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4KNY
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BU of 4kny by Molmil
Crystal structure of the response regulator KdpE complexed to DNA in an active-like conformation
Descriptor: KDP operon transcriptional regulatory protein KdpE, Promoter DNA
Authors:Kumar, S, Narayanan, A, Yernool, D.A.
Deposit date:2013-05-10
Release date:2014-02-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.945 Å)
Cite:An asymmetric heterodomain interface stabilizes a response regulator-DNA complex.
Nat Commun, 5, 2014
4L85
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BU of 4l85 by Molmil
Crystal structure of receiver domain of KdpE D52A mutant from E. coli
Descriptor: IODIDE ION, KDP operon transcriptional regulatory protein KdpE
Authors:Kumar, S, Yernool, D.A.
Deposit date:2013-06-15
Release date:2014-02-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:An asymmetric heterodomain interface stabilizes a response regulator-DNA complex.
Nat Commun, 5, 2014
5Y2J
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BU of 5y2j by Molmil
Crystal structure of the oligomerization domain of NSP4 from rotavirus strain MF66
Descriptor: 1,2-ETHANEDIOL, NICKEL (II) ION, Nonstructural protein 4
Authors:Suguna, K, Kumar, S.
Deposit date:2017-07-26
Release date:2018-03-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:New tetrameric forms of the rotavirus NSP4 with antiparallel helices.
Arch. Virol., 163, 2018
5Y2E
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BU of 5y2e by Molmil
Crystal structure of the oligomerization domain of NSP4 from the rotavirus strain NCDV
Descriptor: Non-structural glycoprotein 4
Authors:Suguna, K, Kumar, S.
Deposit date:2017-07-25
Release date:2018-03-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:New tetrameric forms of the rotavirus NSP4 with antiparallel helices.
Arch. Virol., 163, 2018
5Y2H
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BU of 5y2h by Molmil
Crystal structure of the oligomerization domain of NSP4 from the rotavirus strain MF66
Descriptor: Nonstructural protein 4
Authors:Suguna, K, Kumar, S.
Deposit date:2017-07-25
Release date:2018-03-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:New tetrameric forms of the rotavirus NSP4 with antiparallel helices.
Arch. Virol., 163, 2018
5YQ8
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BU of 5yq8 by Molmil
Crystal structure of retroviral protease-like domain of Ddi1 from Leishmania major
Descriptor: DNA-damage inducible protein DDI1-like protein
Authors:Suguna, K, Kumar, S.
Deposit date:2017-11-06
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of the retroviral protease-like domain of a protozoal DNA damage-inducible 1 protein.
FEBS Open Bio, 8, 2018
5YS4
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BU of 5ys4 by Molmil
Crystal structure of retroviral protease-like domain of Ddi1 from Leishmania major
Descriptor: DNA-damage inducible protein DDI1-like protein
Authors:Suguna, K, Kumar, S.
Deposit date:2017-11-13
Release date:2018-11-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the retroviral protease-like domain of a protozoal DNA damage-inducible 1 protein.
FEBS Open Bio, 8, 2018
6CE0
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BU of 6ce0 by Molmil
Crystal structure of a HIV-1 clade B tier-3 isolate H078.14 UFO-BG Env trimer in complex with broadly neutralizing Fabs PGT124 and 35O22 at 4.6 Angstrom
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 35O22 Heavy chain, ...
Authors:Kumar, S, Sarkar, A, Wilson, I.A.
Deposit date:2018-02-09
Release date:2018-12-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (4.602 Å)
Cite:HIV-1 vaccine design through minimizing envelope metastability.
Sci Adv, 4, 2018
1BJF
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BU of 1bjf by Molmil
CRYSTAL STRUCTURE OF RECOMBINANT BOVINE NEUROCALCIN DELTA AT 2.4 ANGSTROMS
Descriptor: CALCIUM ION, NEUROCALCIN DELTA
Authors:Vijay-Kumar, S, Kumar, V.D.
Deposit date:1998-06-25
Release date:1999-07-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of recombinant bovine neurocalcin.
Nat.Struct.Biol., 6, 1999
1AC9
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BU of 1ac9 by Molmil
SOLUTION STRUCTURE OF A DNA DECAMER CONTAINING THE ANTIVIRAL DRUG GANCICLOVIR: COMBINED USE OF NMR, RESTRAINED MOLECULAR DYNAMICS, AND FULL RELAXATION REFINEMENT, 6 STRUCTURES
Descriptor: DNA
Authors:Foti, M, Marshalko, S, Schurter, E, Kumar, S, Beardsley, G.P, Schweitzer, B.I.
Deposit date:1997-02-17
Release date:1997-07-07
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of a DNA decamer containing the antiviral drug ganciclovir: combined use of NMR, restrained molecular dynamics, and full relaxation matrix refinement.
Biochemistry, 36, 1997
7X7N
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BU of 7x7n by Molmil
3D model of the 3-RBD up single trimeric spike protein of SARS-CoV2 in the presence of synthetic peptide SIH-5.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, Synthetic peptide SIH-5
Authors:Khatri, B, Pramanick, I, Malladi, S.K, Rajmani, R.S, Kumar, S, Ghosh, P, Sengupta, N, Rahisuddin, R, Kumaran, S, Ringe, R.P, Varadarajan, R, Dutta, S, Chatterjee, J.
Deposit date:2022-03-10
Release date:2022-04-27
Last modified:2022-11-16
Method:ELECTRON MICROSCOPY (4.47 Å)
Cite:A dimeric proteomimetic prevents SARS-CoV-2 infection by dimerizing the spike protein.
