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5YTU
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BU of 5ytu by Molmil
Structure of human SOD1 complexed with isoproteranol in C2221 space group
分子名称: Dihydrogen tetrasulfide, GLYCEROL, ISOPRENALINE, ...
著者Manjula, R, Padmanabhan, B.
登録日2017-11-20
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Assessment of ligand binding at a site relevant to SOD1 oxidation and aggregation
FEBS Lett., 592, 2018
5YUL
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BU of 5yul by Molmil
Native Structure of hSOD1 in P6322 space group
分子名称: Dihydrogen tetrasulfide, GLYCEROL, Superoxide dismutase [Cu-Zn], ...
著者Manjula, R, Padmanabhan, B.
登録日2017-11-22
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Assessment of ligand binding at a site relevant to SOD1 oxidation and aggregation
FEBS Lett., 592, 2018
6A9O
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BU of 6a9o by Molmil
Rational discovery of a SOD1 tryptophan oxidation inhibitor with therapeutic potential for amyotrophic lateral sclerosis
分子名称: 2'-[(6-oxo-5,6-dihydrophenanthridin-3-yl)carbamoyl][1,1'-biphenyl]-2-carboxylic acid, DIMETHYL SULFOXIDE, Dihydrogen tetrasulfide, ...
著者Manjula, R, Padmanabhan, B.
登録日2018-07-14
公開日2019-07-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Rational discovery of a SOD1 tryptophan oxidation inhibitor with therapeutic potential for amyotrophic lateral sclerosis.
J.Biomol.Struct.Dyn., 37, 2019
1WG0
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BU of 1wg0 by Molmil
Structural comparison of Nas6p protein structures in two different crystal forms
分子名称: Probable 26S proteasome regulatory subunit p28
著者Nakamura, Y, Umehara, T, Tanaka, A, Horikoshi, M, Yokoyama, S, Padmanabhan, B, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-27
公開日2005-06-07
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.53 Å)
主引用文献Structural comparison of Nas6p protein structures in two different crystal forms
To be Published
1X0J
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BU of 1x0j by Molmil
Crystal structure analysis of the N-terminal bromodomain of human Brd2
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Bromodomain-containing protein 2
著者Nakamura, Y, Umehara, T, Shirouzu, M, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-03-23
公開日2006-06-27
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for acetylated histone H4 recognition by the human Brd2 bromodomain
To be Published
2YXX
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BU of 2yxx by Molmil
Crystal structure analysis of Diaminopimelate decarboxylate (lysA)
分子名称: Diaminopimelate decarboxylase, PYRIDOXAL-5'-PHOSPHATE
著者Nakamura, Y, Bessho, Y, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-27
公開日2007-10-30
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure analysis of Diaminopimelate decarboxylate (lysA)
To be Published
2YZ2
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BU of 2yz2 by Molmil
Crystal structure of the ABC transporter in the cobalt transport system
分子名称: Putative ABC transporter ATP-binding protein TM_0222
著者Ethayathullah, A.S, Bessho, Y, Padmanabhan, B, Singh, T.P, Kaur, P, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-02
公開日2007-11-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of the ABC transporter in the cobalt transport system
To be Published
2YYR
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BU of 2yyr by Molmil
Structural analysis of PHD domain of Pygopus complexed with trimethylated histone H3 peptide
分子名称: H3K4Me3 peptide, Pygopus homolog 1, ZINC ION
著者Nakamura, Y, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-01
公開日2008-05-06
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural analysis of PHD domain of Pygopus complexed with trimethylated histone H3 peptide
To be Published
2YYY
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BU of 2yyy by Molmil
Crystal structure of Glyceraldehyde-3-phosphate dehydrogenase
分子名称: Glyceraldehyde-3-phosphate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Malay, A.D, Bessho, Y, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-02
公開日2007-11-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure of glyceraldehyde-3-phosphate dehydrogenase from the archaeal hyperthermophile Methanocaldococcus jannaschii.
Acta Crystallogr.,Sect.F, 65, 2009
2YYZ
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BU of 2yyz by Molmil
Crystal structure of Sugar ABC transporter, ATP-binding protein
分子名称: DI(HYDROXYETHYL)ETHER, SULFATE ION, Sugar ABC transporter, ...
