AR-1-144, A TRI-IMIDAZOLE DNA MINOR GROOVE BINDER, TO CCGG SEQUENCE ANALYZED BY NMR SPECTROSCOPY
分子名称: (2-{[4-({4-[(4-FORMYLAMINO-1-METHYL-1H-IMIDAZOLE-2-CARBONYL)-AMINO]-1-METHYL-1H-IMIDAZOLE-2-CARBONYL}-AMINO)-1-METHYL-1 H-IMIDAZOLE-2-CARBONYL]-AMINO}-ETHYL)-DIMETHYL-AMMONIUM, DNA (5'-D(*GP*AP*AP*CP*CP*GP*GP*TP*TP*C)-3')
著者Yang, X.-L, Kaenzig, C, Lee, M, Wang, A.H.-J.
登録日1998-11-12
公開日1999-08-31
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Binding of AR-1-144, a tri-imidazole DNA minor groove binder, to CCGG sequence analyzed by NMR spectroscopy.
Eur.J.Biochem., 263, 1999
1FDG
DownloadVisualize
BU of 1fdg by Molmil
BINDING OF A MACROCYCLIC BISACRIDINE AND AMETANTRONE TO CGTACG INVOLVES SIMILAR UNUSUAL INTERCALATION PLATFORMS (AMETANTRONE COMPLEX)
分子名称: 1,4-BIS-[2-(2-HYDROXY-ETHYLAMINO)-ETHYLAMINO]-ANTHRAQUINONE, COBALT (II) ION, DNA (5'-D(*CP*GP*TP*AP*CP*G)-3'), ...
著者Yang, X.-L, Robinson, H, Gao, Y.-G, Wang, A.H.-J.
登録日2000-07-20
公開日2000-08-07
最終更新日2022-09-14
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Binding of a macrocyclic bisacridine and ametantrone to CGTACG involves similar unusual intercalation platforms.
Biochemistry, 39, 2000
1FD5
DownloadVisualize
BU of 1fd5 by Molmil
BINDING OF A MACROCYCLIC BISACRIDINE AND AMETANTRONE TO CGTACG INVOLVES SIMILAR UNUSUAL INTERCALATION PLATFORMS (BISACRIDINE COMPLEX)
分子名称: COBALT (II) ION, DNA (5'-D(*CP*GP*TP*AP*CP*G)-3'), MACROCYCLIC-BIS-9-AMINO-ACRIDINE, ...
著者Yang, X.-L, Robinson, H, Gao, Y.-G, Wang, A.H.-J.
登録日2000-07-19
公開日2000-08-07
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Binding of a macrocyclic bisacridine and ametantrone to CGTACG involves similar unusual intercalation platforms.
Biochemistry, 39, 2000
7WQZ
DownloadVisualize
BU of 7wqz by Molmil
Structure of Active-mutEP
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Enteropeptidase catalytic light chain, Enteropeptidase non-catalytic heavy chain
著者Yang, X.L, Ding, Z.Y, Huang, H.J.
登録日2022-01-26
公開日2022-10-26
最終更新日2022-11-23
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Cryo-EM structures reveal the activation and substrate recognition mechanism of human enteropeptidase.
Nat Commun, 13, 2022
7WQW
DownloadVisualize
BU of 7wqw by Molmil
Structure of Active-EP
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Enteropeptidase catalytic light chain, Enteropeptidase non-catalytic heavy chain
著者Yang, X.L, Ding, Z.Y, Huang, H.J.
登録日2022-01-26
公開日2022-10-26
最終更新日2022-11-23
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Cryo-EM structures reveal the activation and substrate recognition mechanism of human enteropeptidase.
Nat Commun, 13, 2022
7WR7
DownloadVisualize
BU of 7wr7 by Molmil
Structure of Inhibited-EP
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-carbamimidamidobenzoic acid, Enteropeptidase catalytic light chain, ...
著者Yang, X.L, Ding, Z.Y, Huang, H.J.
登録日2022-01-26
公開日2022-10-26
最終更新日2022-11-23
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Cryo-EM structures reveal the activation and substrate recognition mechanism of human enteropeptidase.
Nat Commun, 13, 2022
7WQX
DownloadVisualize
BU of 7wqx by Molmil
Structure of Inactive-EP
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Enteropeptidase
著者Yang, X.L, Ding, Z.Y, Huang, H.J.
登録日2022-01-26
公開日2022-10-26
最終更新日2022-11-23
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Cryo-EM structures reveal the activation and substrate recognition mechanism of human enteropeptidase.
Nat Commun, 13, 2022
3VBB
DownloadVisualize
BU of 3vbb by Molmil
Crystal Structure of Seryl-tRNA Synthetase from Human at 2.9 angstroms
分子名称: MAGNESIUM ION, PHOSPHATE ION, Seryl-tRNA synthetase, ...
著者Xu, X.L, Yang, X.-L.
登録日2012-01-02
公開日2012-02-29
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.891 Å)
主引用文献Unique domain appended to vertebrate tRNA synthetase is essential for vascular development.
Nat Commun, 3, 2012

 

123>

218853

件を2024-04-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon