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3D7A
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BU of 3d7a by Molmil
Crystal structure of DUF54 family protein PH1010 from hyperthermophilic archaea Pyrococcus horikoshii OT3
Descriptor: UPF0201 protein PH1010
Authors:Shirokane, M, Miyazono, K.I, Sawano, Y, Tanokura, M.
Deposit date:2008-05-20
Release date:2008-12-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the DUF54 family protein PH1010 from hyperthermophilic archaea Pyrococcus horikoshii OT3.
Proteins, 74, 2008
6NEO
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BU of 6neo by Molmil
Crystal structure of PprA filament from Deinococcus radiodurans
Descriptor: DNA repair protein PprA
Authors:Szabla, R, Junop, M.S, Rok, M.
Deposit date:2018-12-18
Release date:2019-02-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (5.94 Å)
Cite:Crystal structure of PprA filament from Deinococcus radiodurans
To Be Published
2KJ4
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BU of 2kj4 by Molmil
Solution structure of the complex of VEK-30 and plasminogen kringle 2
Descriptor: VEK-30, plasminogen
Authors:Wang, M, Zajicek, J, Prorok, M, Castellin, F.J.
Deposit date:2009-05-21
Release date:2009-10-20
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the complex of VEK-30 and plasminogen kringle 2.
J.Struct.Biol., 169, 2010
2DPQ
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BU of 2dpq by Molmil
The crystal structures of the calcium-bound con-G and con-T(K7gamma) dimeric peptides demonstrate a novel metal-dependent helix-forming motif
Descriptor: CALCIUM ION, CHLORIDE ION, Conantokin-G
Authors:Cnudde, S.E, Prorok, M, Dai, Q, Castellino, F.J, Geiger, J.H.
Deposit date:2006-05-13
Release date:2007-04-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:The crystal structures of the calcium-bound con-G and con-T[K7gamma] dimeric peptides demonstrate a metal-dependent helix-forming motif
J.Am.Chem.Soc., 129, 2007
2DOI
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BU of 2doi by Molmil
The X-ray crystallographic structure of the angiogenesis inhibitor, angiostatin, bound to a peptide from the group A streptococcus protein PAM
Descriptor: Angiostatin, Plasminogen-binding group A streptococcal M-like protein PAM
Authors:Cnudde, S.E, Prorok, M, Castellino, F.J, Geiger, J.H.
Deposit date:2006-04-29
Release date:2006-12-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:X-ray crystallographic structure of the angiogenesis inhibitor, angiostatin, bound to a peptide from the group A streptococcal surface protein PAM
Biochemistry, 45, 2006
2DOH
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BU of 2doh by Molmil
The X-ray crystallographic structure of the angiogenesis inhibitor, angiostatin, bound a to a peptide from the group A streptococcal surface protein PAM
Descriptor: 1,4-DIETHYLENE DIOXIDE, Angiostatin, Plasminogen-binding group A streptococcal M-like protein PAM
Authors:Cnudde, S.E, Prorok, M, Castellino, F.J, Geiger, J.H.
Deposit date:2006-04-29
Release date:2006-12-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray crystallographic structure of the angiogenesis inhibitor, angiostatin, bound to a peptide from the group A streptococcal surface protein PAM
Biochemistry, 45, 2006
2GMT
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BU of 2gmt by Molmil
THREE-DIMENSIONAL STRUCTURE OF CHYMOTRYPSIN INACTIVATED WITH (2S) N-ACETYL-L-ALANYL-L-PHENYLALANYL-CHLOROETHYL KETONE: IMPLICATIONS FOR THE MECHANISM OF INACTIVATION OF SERINE PROTEASES BY CHLOROKETONES
Descriptor: (2S) N-ACETYL-L-ALANYL-ALPHAL-PHENYLALANYL-CHLOROETHYLKETONE, GAMMA-CHYMOTRYPSIN
Authors:Kreutter, K, Steinmetz, A.C.U, Liang, T.-C, Prorok, M, Abeles, R, Ringe, D.
Deposit date:1994-09-07
Release date:1994-11-01
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Three-dimensional structure of chymotrypsin inactivated with (2S)-N-acetyl-L-alanyl-L-phenylalanyl alpha-chloroethane: implications for the mechanism of inactivation of serine proteases by chloroketones.
Biochemistry, 33, 1994
2DPR
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BU of 2dpr by Molmil
The crystal structures of the calcium-bound con-G and con-T(K7Glu) dimeric peptides demonstrate a novel metal-dependent helix-forming motif
Descriptor: CALCIUM ION, Conantokin-T
Authors:Cnudde, S.E, Prorok, M, Dai, Q, Castellino, F.J, Geiger, J.H.
