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4O0P
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BU of 4o0p by Molmil
Crystal Structure of D. radiodurans Bacteriophytochrome Photosensory Core Module in its Dark Form
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
Authors:Takala, H, Ihalainen, J.A, Westenhoff, S.
Deposit date:2013-12-14
Release date:2014-05-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Signal amplification and transduction in phytochrome photosensors
Nature, 509, 2014
4WNG
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BU of 4wng by Molmil
Crystal structure of the TPR domain of LGN in complex with Frmpd4/Preso1 at 2.1 Angstrom resolution
Descriptor: FERM and PDZ domain-containing protein 4, G-protein-signaling modulator 2
Authors:Takayanagi, H, Yuzawa, S, Sumimoto, H.
Deposit date:2014-10-11
Release date:2015-09-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Structural basis for the recognition of the scaffold protein Frmpd4/Preso1 by the TPR domain of the adaptor protein LGN
Acta Crystallogr.,Sect.F, 71, 2015
4WNE
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BU of 4wne by Molmil
Crystal structure of the TPR domain of LGN in complex with Frmpd4/Preso1 at 2.0 Angstrom resolution
Descriptor: G-protein-signaling modulator 2, Peptide from FERM and PDZ domain-containing protein 4
Authors:Takayanagi, H, Yuzawa, S, Sumimoto, H.
Deposit date:2014-10-11
Release date:2015-09-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for the recognition of the scaffold protein Frmpd4/Preso1 by the TPR domain of the adaptor protein LGN
Acta Crystallogr.,Sect.F, 71, 2015
4WND
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BU of 4wnd by Molmil
Crystal structure of the TPR domain of LGN in complex with Frmpd4/Preso1 at 1.5 Angstrom resolution
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, FERM and PDZ domain-containing protein 4, ...
Authors:Takayanagi, H, Yuzawa, S, Sumimoto, H.
Deposit date:2014-10-11
Release date:2015-09-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural basis for the recognition of the scaffold protein Frmpd4/Preso1 by the TPR domain of the adaptor protein LGN
Acta Crystallogr.,Sect.F, 71, 2015
4WNF
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BU of 4wnf by Molmil
Crystal structure of the oxidized TPR domain of LGN in complex with Frmpd4/Preso1 at 2.9 Angstrom resolution
Descriptor: FERM and PDZ domain-containing protein 4, G-protein-signaling modulator 2
Authors:Takayanagi, H, Yuzawa, S, Sumimoto, H.
Deposit date:2014-10-11
Release date:2015-09-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis for the recognition of the scaffold protein Frmpd4/Preso1 by the TPR domain of the adaptor protein LGN
Acta Crystallogr.,Sect.F, 71, 2015
1O5P
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BU of 1o5p by Molmil
Solution Structure of holo-Neocarzinostatin
Descriptor: NEOCARZINOSTATIN-CHROMOPHORE, Neocarzinostatin
Authors:Takashima, H, Ishino, T, Yoshida, T, Hasuda, K, Ohkubo, T, Kobayashi, Y.
Deposit date:2003-10-04
Release date:2003-10-14
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution NMR Structure Investigation for Releasing Mechanism of Neocarzinostatin Chromophore from the Holoprotein
J.Biol.Chem., 280, 2005
5B3T
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BU of 5b3t by Molmil
Crystal structure of apo-form biliverdin reductase from Synechocystis sp. PCC 6803
Descriptor: Biliverdin reductase, PHOSPHATE ION
Authors:Takao, H, Wada, K.
Deposit date:2016-03-12
Release date:2017-02-15
Last modified:2021-08-11
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:A substrate-bound structure of cyanobacterial biliverdin reductase identifies stacked substrates as critical for activity
Nat Commun, 8, 2017
5B3U
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BU of 5b3u by Molmil
Crystal structure of biliverdin reductase in complex with NADP+ from Synechocystis sp. PCC 6803
Descriptor: Biliverdin reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PHOSPHATE ION
Authors:Takao, H, Wada, K.
