Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3DYL
DownloadVisualize
BU of 3dyl by Molmil
human phosphdiesterase 9 substrate complex (ES complex)
Descriptor: 3-ISOBUTYL-1-METHYLXANTHINE, CYCLIC GUANOSINE MONOPHOSPHATE, FORMIC ACID, ...
Authors:Liu, S, Mansour, M.N, Dillman, K, Perez, J, Danley, D, Menniti, F.
Deposit date:2008-07-28
Release date:2008-09-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for the catalytic mechanism of human phosphodiesterase 9.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3DY8
DownloadVisualize
BU of 3dy8 by Molmil
Human Phosphodiesterase 9 in complex with product 5'-GMP (E+P complex)
Descriptor: 3-ISOBUTYL-1-METHYLXANTHINE, FORMIC ACID, GUANOSINE-5'-MONOPHOSPHATE, ...
Authors:Liu, S, Mansour, M.N, Dillman, K, Perez, J, Danley, D, Menniti, F.
Deposit date:2008-07-25
Release date:2008-09-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural basis for the catalytic mechanism of human phosphodiesterase 9.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3DYN
DownloadVisualize
BU of 3dyn by Molmil
human phosphodiestrase 9 in complex with cGMP (Zn inhibited)
Descriptor: 3-ISOBUTYL-1-METHYLXANTHINE, CYCLIC GUANOSINE MONOPHOSPHATE, High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, ...
Authors:Liu, S, Mansour, M.N, Dillman, K, Perez, J, Danley, D, Menniti, F.
Deposit date:2008-07-28
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for the catalytic mechanism of human phosphodiesterase 9.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3DYS
DownloadVisualize
BU of 3dys by Molmil
human phosphodiestrase-5'GMP complex (EP), produced by soaking with 20mM cGMP+20 mM MnCl2+20 mM MgCl2 for 2 hours, and flash-cooled to liquid nitrogen temperature when substrate was still abudant.
Descriptor: 3-ISOBUTYL-1-METHYLXANTHINE, FORMIC ACID, GUANOSINE-5'-MONOPHOSPHATE, ...
Authors:Liu, S, Mansour, M.N, Dillman, K, Perez, J, Danley, D, Menniti, F.
Deposit date:2008-07-28
Release date:2008-09-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for the catalytic mechanism of human phosphodiesterase 9.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3DYQ
DownloadVisualize
BU of 3dyq by Molmil
human phosphodiestrase 9 (inhibited by omitting divalent cation) in complex with cGMP
Descriptor: 3-ISOBUTYL-1-METHYLXANTHINE, CYCLIC GUANOSINE MONOPHOSPHATE, High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, ...
Authors:Liu, S, Mansour, M.N, Dillman, K, Perez, J, Danley, D, Menniti, F.
Deposit date:2008-07-28
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for the catalytic mechanism of human phosphodiesterase 9.
Proc.Natl.Acad.Sci.Usa, 105, 2008
6STZ
DownloadVisualize
BU of 6stz by Molmil
Crystal structure of dimethylated RSLex - cucurbituril free form
Descriptor: Fucose-binding lectin protein, beta-D-fructopyranose
Authors:Guagnini, F, Engilberge, S, Crowley, P.B.
Deposit date:2019-09-12
Release date:2020-02-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Engineered assembly of a protein-cucurbituril biohybrid.
Chem.Commun.(Camb.), 56, 2020
5G30
DownloadVisualize
BU of 5g30 by Molmil
Crystallographic structure of mutant D60S of thioredoxin from Litopenaeus vannamei
Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, THIOREDOXIN
Authors:Campos-Acevedo, A.A, Rudino-Pinera, E.
Deposit date:2016-04-18
Release date:2017-03-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Is dimerization a common feature in thioredoxins? The case of thioredoxin from Litopenaeus vannamei.
Acta Crystallogr D Struct Biol, 73, 2017
5G31
DownloadVisualize
BU of 5g31 by Molmil
Crystallographic structure of mutant C73S of thioredoxin from Litopenaeus vannamei
Descriptor: THIOREDOXIN, ZINC ION
Authors:Campos-Acevedo, A.A, Rudino-Pinera, E.
Deposit date:2016-04-18
Release date:2017-03-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Is dimerization a common feature in thioredoxins? The case of thioredoxin from Litopenaeus vannamei.
Acta Crystallogr D Struct Biol, 73, 2017
5G2Z
DownloadVisualize
BU of 5g2z by Molmil
Crystallographic structure of mutant W31A of thioredoxin from Litopenaeus vannamei
Descriptor: THIOREDOXIN
Authors:Campos-Acevedo, A.A, Rudino-Pinera, E.
Deposit date:2016-04-18
Release date:2017-03-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Is dimerization a common feature in thioredoxins? The case of thioredoxin from Litopenaeus vannamei.
