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1YNQ
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BU of 1ynq by Molmil
aldo-keto reductase AKR11C1 from Bacillus halodurans (holo form)
分子名称: GLYCEROL, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, SODIUM ION, ...
著者Marquardt, T, Kostrewa, D, Winkler, F.K, Li, X.D.
登録日2005-01-25
公開日2005-12-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献High-resolution Crystal Structure of AKR11C1 from Bacillus halodurans: An NADPH-dependent 4-Hydroxy-2,3-trans-nonenal Reductase
J.Mol.Biol., 354, 2005
1YNP
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BU of 1ynp by Molmil
aldo-keto reductase AKR11C1 from Bacillus halodurans (apo form)
分子名称: GLYCEROL, SODIUM ION, SULFATE ION, ...
著者Marquardt, T, Kostrewa, D, Winkler, F.K, Li, X.D.
登録日2005-01-25
公開日2005-12-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献High-resolution Crystal Structure of AKR11C1 from Bacillus halodurans: An NADPH-dependent 4-Hydroxy-2,3-trans-nonenal Reductase
J.Mol.Biol., 354, 2005
4BGN
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BU of 4bgn by Molmil
cryo-EM structure of the NavCt voltage-gated sodium channel
分子名称: VOLTAGE-GATED SODIUM CHANNEL
著者Tsai, C.J, Tani, K, Irie, K, Hiroaki, Y, Shimomura, T, Mcmillan, D.G, Cook, G.M, Schertler, G, Fujiyoshi, Y, Li, X.D.
登録日2013-03-28
公開日2013-07-10
最終更新日2023-12-20
実験手法ELECTRON CRYSTALLOGRAPHY (9 Å)
主引用文献Two Alternative Conformations of a Voltage-Gated Sodium Channel.
J.Mol.Biol., 425, 2013
3MHY
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BU of 3mhy by Molmil
A New PII Protein Structure
分子名称: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-OXOGLUTARIC ACID, ...
著者Winkler, F.K, Truan, D, Li, X.D.
登録日2010-04-09
公開日2010-06-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献A new P(II) protein structure identifies the 2-oxoglutarate binding site.
J.Mol.Biol., 400, 2010
8GPN
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BU of 8gpn by Molmil
Human menin in complex with H3K79Me2 nucleosome
分子名称: DNA (177-MER), Histone H2A type 1, Histone H2B 1.1, ...
著者Lin, J, Yu, D, Lam, W.H, Dang, S, Zhai, Y, Li, X.D.
登録日2022-08-26
公開日2023-02-15
最終更新日2023-03-01
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Menin "reads" H3K79me2 mark in a nucleosomal context.
Science, 379, 2023
6Y86
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BU of 6y86 by Molmil
Active YidC insertase crystal structure with the first transmembrane domain resolved
分子名称: Membrane protein insertase YidC
著者Li, X.D, Nass, K.
登録日2020-03-03
公開日2021-09-22
最終更新日2022-04-06
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献The role of the N-terminal amphipathic helix in bacterial YidC: Insights from functional studies, the crystal structure and molecular dynamics simulations.
Biochim Biophys Acta Biomembr, 1864, 2022
5YS6
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BU of 5ys6 by Molmil
Structure of the ectodomain of pseudorabies virus glycoproten B
分子名称: PRV glycoproten B
著者Hu, X.L, Yang, F.L.
登録日2017-11-13
公開日2017-12-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Two classes of protective antibodies against pseudorabies virus variant glycoprotein B: implications for vaccine design
To Be Published
8XGC
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BU of 8xgc by Molmil
Structure of yeast replisome associated with FACT and histone hexamer, Composite map
分子名称: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, Chromosome segregation in meiosis protein 3, ...
著者Li, N, Gao, Y, Yu, D, Gao, N, Zhai, Y.
登録日2023-12-15
公開日2024-02-14
最終更新日2024-04-10
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Parental histone transfer caught at the replication fork.
Nature, 627, 2024
2NX9
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BU of 2nx9 by Molmil
Crystal structure of the carboxyltransferase domain of the oxaloacetate decarboxylase Na+ pump from Vibrio cholerae
分子名称: Oxaloacetate decarboxylase 2, subunit alpha, ZINC ION
著者Studer, R, Dimroth, P.
登録日2006-11-17
公開日2006-12-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of the Carboxyltransferase Domain of the Oxaloacetate Decarboxylase Na(+) Pump from Vibrio cholerae.