Deposit date:2006-05-13
Release date:2007-04-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The crystal structures of the calcium-bound con-G and con-T[K7gamma] dimeric peptides demonstrate a metal-dependent helix-forming motif
J.Am.Chem.Soc., 129, 2007
6O5L
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BU of 6o5l by Molmil
Crystal structure of PprA filament from Deinococcus peraridilitoris
Descriptor: PprA
Authors:Szabla, R, Junop, M.S, Rok, M.
Deposit date:2019-03-04
Release date:2019-03-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal structure of PprA filament from Deinococcus peraridilitoris
To Be Published
6MC8
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BU of 6mc8 by Molmil
Crystal structure of PprA dimer from Deinococcus deserti
Descriptor: DNA repair protein PprA
Authors:Szabla, R, Junop, M.S, Rok, M.
Deposit date:2018-08-30
Release date:2018-09-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of PprA from Deinococcus radiodurans
To Be Published
7R08
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BU of 7r08 by Molmil
Abortive infection DNA polymerase Abi-P2
Descriptor: Reverse transcriptase
Authors:Gapinska, M.A, Figiel, M, Czarnocki Cieciura, M, Nowotny, M, Zajko, W.
Deposit date:2022-02-01
Release date:2022-09-07
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Mechanism of protein-primed template-independent DNA synthesis by Abi polymerases.
Nucleic Acids Res., 50, 2022
7R06
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BU of 7r06 by Molmil
Abortive infection DNA polymerase AbiK from Lactococcus lactis
Descriptor: AbiK, DNA (5'-D(*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*C)-3')
Authors:Figiel, M, Nowotny, M, Gapinska, M, Czarnocki-Cieciura, M, Zajko, W.
Deposit date:2022-02-01
Release date:2022-09-07
Last modified:2022-10-05
Method:ELECTRON MICROSCOPY (2.27 Å)
Cite:Mechanism of protein-primed template-independent DNA synthesis by Abi polymerases.
Nucleic Acids Res., 50, 2022
7R07
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BU of 7r07 by Molmil
Abortive infection DNA polymerase AbiK from Lactococcus lactis
Descriptor: AbiK, DNA (5'-D(*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*C)-3'), MAGNESIUM ION
Authors:Figiel, M, Gapinska, M, Czarnocki-Cieciura, M, Zajko, W, Nowotny, M.
Deposit date:2022-02-01
Release date:2022-09-07
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Mechanism of protein-primed template-independent DNA synthesis by Abi polymerases.
Nucleic Acids Res., 50, 2022
7Z0Z
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BU of 7z0z by Molmil
Abortive infection DNA polymerase AbiK from Lactococcus lactis, Y44F variant
Descriptor: AbiK
Authors:Figiel, M, Gapinska, M, Czarnocki-Cieciura, M, Zajko, W, Nowotny, M.
Deposit date:2022-02-24
Release date:2022-09-07
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.68 Å)
Cite:Mechanism of protein-primed template-independent DNA synthesis by Abi polymerases.
Nucleic Acids Res., 50, 2022
5MP4
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BU of 5mp4 by Molmil
The structure of Pst2p from Saccharomyces cerevisiae
Descriptor: PHOSPHATE ION, Protoplast secreted protein 2
Authors:Hromic, A, Gruber, K.
Deposit date:2016-12-15
Release date:2017-05-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Structure, biochemical and kinetic properties of recombinant Pst2p from Saccharomyces cerevisiae, a FMN-dependent NAD(P)H:quinone oxidoreductase.
Biochim. Biophys. Acta, 1865, 2017
8B3K
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BU of 8b3k by Molmil
Crystal structure of human Plexin-B1 (20-535) in the unbound state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CADMIUM ION, Plexin-B1
Authors:Cowan, R, Hall, G, Carr, M.
Deposit date:2022-09-16
Release date:2023-05-03
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.685 Å)
Cite:Nanobody inhibitors of Plexin-B1 identify allostery in plexin-semaphorin interactions and signaling.
J.Biol.Chem., 299, 2023
8BB7
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BU of 8bb7 by Molmil
Crystal structure of Mouse Plexin-B1 (20-535) in complex with VHH15
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-B1, VHH15 Nanobody
Authors:Cowan, R, Hall, G, Carr, M.
Deposit date:2022-10-12
Release date:2023-05-03
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Nanobody inhibitors of Plexin-B1 identify allostery in plexin-semaphorin interactions and signaling.
J.Biol.Chem., 299, 2023
8BF4
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BU of 8bf4 by Molmil
Crystal structure of Mouse Plexin-B1 (20-535) in complex with VHH15 and VHH14
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Cowan, R, Hall, G, Carr, M.