Acta Crystallogr D Struct Biol, 73, 2017
6GD7
DownloadVisualize
BU of 6gd7 by Molmil
Cytochrome c in complex with Sulfonato-calix[8]arene, H3 form with PEG
Descriptor: Cytochrome c iso-1, GLYCEROL, HEME C, ...
Authors:Rennie, M.L, Fox, G.C, Crowley, P.B.
Deposit date:2018-04-23
Release date:2018-08-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Auto-regulated Protein Assembly on a Supramolecular Scaffold.
Angew. Chem. Int. Ed. Engl., 57, 2018
8RQP
DownloadVisualize
BU of 8rqp by Molmil
In meso structure of the alginate exporter, AlgE, from Pseudomonas aeruginosa in 7.10 monoacylglycerol
Descriptor: 7.10 monoacylglycerol (R-form), 7.10 monoacylglycerol (S-form), Alginate production protein AlgE, ...
Authors:Smithers, L, Boland, C, Krawinski, P, Caffrey, M.
Deposit date:2024-01-19
Release date:2024-04-03
Last modified:2024-04-17
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:7.10 MAG. A Novel Host Monoacylglyceride for In Meso (Lipid Cubic Phase) Crystallization of Membrane Proteins.
Cryst.Growth Des., 24, 2024
8RQQ
DownloadVisualize
BU of 8rqq by Molmil
In meso structure of the adenosine A2a G protein-coupled receptor, A2aR, in 7.10 monoacylglycerol
Descriptor: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, 7.10 monoacylglycerol (R-form), 7.10 monoacylglycerol (S-form), ...
Authors:Smithers, L, Krawinski, P, Caffrey, M.
Deposit date:2024-01-19
Release date:2024-04-03
Last modified:2024-04-17
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:7.10 MAG. A Novel Host Monoacylglyceride for In Meso (Lipid Cubic Phase) Crystallization of Membrane Proteins.
Cryst.Growth Des., 24, 2024
8RQR
DownloadVisualize
BU of 8rqr by Molmil
In meso structure of apolipoprotein N-acyltransferase, Lnt, from Escherichia coli in 7.10 monoacylglycerol
Descriptor: 7.10 monoacylglycerol (S-form), Apolipoprotein N-acyltransferase, GLYCEROL
Authors:Smithers, L, Boland, C, Krawinski, P, Caffrey, M.
Deposit date:2024-01-19
Release date:2024-04-03
Last modified:2024-04-17
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:7.10 MAG. A Novel Host Monoacylglyceride for In Meso (Lipid Cubic Phase) Crystallization of Membrane Proteins.
Cryst.Growth Des., 24, 2024
3UKG
DownloadVisualize
BU of 3ukg by Molmil
Crystal structure of Rap1/DNA complex
Descriptor: CALCIUM ION, DNA-binding protein RAP1, telomeric DNA
Authors:Matot, B, Le Bihan, Y.-V, Gasparini, S, LeDu, M.H.
Deposit date:2011-11-09
Release date:2011-12-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:The orientation of the C-terminal domain of the Saccharomyces cerevisiae Rap1 protein is determined by its binding to DNA.
Nucleic Acids Res., 40, 2012
3V11
DownloadVisualize
BU of 3v11 by Molmil
Structure of the ternary initiation complex AIF2:GDPNP:methionylated initiator TRNA
Descriptor: Initiator tRNA, MAGNESIUM ION, METHIONINE, ...
Authors:Mechulam, Y, Schmitt, E.
Deposit date:2011-12-09
Release date:2012-03-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (5 Å)
Cite:Structure of the ternary initiation complex aIF2-GDPNP-methionylated initiator tRNA.
Nat.Struct.Mol.Biol., 19, 2012
4DO2
DownloadVisualize
BU of 4do2 by Molmil
Crystal Structure of the Rop protein mutant D30P/A31G at resolution 1.4 resolution.
Descriptor: Regulatory protein rop
Authors:Amprazi, M, Kapetaniou, E.G, Kokkinidis, M.
Deposit date:2012-02-09
Release date:2013-02-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:Structural plasticity of 4-alpha-helical bundles exemplified by the puzzle-like molecular assembly of the Rop protein.
Proc.Natl.Acad.Sci.USA, 111, 2014
4GPK
DownloadVisualize
BU of 4gpk by Molmil
Crystal structure of NprR in complex with its cognate peptide NprX
Descriptor: NprR, NprX peptide
Authors:Zouhir, S, Guimaraes, B, Perchat, S, Nicaise, M, Lereclus, D, Nessler, S.
Deposit date:2012-08-21
Release date:2013-07-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Peptide-binding dependent conformational changes regulate the transcriptional activity of the quorum-sensor NprR.
