Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5ZKA
DownloadVisualize
BU of 5zka by Molmil
Crystal structure of N-acetylneuraminate lyase from Fusobacterium nucleatum complexed with Pyruvate
Descriptor: 1,2-ETHANEDIOL, N-acetylneuraminate lyase, TRIETHYLENE GLYCOL
Authors:Kumar, J.P, Rao, H, Nayak, V, Ramaswamy, S.
Deposit date:2018-03-23
Release date:2018-12-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal structures and kinetics of N-acetylneuraminate lyase from Fusobacterium nucleatum
Acta Crystallogr F Struct Biol Commun, 74, 2018
2KYQ
DownloadVisualize
BU of 2kyq by Molmil
1H, 15N, 13C chemical shifts and structure of CKR-brazzein
Descriptor: Defensin-like protein
Authors:Dittli, S.M, Assadi-Porter, F.M, Rao, H, Tonelli, M.
Deposit date:2010-06-07
Release date:2011-05-18
Last modified:2011-11-30
Method:SOLUTION NMR
Cite:Structural role of the terminal disulfide bond in the sweetness of brazzein.
Chem Senses, 36, 2011
2L07
DownloadVisualize
BU of 2l07 by Molmil
1H, 13C, and 15N chemical shifts and structure of brazzein-derived peptide CKR-PNG
Descriptor: Defensin-like protein
Authors:Dittli, S.M, Assadi-Porter, F.M, Rao, H, Tonelli, M.
Deposit date:2010-06-30
Release date:2011-06-22
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural role of the terminal disulfide bond in the sweetness of brazzein.
Chem Senses, 36, 2011
5ZJM
DownloadVisualize
BU of 5zjm by Molmil
Crystal structure of N-acetylneuraminate lyase from Fusobacterium nucleatum
Descriptor: 1,2-ETHANEDIOL, N-acetylneuraminate lyase
Authors:Kumar, J.P, Rao, H, Nayak, V, Subramanian, R.
Deposit date:2018-03-21
Release date:2019-01-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.323 Å)
Cite:Crystal structures and kinetics of N-acetylneuraminate lyase from Fusobacterium nucleatum
Acta Crystallogr F Struct Biol Commun, 74, 2018
4ZXO
DownloadVisualize
BU of 4zxo by Molmil
The structure of a GH26 beta-mannanase from Bacteroides ovatus, BoMan26A.
Descriptor: Glycosyl hydrolase family 26, PHOSPHATE ION, POTASSIUM ION
Authors:Bagenholm, V, Aurelius, O, Logan, D.T, Bouraoui, H, Stalbrand, H.
Deposit date:2015-05-20
Release date:2016-06-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Galactomannan Catabolism Conferred by a Polysaccharide Utilization Locus of Bacteroides ovatus: ENZYME SYNERGY AND CRYSTAL STRUCTURE OF A beta-MANNANASE.
J. Biol. Chem., 292, 2017
8KHD
DownloadVisualize
BU of 8khd by Molmil
The interface structure of Omicron RBD binding to 5817 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of 5817, Light chain of 5817, ...
Authors:Cao, L, Wang, X.
Deposit date:2023-08-21
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Identification of a broad sarbecovirus neutralizing antibody targeting a conserved epitope on the receptor-binding domain.
Cell Rep, 43, 2024
8KHC
DownloadVisualize
BU of 8khc by Molmil
SARS-CoV-2 Omicron spike in complex with 5817 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of 5817 Fab, ...
Authors:Cao, L, Wang, X.
Deposit date:2023-08-21
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Identification of a broad sarbecovirus neutralizing antibody targeting a conserved epitope on the receptor-binding domain.
Cell Rep, 43, 2024
2LY6
DownloadVisualize
BU of 2ly6 by Molmil
Refined solution structure of recombinant brazzein at low temperature
Descriptor: Defensin-like protein
Authors:Cornilescu, C.C, Cornilescu, G, Tonelli, M, Markley, J.L, Assadi-Porter, F.M.
Deposit date:2012-09-12
Release date:2012-10-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Temperature-dependent conformational change affecting Tyr11 and sweetness loops of brazzein.
Proteins, 81, 2013
2LY5
DownloadVisualize