Deposit date:2022-10-24
Release date:2023-05-03
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Nanobody inhibitors of Plexin-B1 identify allostery in plexin-semaphorin interactions and signaling.
J.Biol.Chem., 299, 2023
6KLF
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BU of 6klf by Molmil
Crystal structure of branching enzyme D434A mutant from Cyanothece sp. ATCC 51142
Descriptor: 1,4-alpha-glucan branching enzyme GlgB, GLYCEROL, MAGNESIUM ION
Authors:Suzuki, R, Suzuki, E.
Deposit date:2019-07-30
Release date:2020-08-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Cyanobacterial branching enzymes bind to alpha-glucan via surface binding sites
Arch.Biochem.Biophys., 702, 2021
7OGJ
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BU of 7ogj by Molmil
Crystal structure of human METTL1 in complex with SAH
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Nai, F, Bedi, R.K, Caflisch, A.
Deposit date:2021-05-06
Release date:2021-05-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Small-Molecule Inhibitors of the m7G-RNA Writer METTL1
Acs Bio Med Chem Au, 2023
7OTT
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BU of 7ott by Molmil
Metabolon-embedded pyruvate dehydrogenase complex E2 core at near-atomic resolution
Descriptor: Acetyltransferase component of pyruvate dehydrogenase complex
Authors:Tueting, C, Kastritis, P.L.
Deposit date:2021-06-10
Release date:2021-12-01
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.84 Å)
Cite:Cryo-EM snapshots of a native lysate provide structural insights into a metabolon-embedded transacetylase reaction.
Nat Commun, 12, 2021
7PL1
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BU of 7pl1 by Molmil
Crystal structure of human METTL1 bound to Sinefungin
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, SINEFUNGIN, ...
Authors:Nai, F, Caflisch, A.
Deposit date:2021-08-27
Release date:2021-09-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Small-Molecule Inhibitors of the m7G-RNA Writer METTL1
Acs Bio Med Chem Au, 2023
1I5K
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BU of 1i5k by Molmil
STRUCTURE AND BINDING DETERMINANTS OF THE RECOMBINANT KRINGLE-2 DOMAIN OF HUMAN PLASMINOGEN TO AN INTERNAL PEPTIDE FROM A GROUP A STREPTOCOCCAL SURFACE PROTEIN
Descriptor: M PROTEIN, PLASMINOGEN
Authors:Rios-Steiner, J.L, Schenone, M, Mochalkin, I, Tulinsky, A, Castellino, F.J.
Deposit date:2001-02-27
Release date:2001-08-01
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure and binding determinants of the recombinant kringle-2 domain of human plasminogen to an internal peptide from a group A Streptococcal surface protein.
J.Mol.Biol., 308, 2001
5M4Z
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BU of 5m4z by Molmil
Crystal structure of the complex of T.spiralis thymidylate synthase with N(4)-hydroxy-2'-deoxycytidine-5'-monophosphate, crystallized in the presence of N(5,10)-methylenetetrahydrofolate
Descriptor: GLYCEROL, Thymidylate synthase, [(2~{R},3~{S},5~{R})-5-[(4~{E})-4-hydroxyimino-2-oxidanylidene-1,3-diazinan-1-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate
Authors:Wilk, P, Maj, P, Jarmula, A, Dowiercial, A, Rode, W.
Deposit date:2016-10-19
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.179 Å)
Cite:Molecular Mechanism of Thymidylate Synthase Inhibition by N 4 -Hydroxy-dCMP in View of Spectrophotometric and Crystallographic Studies.
Int J Mol Sci, 22, 2021
6F6Z
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BU of 6f6z by Molmil
Mouse Thymidylate Synthase Cocrystallized with N(4)OHdCMP and Soaked in Methylenetetrahydrofolate
Descriptor: (2~{S})-2-[[4-[[(6~{R})-2-azanyl-4-oxidanylidene-5,6,7,8-tetrahydro-1~{H}-pteridin-6-yl]methyl-methyl-amino]phenyl]carbonylamino]pentanedioic acid, 2'-deoxy-N-hydroxycytidine 5'-(dihydrogen phosphate), Thymidylate synthase
Authors:Wilk, P, Jarmula, A, Maj, P, Rode, W.
Deposit date:2017-12-06
Release date:2019-01-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.127 Å)
Cite:Molecular Mechanism of Thymidylate Synthase Inhibition by N4-Hydroxy-dCMP in View of Spectrophotometric and Crystallographic Studies
Int J Mol Sci, 22, 2021

 

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