3AEV
| Crystal structure of a/eIF2alpha-aDim2p-rRNA complex from Pyrococcus horikoshii OT3 | Descriptor: | Putative uncharacterized protein PH1566, RNA (5'-R(*GP*GP*AP*UP*CP*AP*CP*CP*UP*CP*C)-3'), Translation initiation factor 2 subunit alpha | Authors: | Tanokura, M, Jia, M.Z, Nagata, K. | Deposit date: | 2010-02-10 | Release date: | 2010-04-21 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | An archaeal Dim2-like protein, aDim2p, forms a ternary complex with a/eIF2 alpha and the 3' end fragment of 16S rRNA J.Mol.Biol., 398, 2010
|
|
2YYS
| Crystal structure of the proline iminopeptidase-related protein TTHA1809 from Thermus thermophilus HB8 | Descriptor: | GLYCEROL, Proline iminopeptidase-related protein | Authors: | Okai, M, Miyauchi, Y, Ebihara, A, Lee, W.C, Nagata, K, Tanokura, M. | Deposit date: | 2007-05-01 | Release date: | 2008-02-26 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal structure of the proline iminopeptidase-related protein TTHA1809 from Thermus thermophilus HB8 Proteins, 70, 2008
|
|
2ZNL
| Crystal structure of PA-PB1 complex form influenza virus RNA polymerase | Descriptor: | Polymerase acidic protein, RNA-directed RNA polymerase catalytic subunit | Authors: | Obayashi, E, Yoshida, H, Kawai, F, Shibayama, N, Kawaguchi, A, Nagata, K, Tame, J.R.H, Park, S.-Y. | Deposit date: | 2008-04-28 | Release date: | 2008-09-02 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | The structural basis for an essential subunit interaction in influenza virus RNA polymerase Nature, 454, 2008
|
|
3EOQ
| The crystal structure of putative zinc protease beta-subunit from Thermus thermophilus HB8 | Descriptor: | Putative zinc protease | Authors: | Ohtsuka, J, Ichihara, Y, Ebihara, A, Yokoyama, S, Kuramitsu, S, Nagata, K, Tanokura, M. | Deposit date: | 2008-09-29 | Release date: | 2009-03-17 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.29 Å) | Cite: | Crystal structure of TTHA1264, a putative M16-family zinc peptidase from Thermus thermophilus HB8 that is homologous to the beta subunit of mitochondrial processing peptidase. Proteins, 2009
|
|
2ZWR
| Crystal structure of TTHA1623 from thermus thermophilus HB8 | Descriptor: | Metallo-beta-lactamase superfamily protein, ZINC ION | Authors: | Yamamura, A, Okada, A, Kameda, Y, Ohtsuka, J, Nakagawa, N, Ebihara, A, Yokoyama, S, Kuramitsu, S, Nagata, K, Tanokura, M. | Deposit date: | 2008-12-17 | Release date: | 2009-10-06 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structure of TTHA1623, a novel metallo-beta-lactamase superfamily protein from Thermus thermophilus HB8 Acta Crystallogr.,Sect.F, 65, 2009
|
|
2ZZI
| Crystal structure of TTHA1623 in a di-iron-bound form | Descriptor: | ACETATE ION, FE (III) ION, Metallo-beta-lactamase superfamily protein | Authors: | Yamamura, A, Okada, A, Kameda, Y, Ohtsuka, J, Nakagawa, N, Ebihara, A, Yokoyama, S, Kuramitsu, S, Nagata, K, Tanokura, M. | Deposit date: | 2009-02-16 | Release date: | 2010-01-05 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Structure of TTHA1623, a novel metallo-beta-lactamase superfamily protein from Thermus thermophilus HB8 Acta Crystallogr.,Sect.F, 65, 2009
|
|
2DVY
| Crystal structure of restriction endonucleases PabI | Descriptor: | Restriction endonuclease PabI | Authors: | Miyazono, K, Watanabe, M, Kamo, M, Sawasaki, T, Nagata, K, Endo, Y, Tanokura, M, Kobayashi, I. | Deposit date: | 2006-08-01 | Release date: | 2007-05-08 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Novel protein fold discovered in the PabI family of restriction enzymes Nucleic Acids Res., 35, 2007
|
|
1J0T
| The solution structure of molt-inhibiting hormone from the kuruma prawn | Descriptor: | MOLT-INHIBITING HORMONE | Authors: | Katayama, H, Nagata, K, Ohira, T, Yumoto, F, Tanokura, M, Nagasawa, H. | Deposit date: | 2002-11-22 | Release date: | 2002-12-11 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | The solution structure of molt-inhibiting hormone from the Kuruma prawn Marsupenaeus japonicus J.Biol.Chem., 278, 2003
|
|
2EGD