BU of 2ly5 by Molmil
Refined solution structure of recombinant brazzein
Descriptor: Defensin-like protein
Authors:Cornilescu, C.C, Cornilescu, G, Tonelli, M, Markley, J.L, Assadi-Porter, F.M.
Deposit date:2012-09-12
Release date:2013-01-30
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Temperature-dependent conformational change affecting Tyr11 and sweetness loops of brazzein.
Proteins, 81, 2013
2SFA
DownloadVisualize
BU of 2sfa by Molmil
SERINE PROTEINASE FROM STREPTOMYCES FRADIAE ATCC 14544
Descriptor: SERINE PROTEINASE
Authors:Kitadokoro, K, Tsuzuki, H.
Deposit date:1994-04-25
Release date:1996-06-20
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Purification, characterization, primary structure, crystallization and preliminary crystallographic study of a serine proteinase from Streptomyces fradiae ATCC 14544.
Eur.J.Biochem., 220, 1994
5ZR3
DownloadVisualize
BU of 5zr3 by Molmil
Crystal structure of Hsp90-alpha N-terminal domain in complex with 4-(3-isopropyl-4-(4-(1-methyl-1H-pyrazol-4-yl)-1H-imidazol-1-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl)-3-methylbenzamide
Descriptor: 3-methyl-4-{4-[4-(1-methyl-1H-pyrazol-4-yl)-1H-imidazol-1-yl]-3-(propan-2-yl)-1H-pyrazolo[3,4-b]pyridin-1-yl}benzamide, Heat shock protein HSP 90-alpha
Authors:Uno, T, Chong, K.T, Suzuki, T.
Deposit date:2018-04-23
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Discovery of 3-Ethyl-4-(3-isopropyl-4-(4-(1-methyl-1 H-pyrazol-4-yl)-1 H-imidazol-1-yl)-1 H-pyrazolo[3,4- b]pyridin-1-yl)benzamide (TAS-116) as a Potent, Selective, and Orally Available HSP90 Inhibitor.
J. Med. Chem., 62, 2019
7CYV
DownloadVisualize
BU of 7cyv by Molmil
Crystal structure of FD20, a neutralizing single-chain variable fragment (scFv) in complex with SARS-CoV-2 Spike receptor-binding domain (RBD)
Descriptor: Spike protein S1, The heavy chain variable region of the scFv FD20,The light chain variable region of the scFv FD20, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Li, Y, Li, T, Lai, Y, Cai, H, Yao, H, Li, D.
Deposit date:2020-09-04
Release date:2021-09-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.13 Å)
Cite:Uncovering a conserved vulnerability site in SARS-CoV-2 by a human antibody.
Embo Mol Med, 13, 2021
7C8V
DownloadVisualize
BU of 7c8v by Molmil
Structure of sybody SR4 in complex with the SARS-CoV-2 S Receptor Binding domain (RBD)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Spike protein S1, ...
Authors:Li, T, Yao, H, Cai, H, Qin, W, Li, D.
Deposit date:2020-06-03
Release date:2020-06-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:A synthetic nanobody targeting RBD protects hamsters from SARS-CoV-2 infection.
Nat Commun, 12, 2021
7C8W
DownloadVisualize
BU of 7c8w by Molmil
Structure of sybody MR17 in complex with the SARS-CoV-2 S receptor-binding domain (RBD)
Descriptor: GLYCEROL, Spike protein S1, Synthetic nanobody MR17, ...
Authors:Li, T, Cai, H, Yao, H, Qin, W, Li, D.
Deposit date:2020-06-03
Release date:2020-06-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:A synthetic nanobody targeting RBD protects hamsters from SARS-CoV-2 infection.
Nat Commun, 12, 2021
7CAN
DownloadVisualize
BU of 7can by Molmil
Structure of sybody MR17-K99Y in complex with the SARS-CoV-2 S Receptor-binding domain (RBD)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Spike protein S1, ...
Authors:Li, T, Yao, H, Cai, H, Qin, W, Li, D.
Deposit date:2020-06-09
Release date:2020-06-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:A synthetic nanobody targeting RBD protects hamsters from SARS-CoV-2 infection.
Nat Commun, 12, 2021

222036

PDB entries from 2024-07-03

PDB statisticsPDBj update infoContact PDBjnumon