Nucleic Acids Res., 41, 2013
7QO8
DownloadVisualize
BU of 7qo8 by Molmil
Structure of Protease1 from Pyrococcus horikoshii in space group 19 with a hexamer in the asymmetric unit
Descriptor: Deglycase PH1704, SULFATE ION
Authors:Engilberge, S, Gabel, F, Girard, E.
Deposit date:2021-12-23
Release date:2022-03-30
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Medical contrast agents as promising tools for biomacromolecular SAXS experiments.
Acta Crystallogr D Struct Biol, 78, 2022
3F2M
DownloadVisualize
BU of 3f2m by Molmil
Urate oxidase complexed with 8-azaxanthine at 150 MPa
Descriptor: 8-AZAXANTHINE, SODIUM ION, Uricase
Authors:Colloc'h, N, Girard, E, Kahn, R, Fourme, R.
Deposit date:2008-10-30
Release date:2009-11-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-function perturbation and dissociation of tetrameric urate oxidase by high hydrostatic pressure.
Biophys.J., 98, 2010
5OC6
DownloadVisualize
BU of 5oc6 by Molmil
Crystal structure of human tRNA-dihydrouridine(20) synthase dsRBD in complex with a 22 nucleotide dsRNA
Descriptor: RNA, tRNA-dihydrouridine(20) synthase [NAD(P)+]-like
Authors:Bou-nader, C, Pecqueur, L, Hamdane, D.
Deposit date:2017-06-29
Release date:2018-12-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Molecular basis for transfer RNA recognition by the double-stranded RNA-binding domain of human dihydrouridine synthase 2.
Nucleic Acids Res., 47, 2019
5OC5
DownloadVisualize
BU of 5oc5 by Molmil
Crystal structure of human tRNA-dihydrouridine(20) synthase dsRBD K419A-K420A mutant
Descriptor: CHLORIDE ION, GLYCEROL, tRNA-dihydrouridine(20) synthase [NAD(P)+]-like
Authors:Bou-nader, C, Pecqueur, L, Hamdane, D.
Deposit date:2017-06-29
Release date:2018-12-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.893 Å)
Cite:Molecular basis for transfer RNA recognition by the double-stranded RNA-binding domain of human dihydrouridine synthase 2.
Nucleic Acids Res., 47, 2019
5OC4
DownloadVisualize
BU of 5oc4 by Molmil
Crystal structure of human tRNA-dihydrouridine(20) synthase dsRBD R361A-R362A mutant
Descriptor: CACODYLATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Bou-nader, C, Pecqueur, L, Hamdane, D.
Deposit date:2017-06-29
Release date:2018-12-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Molecular basis for transfer RNA recognition by the double-stranded RNA-binding domain of human dihydrouridine synthase 2.
Nucleic Acids Res., 47, 2019
7P2H
DownloadVisualize
BU of 7p2h by Molmil
Dimethylated fusion protein of RSL and mussel adhesion peptide (Mefp) in complex with cucurbit[7]uril, H3 sheet assembly
Descriptor: Fucose-binding lectin protein, GLYCEROL, SODIUM ION, ...
Authors:Ramberg, K, Engilberge, S, Crowley, P.B.
Deposit date:2021-07-06
Release date:2021-09-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Segregated Protein-Cucurbit[7]uril Crystalline Architectures via Modulatory Peptide Tectons.
Chemistry, 27, 2021
7P2I
DownloadVisualize
BU of 7p2i by Molmil
Dimethylated fusion protein of RSL and nucleoporin peptide (Nup) in complex with cucurbit[7]uril, F432 cage assembly
Descriptor: Fucose-binding lectin protein, cucurbit[7]uril, methyl alpha-L-fucopyranoside
Authors:Guagnini, F, Ramberg, K, Crowley, P.B.
Deposit date:2021-07-06
Release date:2021-09-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.489 Å)
Cite:Segregated Protein-Cucurbit[7]uril Crystalline Architectures via Modulatory Peptide Tectons.
Chemistry, 27, 2021
7P2J
DownloadVisualize
BU of 7p2j by Molmil
Dimethylated fusion protein of RSL and trimeric coiled coil (4dzn) in complex with cucurbit[7]uril, H3 sheet assembly
Descriptor: Fucose-binding lectin protein, SODIUM ION, beta-D-mannopyranose, ...
Authors:Ramberg, K, Engilberge, S, Crowley, P.B.
Deposit date:2021-07-06
Release date:2021-09-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Segregated Protein-Cucurbit[7]uril Crystalline Architectures via Modulatory Peptide Tectons.
Chemistry, 27, 2021

220113

數據於2024-05-22公開中

PDB statisticsPDBj update infoContact PDBjnumon