Deposit date:2016-03-13
Release date:2017-02-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.698 Å)
Cite:A substrate-bound structure of cyanobacterial biliverdin reductase identifies stacked substrates as critical for activity
Nat Commun, 8, 2017
5B3V
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BU of 5b3v by Molmil
Crystal structure of biliverdin reductase in complex with biliverdin and NADP+ from Synechocystis sp. PCC 6803
Descriptor: BILIVERDINE IX ALPHA, Biliverdin reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Takao, H, Wada, K.
Deposit date:2016-03-13
Release date:2017-02-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.594 Å)
Cite:A substrate-bound structure of cyanobacterial biliverdin reductase identifies stacked substrates as critical for activity
Nat Commun, 8, 2017
5NM3
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BU of 5nm3 by Molmil
Deinococcus radiodurans BphP PAS-GAF-PHY Y263F mutant, pre-illuminated
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
Authors:Takala, H, Westehoff, S, Ihalainen, J.A.
Deposit date:2017-04-05
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:On the (un)coupling of the chromophore, tongue interactions, and overall conformation in a bacterial phytochrome.
J. Biol. Chem., 293, 2018
1WR0
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BU of 1wr0 by Molmil
Structural characterization of the MIT domain from human Vps4b
Descriptor: SKD1 protein
Authors:Takasu, H, Jee, J.G, Ohno, A, Goda, N, Fujiwara, K, Tochio, H, Shirakawa, M, Hiroaki, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-10-07
Release date:2005-08-02
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Structural characterization of the MIT domain from human Vps4b
Biochem.Biophys.Res.Commun., 334, 2005
8DXR
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BU of 8dxr by Molmil
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 5
Descriptor: Volume-regulated anion channel subunit LRRC8C,Volume-regulated anion channel subunit LRRC8A
Authors:Takahashi, H, Yamada, T, Denton, J.S, Strange, K, Karakas, E.
Deposit date:2022-08-02
Release date:2023-03-22
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo-EM structures of a LRRC8 chimera with native functional properties reveal heptameric assembly.
Elife, 12, 2023
8DXO
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BU of 8dxo by Molmil
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 2
Descriptor: Volume-regulated anion channel subunit LRRC8C,Volume-regulated anion channel subunit LRRC8A
Authors:Takahashi, H, Yamada, T, Denton, J.S, Strange, K, Karakas, E.
Deposit date:2022-08-02
Release date:2023-03-22
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structures of a LRRC8 chimera with native functional properties reveal heptameric assembly.
Elife, 12, 2023
8DXP
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BU of 8dxp by Molmil
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 3
Descriptor: Volume-regulated anion channel subunit LRRC8C,Volume-regulated anion channel subunit LRRC8A
Authors:Takahashi, H, Yamada, T, Denton, J.S, Strange, K, Karakas, E.
Deposit date:2022-08-02
Release date:2023-03-22
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structures of a LRRC8 chimera with native functional properties reveal heptameric assembly.
Elife, 12, 2023
8DXQ
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BU of 8dxq by Molmil
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 4
Descriptor: Volume-regulated anion channel subunit LRRC8C,Volume-regulated anion channel subunit LRRC8A
Authors:Takahashi, H, Yamada, T, Denton, J.S, Strange, K, Karakas, E.
Deposit date:2022-08-02
Release date:2023-03-22
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structures of a LRRC8 chimera with native functional properties reveal heptameric assembly.
Elife, 12, 2023
8DXN
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BU of 8dxn by Molmil
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 1
Descriptor: Volume-regulated anion channel subunit LRRC8C,Volume-regulated anion channel subunit LRRC8A
Authors:Takahashi, H, Yamada, T, Denton, J.S, Strange, K, Karakas, E.
Deposit date:2022-08-02
Release date:2023-03-22
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structures of a LRRC8 chimera with native functional properties reveal heptameric assembly.
Elife, 12, 2023
4O01
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BU of 4o01 by Molmil
Crystal Structure of D. radiodurans Bacteriophytochrome Photosensory Core Module in its Illuminated Form
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
Authors:Takala, H, Ihalainen, J.A, Westenhoff, S.
Deposit date:2013-12-13
Release date:2014-05-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:Signal amplification and transduction in phytochrome photosensors
Nature, 509, 2014
5NFX
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BU of 5nfx by Molmil
Deinococcus radiodurans BphP PAS-GAF Y263F mutant
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, ACETATE ION, ...