| Crystal structure of human S100A13 in the Ca2+-bound state | Descriptor: | CALCIUM ION, Protein S100-A13 | Authors: | Imai, F.L, Nagata, K, Yonezawa, N, Nakano, M, Tanokura, M. | Deposit date: | 2007-02-28 | Release date: | 2008-03-11 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of human S100A13 in the Ca2+-bound state Acta Crystallogr.,Sect.F, 64, 2008
|
|
2EB1
| Crystal Structure of the C-Terminal RNase III Domain of Human Dicer | Descriptor: | Endoribonuclease Dicer, MAGNESIUM ION | Authors: | Takeshita, D, Zenno, S, Lee, W.C, Nagata, K, Saigo, K, Tanokura, M. | Deposit date: | 2007-02-05 | Release date: | 2007-11-06 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Homodimeric Structure and Double-stranded RNA Cleavage Activity of the C-terminal RNase III Domain of Human Dicer J.Mol.Biol., 374, 2007
|
|
3VXG
| Crystal structure of conjugated polyketone reductase C2 from Candida Parapsilosis | Descriptor: | Conjugated polyketone reductase C2 | Authors: | Qin, H.-M, Yamamura, A, Miyakawa, T, Maruoka, S, Ohtsuka, J, Nagata, K, Kataoka, M, Shimizu, S, Tanokura, M. | Deposit date: | 2012-09-13 | Release date: | 2013-08-07 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Structure of conjugated polyketone reductase from Candida parapsilosis IFO 0708 reveals conformational changes for substrate recognition upon NADPH binding Appl.Microbiol.Biotechnol., 98, 2014
|
|
3WG6
| Crystal structure of conjugated polyketone reductase C1 from Candida parapsilosis complexed with NADPH | Descriptor: | Conjugated polyketone reductase C1, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | Authors: | Qin, H.-M, Yamamura, A, Miyakawa, T, Maruoka, S, Ohtsuka, J, Nagata, K, Kataoka, M, Shimizu, S, Tanokura, M. | Deposit date: | 2013-07-28 | Release date: | 2013-08-21 | Last modified: | 2022-08-24 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal structure of conjugated polyketone reductase (CPR-C1) from Candida parapsilosis IFO 0708 complexed with NADPH. Proteins, 81, 2013
|
|
3WAF
| X-ray structure of apo-TtFbpA, a ferric ion-binding protein from thermus thermophilus HB8 | Descriptor: | ISOPROPYL ALCOHOL, Iron ABC transporter, periplasmic iron-binding protein | Authors: | Wang, S, Ogata, M, Horita, S, Ohtsuka, J, Nagata, K, Tanokura, M. | Deposit date: | 2013-05-02 | Release date: | 2014-05-21 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | A novel mode of ferric ion coordination by the periplasmic ferric ion-binding subunit FbpA of an ABC-type iron transporter from Thermus thermophilus HB8. Acta Crystallogr.,Sect.D, 70, 2014
|
|
3WAE
| X-ray structure of Fe(III)-bicarbonates-ttfbpa, a ferric ion-binding protein from thermus thermophilus HB8 | Descriptor: | BICARBONATE ION, FE (III) ION, IRON ABC TRANSPORTER, ... | Authors: | Wang, S, Ogata, M, Horita, S, Ohtsuka, J, Nagata, K, Tanokura, M. | Deposit date: | 2013-05-02 | Release date: | 2014-05-21 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | A novel mode of ferric ion coordination by the periplasmic ferric ion-binding subunit FbpA of an ABC-type iron transporter from Thermus thermophilus HB8. Acta Crystallogr.,Sect.D, 70, 2014
|
|
3WLX
| Crystal structure of low-specificity L-threonine aldolase from Escherichia coli | Descriptor: | Low specificity L-threonine aldolase, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] | Authors: | Qin, H.-M, Imai, F.L, Miyakawa, T, Kataoka, M, Okai, M, Hou, F, Ohtsuka, J, Nagata, K, Shimizu, S, Tanokura, M. | Deposit date: | 2013-11-15 | Release date: | 2014-12-17 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.51 Å) | Cite: | Structure analysis of L-threonine aldolase from Escherichia coli unravels the low-specificity and thermostability To be Published
|
|
2D37
| The Crystal Structure of Flavin Reductase HpaC complexed with NAD+ | Descriptor: | FLAVIN MONONUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, hypothetical NADH-dependent FMN oxidoreductase | Authors: | Okai, M, Kudo, N, Lee, W.C, Kamo, M, Nagata, K, Tanokura, M. | Deposit date: | 2005-09-26 | Release date: | 2006-05-30 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structures of the short-chain flavin reductase HpaC from Sulfolobus tokodaii strain 7 in its three states: NAD(P)(+)(-)free, NAD(+)(-)bound, and NADP(+)(-)bound Biochemistry, 45, 2006