J.Mol.Biol., 367, 2007
6L5Z
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BU of 6l5z by Molmil
Crystal strucutre of AF9 YEATS domain in complex with a cyclopeptide inhibitor
分子名称: Protein AF-9, SC0-ALO-ALA-SC3-SC4-NH2
著者Li, Y, Chen, G, Li, H.
登録日2019-10-25
公開日2020-10-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Selective Targeting of AF9 YEATS Domain by Cyclopeptide Inhibitors with Preorganized Conformation.
J.Am.Chem.Soc., 142, 2020
8W7M
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BU of 8w7m by Molmil
Yeast replisome in state V
分子名称: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, DNA (71-mer), ...
著者Dang, S, Zhai, Y, Feng, J, Yu, D, Xu, Z.
登録日2023-08-30
公開日2023-12-06
実験手法ELECTRON MICROSCOPY (4.12 Å)
主引用文献Synergism between CMG helicase and leading strand DNA polymerase at replication fork.
Nat Commun, 14, 2023
8W7S
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BU of 8w7s by Molmil
Yeast replisome in state IV
分子名称: Cell division control protein 45, DNA (71-mer), DNA polymerase alpha-binding protein, ...
著者Dang, S, Zhai, Y, Feng, J, Yu, D.
登録日2023-08-31
公開日2023-12-20
実験手法ELECTRON MICROSCOPY (7.39 Å)
主引用文献Synergism between CMG helicase and leading strand DNA polymerase at replication fork.
Nat Commun, 14, 2023
6ISO
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BU of 6iso by Molmil
Human SIRT3 Recognizing H3K4cr
分子名称: (2E)-BUT-2-ENAL, ARG-THR-LYS-GLN-THR-ALA-ARG, GLYCEROL, ...
著者Wang, Y, Hao, Q.
登録日2018-11-17
公開日2019-01-23
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Identification of 'erasers' for lysine crotonylated histone marks using a chemical proteomics approach.
Elife, 3, 2014
3RWL
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BU of 3rwl by Molmil
Structure of P450pyr hydroxylase
分子名称: Cytochrome P450 alkane hydroxylase 1 CYP153A7, PROTOPORPHYRIN IX CONTAINING FE
著者Pompidor, G.
登録日2011-05-09
公開日2012-04-18
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Evolving P450pyr hydroxylase for highly enantioselective hydroxylation at non-activated carbon atom.
Chem.Commun.(Camb.), 48, 2012
3B9W
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BU of 3b9w by Molmil
The 1.3 A resolution structure of Nitrosomonas europaea Rh50 and mechanistic implications for NH3 transport by Rhesus family proteins
分子名称: Ammonium transporter family, GLYCEROL, octyl beta-D-glucopyranoside
著者Lupo, D, Winkler, F.K.
登録日2007-11-07
公開日2007-11-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献The 1.3-A resolution structure of Nitrosomonas europaea Rh50 and mechanistic implications for NH3 transport by Rhesus family proteins.
Proc.Natl.Acad.Sci.Usa, 104, 2007
4PIR
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BU of 4pir by Molmil
X-ray structure of the mouse serotonin 5-HT3 receptor
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 5-hydroxytryptamine receptor 3A, ...
著者Hassaine, G, Deluz, C, Grasso, L, Wyss, R, Tol, M.B, Hovius, R, Graff, A, Stahlberg, H, Tomizaki, T, Desmyter, A, Moreau, C, Li, X.-D, Poitevin, F, Vogel, H, Nury, H.
登録日2014-05-09
公開日2014-08-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献X-ray structure of the mouse serotonin 5-HT3 receptor.
Nature, 512, 2014
8KG9
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BU of 8kg9 by Molmil
Yeast replisome in state III
分子名称: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, DNA (61-mer), ...
著者Dang, S, Zhai, Y, Feng, J, Yu, D, Xu, Z.
登録日2023-08-17
公開日2023-12-06
実験手法ELECTRON MICROSCOPY (4.52 Å)
主引用文献Synergism between CMG helicase and leading strand DNA polymerase at replication fork.
Nat Commun, 14, 2023
8KG8
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BU of 8kg8 by Molmil
Yeast replisome in state II
分子名称: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, DNA (61-mer), ...
著者Dang, S, Zhai, Y, Feng, J, Yu, D, Xu, Z.