Authors:Takala, H, Westenhoff, S, Ihalainen, J.A.
Deposit date:2017-03-16
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:On the (un)coupling of the chromophore, tongue interactions, and overall conformation in a bacterial phytochrome.
J. Biol. Chem., 293, 2018
5NWN
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BU of 5nwn by Molmil
Deinococcus radiodurans BphP PAS-GAF-PHY Y263F mutant, dark
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
Authors:Takala, H, Westehoff, S, Ihalainen, J.A.
Deposit date:2017-05-07
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:On the (un)coupling of the chromophore, tongue interactions, and overall conformation in a bacterial phytochrome.
J. Biol. Chem., 293, 2018
2V7D
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BU of 2v7d by Molmil
14-3-3 protein zeta in complex with Thr758 phosphorylated integrin beta2 peptide
Descriptor: 14-3-3 PROTEIN ZETA/DELTA, INTEGRIN BETA CHAIN, BETA 2 VARIANT
Authors:Takala, H, Ylanne, J.
Deposit date:2007-07-30
Release date:2008-06-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Beta2 Integrin Phosphorylation on Thr758 Acts as a Molecular Switch to Regulate 14-3-3 and Filamin Binding.
Blood, 112, 2008
1BG7
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BU of 1bg7 by Molmil
LOCALIZED UNFOLDING AT THE JUNCTION OF THREE FERRITIN SUBUNITS. A MECHANISM FOR IRON RELEASE?
Descriptor: CALCIUM ION, FERRITIN
Authors:Takagi, H, Shi, D, Ha, Y, Allewell, N.M, Theil, E.C.
Deposit date:1998-06-05
Release date:1999-01-13
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Localized unfolding at the junction of three ferritin subunits. A mechanism for iron release?
J.Biol.Chem., 273, 1998
1V6R
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BU of 1v6r by Molmil
Solution Structure of Endothelin-1 with its C-terminal Folding
Descriptor: Endothelin-1
Authors:Takashima, H, Mimura, N, Ohkubo, T, Yoshida, T, Tamaoki, H, Kobayashi, Y.
Deposit date:2003-12-03
Release date:2004-03-16
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Distributed Computing and NMR Constraint-Based High-Resolution Structure Determination: Applied for Bioactive Peptide Endothelin-1 To Determine C-Terminal Folding
J.Am.Chem.Soc., 126, 2004
1OI7
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BU of 1oi7 by Molmil
The Crystal Structure of Succinyl-CoA synthetase alpha subunit from Thermus Thermophilus
Descriptor: SUCCINYL-COA SYNTHETASE ALPHA CHAIN
Authors:Takahashi, H, Tokunaga, Y, Kuroishi, C, Babayeva, N, Kuramitsu, S, Yokoyama, S, Miyano, M, Tahirov, T.H.
Deposit date:2003-06-10
Release date:2003-07-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:The Crystal Structure of Succinyl-Coa Synthetase from Thermus Thermophilus
To be Published
1OD6
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BU of 1od6 by Molmil
The Crystal Structure of Phosphopantetheine adenylyltransferase from Thermus Thermophilus in complex with 4'-phosphopantetheine
Descriptor: 4'-PHOSPHOPANTETHEINE, PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE, SULFATE ION
Authors:Takahashi, H, Inagaki, E, Miyano, M, Tahirov, T.H.
Deposit date:2003-02-13
Release date:2003-03-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure and Implications for the Thermal Stability of Phosphopantetheine Adenylyltransferase from Thermus Thermophilus.
Acta Crystallogr.,Sect.D, 60, 2004
1WMI
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BU of 1wmi by Molmil
Crystal structure of archaeal RelE-RelB complex from Pyrococcus horikoshii OT3
Descriptor: hypothetical protein PHS013, hypothetical protein PHS014
Authors:Takagi, H, Kakuta, Y, Kamachi, R, Yao, M, Tanaka, I, Kimura, M.
Deposit date:2004-07-09
Release date:2005-03-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of archaeal toxin-antitoxin RelE-RelB complex with implications for toxin activity and antitoxin effects
Nat.Struct.Mol.Biol., 12, 2005

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