|
|
2D7J
| Crystal Structure Analysis of Glutamine Amidotransferase from Pyrococcus horikoshii OT3 | Descriptor: | GMP synthase [glutamine-hydrolyzing] subunit A | Authors: | Maruoka, S, Lee, W.C, Kamo, M, Kudo, N, Nagata, K, Tanokura, M. | Deposit date: | 2005-11-21 | Release date: | 2006-11-21 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.89 Å) | Cite: | Crystal structure of glutamine amidotransferase from Pyrococcus horikoshii OT3 PROC.JPN.ACAD.,SER.B, 81, 2005
|
|
2D36
| The Crystal Structure of Flavin Reductase HpaC | Descriptor: | FLAVIN MONONUCLEOTIDE, hypothetical NADH-dependent FMN oxidoreductase | Authors: | Okai, M, Kudo, N, Lee, W.C, Kamo, M, Nagata, K, Tanokura, M. | Deposit date: | 2005-09-26 | Release date: | 2006-05-30 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal structures of the short-chain flavin reductase HpaC from Sulfolobus tokodaii strain 7 in its three states: NAD(P)(+)(-)free, NAD(+)(-)bound, and NADP(+)(-)bound Biochemistry, 45, 2006
|
|
2D38
| The Crystal Structure of Flavin Reductase HpaC complexed with NADP+ | Descriptor: | FLAVIN MONONUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, hypothetical NADH-dependent FMN oxidoreductase | Authors: | Okai, M, Kudo, N, Lee, W.C, Kamo, M, Nagata, K, Tanokura, M. | Deposit date: | 2005-09-26 | Release date: | 2006-05-30 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.05 Å) | Cite: | Crystal structures of the short-chain flavin reductase HpaC from Sulfolobus tokodaii strain 7 in its three states: NAD(P)(+)(-)free, NAD(+)(-)bound, and NADP(+)(-)bound Biochemistry, 45, 2006
|
|
8GS6
| Structure of the SARS-CoV-2 BA.2.75 spike glycoprotein (closed state 1) | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein | Authors: | Anraku, Y, Tabata-Sasaki, K, Kita, S, Fukuhara, H, Maenaka, K, Hashiguchi, T. | Deposit date: | 2022-09-05 | Release date: | 2022-10-26 | Last modified: | 2023-03-29 | Method: | ELECTRON MICROSCOPY (2.86 Å) | Cite: | Virological characteristics of the SARS-CoV-2 Omicron BA.2.75 variant. Cell Host Microbe, 30, 2022
|
|
4O0L
| |
5AYK
| Crystal structure of ERdj5 form I | Descriptor: | 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, CHLORIDE ION, DnaJ homolog subfamily C member 10 | Authors: | Watanabe, S, Maegawa, K, Inaba, K. | Deposit date: | 2015-08-22 | Release date: | 2017-02-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | Highly dynamic nature of ERdj5 is essential for enhancement of the ER associated degradation To Be Published
|
|
5AYL
| Crystal structure of ERdj5 form II | Descriptor: | 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, DnaJ homolog subfamily C member 10 | Authors: | Watanabe, S, Maegawa, K, Inaba, K. | Deposit date: | 2015-08-22 | Release date: | 2017-02-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Highly dynamic nature of ERdj5 is essential for enhancement of the ER associated degradation To Be Published
|
|
5ZTF
| Structure of Ca2+ ATPase | Descriptor: | CALCIUM ION, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ... | Authors: | Inoue, M, Watanabe, S, Inaba, K. | Deposit date: | 2018-05-03 | Release date: | 2019-05-22 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (3.45 Å) | Cite: | Structural Basis of Sarco/Endoplasmic Reticulum Ca2+-ATPase 2b Regulation via Transmembrane Helix Interplay. Cell Rep, 27, 2019
|
|
2ZFU
| Structure of the methyltransferase-like domain of nucleomethylin | Descriptor: | Cerebral protein 1, S-ADENOSYL-L-HOMOCYSTEINE | Authors: | Minami, H, Hashimoto, H, Murayama, A, Yanagisawa, J, Sato, M, Shimizu, T. | Deposit date: | 2008-01-14 | Release date: | 2008-12-02 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Epigenetic control of rDNA loci in response to intracellular energy status Cell(Cambridge,Mass.), 133, 2008
|
|