著者Ethayathullah, A.S, Bessho, Y, Padmanabhan, B, Singh, T.P, Kaur, P, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-02
公開日2007-11-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献Crystal structure of Sugar ABC transporter, ATP-binding protein
To be Published
2Z34
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BU of 2z34 by Molmil
Crystal structure of SpCia1/Asf1 complex with Hip1
分子名称: Histone chaperone cia1, Protein hir1
著者Malay, A.D, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-31
公開日2008-03-11
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structures of fission yeast histone chaperone Asf1 complexed with the Hip1 B-domain or the Cac2 C terminus
J.Biol.Chem., 283, 2008
2Z3F
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BU of 2z3f by Molmil
Crystal structure of spCia1/Asf1 complexed with Cac2 peptide
分子名称: Histone chaperone cia1, SPAC26H5.03 protein
著者Malay, A.D, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-06-04
公開日2008-03-11
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal Structures of Fission Yeast Histone Chaperone Asf1 Complexed with the Hip1 B-domain or the Cac2 C Terminus
J.Biol.Chem., 283, 2008
3AQA
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BU of 3aqa by Molmil
Crystal structure of the human BRD2 BD1 bromodomain in complex with a BRD2-interactive compound, BIC1
分子名称: 1-[2-(1H-benzimidazol-2-ylsulfanyl)ethyl]-3-methyl-1,3-dihydro-2H-benzimidazole-2-thione, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Bromodomain-containing protein 2
著者Umehara, T, Nakamura, Y, Terada, T, Shirouzu, M, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2010-10-27
公開日2011-05-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Real-Time Imaging of Histone H4K12-Specific Acetylation Determines the Modes of Action of Histone Deacetylase and Bromodomain Inhibitors
Chem.Biol., 18, 2011
2JNS
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BU of 2jns by Molmil
Solution structure of the Bromodomain-containing protein 4 ET domain
分子名称: Bromodomain-containing protein 4
著者Lin, Y.J, Padmanabhan, B, Yokoyama, S, Guntert, P, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-02-01
公開日2008-02-05
最終更新日2024-05-08
実験手法SOLUTION NMR
主引用文献Solution structure of the Bromodomain-containing protein 4 ET domain
To be Published
2DVW
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BU of 2dvw by Molmil
Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome
分子名称: 26S protease regulatory subunit 6B, 26S proteasome non-ATPase regulatory subunit 10
著者Yokoyama, S, Padmanabhan, B, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-01
公開日2007-03-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome
Structure, 15, 2007
2DVS
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BU of 2dvs by Molmil
Crystal structure analysis of the N-terminal bromodomain of human BRD2 complexed with acetylated histone H4 peptide
分子名称: bromodomain-containing protein 2, histone H4
著者Nakamura, Y, Umehara, T, Shirouzu, M, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-01
公開日2007-08-07
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Structural Basis for Acetylated Histone H4 Recognition by the Human BRD2 Bromodomain.
J.Biol.Chem., 285, 2010
2DVQ
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BU of 2dvq by Molmil
Crystal structure analysis of the N-terminal bromodomain of human BRD2 complexed with acetylated histone H4 peptide
分子名称: Bromodomain-containing protein 2, histone H4
著者Nakamura, Y, Umehara, T, Shirouzu, M, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-01
公開日2007-08-07
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Structural Basis for Acetylated Histone H4 Recognition by the Human BRD2 Bromodomain.
J.Biol.Chem., 285, 2010
2DVR
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BU of 2dvr by Molmil
Crystal structure analysis of the N-terminal bromodomain of human BRD2 complexed with acetylated histone H4 peptide
分子名称: bromodomain-containing protein 2, histone H4
著者Nakamura, Y, Umehara, T, Shirouzu, M, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-01
公開日2007-08-07
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural Basis for Acetylated Histone H4 Recognition by the Human BRD2 Bromodomain.
J.Biol.Chem., 285, 2010
2DZO
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BU of 2dzo by Molmil
Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3
分子名称: 26S protease regulatory subunit 6B homolog, Probable 26S proteasome regulatory subunit p28
著者Nakamura, Y, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-09-29
公開日2007-10-16
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3
To be Published
2DZN
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BU of 2dzn by Molmil
Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3
分子名称: 26S protease regulatory subunit 6B homolog, Probable 26S proteasome regulatory subunit p28
著者Yokoyama, S, Padmanabhan, B, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-09-29
公開日2007-07-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for the recognition between the regulatory particles Nas6 and Rpt3 of the yeast 26S proteasome
Biochem.Biophys.Res.Commun., 359, 2007
8KDX
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BU of 8kdx by Molmil
Tau-S214 Phosphorylation Inhibits Fyn Kinase Interaction and Increases the Decay Time of NMDAR-mediated Current
分子名称: Microtubule-associated protein tau, Tyrosine-protein kinase Fyn
著者Padavattan, S, Jos, S.
登録日2023-08-10
公開日2024-02-28
実験手法X-RAY DIFFRACTION (1.01 Å)
主引用文献Tau-S214 Phosphorylation Inhibits Fyn Kinase Interaction and Increases the Decay Time of NMDAR-mediated Current.
J.Mol.Biol., 436, 2024
1VEA
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BU of 1vea by Molmil
Crystal Structure of HutP, an RNA binding antitermination protein
分子名称: Hut operon positive regulatory protein, N-(2-NAPHTHYL)HISTIDINAMIDE
著者Kumarevel, T.S, Fujimoto, Z, Karthe, P, Oda, M, Mizuno, H, Kumar, P.K.R.
登録日2004-03-29
公開日2004-07-20
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structure of Activated HutP; An RNA Binding Protein that Regulates Transcription of the hut Operon in Bacillus subtilis
Structure, 12, 2004
2M62
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BU of 2m62 by Molmil
Solution Structure of a Chi/Lambda Conotoxin fron Conus araneosus
分子名称: Chi-conotoxin-like Ar1248
著者Sarma, S.P, Ganesan, S, Gowd K, H, Padmanabhan, B.
登録日2013-03-19
公開日2014-04-16
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution Structure of Ar1248, a Chi/Lambda conotoxin from Conus araneosus
To Be Published
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