登録日2023-08-17
公開日2023-12-06
実験手法ELECTRON MICROSCOPY (4.23 Å)
主引用文献Synergism between CMG helicase and leading strand DNA polymerase at replication fork.
Nat Commun, 14, 2023
8KG6
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BU of 8kg6 by Molmil
Yeast replisome in state I
分子名称: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, Chromosome segregation in meiosis protein 3, ...
著者Dang, S, Zhai, Y, Feng, J, Yu, D, Xu, Z.
登録日2023-08-17
公開日2023-12-06
実験手法ELECTRON MICROSCOPY (3.07 Å)
主引用文献Synergism between CMG helicase and leading strand DNA polymerase at replication fork.
Nat Commun, 14, 2023
4CO3
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BU of 4co3 by Molmil
Structure of PII signaling protein GlnZ from Azospirillum brasilense in complex with adenosine triphosphate
分子名称: ADENOSINE-5'-TRIPHOSPHATE, PII-LIKE PROTEIN PZ
著者Truan, D, Li, X.-D, Winkler, F.K.
登録日2014-01-25
公開日2014-05-28
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Structure and thermodynamics of effector molecule binding to the nitrogen signal transduction PII protein GlnZ from Azospirillum brasilense.
J. Mol. Biol., 426, 2014
4TWO
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BU of 4two by Molmil
Human EphA3 Kinase domain in complex with compound 164
分子名称: 5-{[3-carbamoyl-4-(3,4-dimethylphenyl)-5-methylthiophen-2-yl]amino}-5-oxopentanoic acid, Ephrin type-A receptor 3
著者Dong, J, Caflisch, A.
登録日2014-07-01
公開日2015-05-13
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.047 Å)
主引用文献Structural Analysis of the Binding of Type I, I1/2, and II Inhibitors to Eph Tyrosine Kinases.
Acs Med.Chem.Lett., 6, 2015
4TWN
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BU of 4twn by Molmil
Human EphA3 Kinase domain in complex with Birb796
分子名称: 1-(5-TERT-BUTYL-2-P-TOLYL-2H-PYRAZOL-3-YL)-3-[4-(2-MORPHOLIN-4-YL-ETHOXY)-NAPHTHALEN-1-YL]-UREA, Ephrin type-A receptor 3
著者Dong, J, Caflisch, A.
登録日2014-07-01
公開日2015-05-13
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.706 Å)
主引用文献Structural Analysis of the Binding of Type I, I1/2, and II Inhibitors to Eph Tyrosine Kinases.
Acs Med.Chem.Lett., 6, 2015
5YYF
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BU of 5yyf by Molmil
Crystal structure of AF9 YEATS domain in complex with a peptide inhibitor "PHQ-H3(Q5-K9)" modified at K9 with 2-furancarboyl group
分子名称: 2-FUROIC ACID, Peptide inhibitor PHQ-H3(Q5-K9), Protein AF-9, ...
著者Li, Y, Li, H.
登録日2017-12-09
公開日2018-11-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.903 Å)
主引用文献Structure-guided development of YEATS domain inhibitors by targeting pi-pi-pi stacking.
Nat. Chem. Biol., 14, 2018
5X8F
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BU of 5x8f by Molmil
Ternary complex structure of a double mutant I454RA456K of o-Succinylbenzoate CoA Synthetase (MenE) from Bacillus Subtilis bound with AMP and its product analogue OSB-NCoA at 1.76 angstrom
分子名称: 2-succinylbenzoate--CoA ligase, ADENOSINE MONOPHOSPHATE, CALCIUM ION, ...
著者Chen, Y, Guo, Z.
登録日2017-03-02
公開日2017-06-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.763 Å)
主引用文献Crystal structure of the thioesterification conformation of Bacillus subtilis o-succinylbenzoyl-CoA synthetase reveals a distinct substrate-binding mode
J. Biol. Chem., 292, 2017
5X8G
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BU of 5x8g by Molmil
Binary complex structure of a double mutant I454RA456K of o-Succinylbenzoate CoA Synthetase (MenE) from Bacillus Subtilis bound with its product analogue OSB-NCoA at 1.90 angstrom
分子名称: 2-succinylbenzoate--CoA ligase, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Chen, Y, Guo, Z.
登録日2017-03-02
公開日2017-06-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of the thioesterification conformation of Bacillus subtilis o-succinylbenzoyl-CoA synthetase reveals a distinct substrate-binding mode
J. Biol. Chem., 292, 2017

 

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