Nat.Chem.Biol., 18, 2022
1DQ7
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BU of 1dq7 by Molmil
THREE-DIMENSIONAL STRUCTURE OF A NEUROTOXIN FROM RED SCORPION (BUTHUS TAMULUS) AT 2.2A RESOLUTION.
Descriptor: NEUROTOXIN
Authors:Sharma, M, Yadav, S, Karthikeyan, S, Kumar, S, Paramasivam, M, Srinivasan, A, Singh, T.P.
Deposit date:1999-12-30
Release date:2000-12-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Three-dimensional Structure of a Neurotoxin from Red Scorpion (Buthus tamulus) at 2.2A Resolution
To be Published
3BM5
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BU of 3bm5 by Molmil
Crystal structure of O-acetyl-serine sulfhydrylase from Entamoeba histolytica in complex with cysteine
Descriptor: CYSTEINE, Cysteine synthase, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Krishna, C, Kumar, M, Kumar, S, Gourinath, S.
Deposit date:2007-12-12
Release date:2008-04-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of native O-acetyl-serine sulfhydrylase from Entamoeba histolytica and its complex with cysteine: structural evidence for cysteine binding and lack of interactions with serine acetyl transferase.
Proteins, 72, 2008
3OIH
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BU of 3oih by Molmil
Crystal Structure of the complex of xylanase-alpha-amylase inhibitor Protein (XAIP-I) with trehalose at 1.87 A resolution
Descriptor: ACETATE ION, Haementhin, PHOSPHATE ION, ...
Authors:Kumar, M, Kumar, S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2010-08-19
Release date:2010-09-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Crystal Structure of the complex of xylanase-alpha-amylase inhibitor Protein (XAIP-I) with trehalose at 1.87 A resolution
To be Published
4LQ6
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BU of 4lq6 by Molmil
Crystal structure of Rv3717 reveals a novel amidase from M. tuberculosis
Descriptor: CHLORIDE ION, N-acetymuramyl-L-alanine amidase-related protein, PLATINUM (II) ION, ...
Authors:Kumar, A, Kumar, S, Kumar, D, Mishra, A, Dewangan, R.P, Shrivastava, P, Ramachandran, S, Taneja, B.
Deposit date:2013-07-17
Release date:2013-12-04
Last modified:2014-01-15
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:The structure of Rv3717 reveals a novel amidase from Mycobacterium tuberculosis.
Acta Crystallogr.,Sect.D, 69, 2013
1UBQ
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BU of 1ubq by Molmil
STRUCTURE OF UBIQUITIN REFINED AT 1.8 ANGSTROMS RESOLUTION
Descriptor: UBIQUITIN
Authors:Vijay-Kumar, S, Bugg, C.E, Cook, W.J.
Deposit date:1987-01-02
Release date:1987-04-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of ubiquitin refined at 1.8 A resolution.
J.Mol.Biol., 194, 1987
3FG5
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BU of 3fg5 by Molmil
Crystal structure determination of a ternary complex of phospholipase A2 with a pentapeptide FLSYK and Ajmaline at 2.5 A resolution
Descriptor: AJMALINE, Group II Phospholipase A2, pentapeptide FLSYK
Authors:Kumar, M, Kumar, S, Vikram, G, Singh, N, Sinha, M, Bhushan, A, Kaur, P, Srinivasan, A, Sharma, S, Singh, T.P.
Deposit date:2008-12-05
Release date:2008-12-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure determination of a ternary complex of phospholipase A2 with a pentapeptide FLSYK and Ajmaline at 2.5 A resolution
To be Published
3S8H
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BU of 3s8h by Molmil
Structure of dihydrodipicolinate synthase complexed with 3-Hydroxypropanoic acid(HPA)at 2.70 A resolution
Descriptor: 3-HYDROXY-PROPANOIC ACID, Dihydrodipicolinate synthase
Authors:Kumar, M, Kaur, N, Kumar, S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2011-05-28
Release date:2011-06-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of dihydrodipicolinate synthase complexed with 3-Hydroxypropanoic acid(HPA)at 2.70 A resolution
TO BE PUBLISHED
1HIG
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BU of 1hig by Molmil
THREE-DIMENSIONAL STRUCTURE OF RECOMBINANT HUMAN INTERFERON-GAMMA.
Descriptor: INTERFERON-GAMMA
Authors:Ealick, S.E, Cook, W.J, Vijay-Kumar, S, Carson, M, Nagabhushan, T.L, Trotta, P.P, Bugg, C.E.
Deposit date:1991-10-03
Release date:1992-04-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Three-dimensional structure of recombinant human interferon-gamma.
Science, 252, 1991
3PUO
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BU of 3puo by Molmil
Crystal structure of dihydrodipicolinate synthase from Pseudomonas aeruginosa(PsDHDPS)complexed with L-lysine at 2.65A resolution
Descriptor: Dihydrodipicolinate synthase, GLYCEROL, LYSINE
Authors:Kaur, N, Kumar, M, Kumar, S, Gautam, A, Sinha, M, Kaur, P, Sharma, S, Sharma, R, Tewari, R, Singh, T.P.
Deposit date:2010-12-06
Release date:2010-12-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Biochemical studies and crystal structure determination of dihydrodipicolinate synthase from Pseudomonas aeruginosa
Int.J.Biol.Macromol., 48, 2011
1OYO
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BU of 1oyo by Molmil
Regulation of protease activity by melanin: Crystal structure of the complex formed between proteinase K and melanin monomers at 2.0 resolution
Descriptor: 3H-INDOLE-5,6-DIOL, CALCIUM ION, Proteinase K
Authors:Singh, N, Sharma, S, Kumar, S, Raman, G, Singh, T.P.
Deposit date:2003-04-06
Release date:2003-05-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Regulation of protease activity by melanin: Crystal structure of the complex formed between proteinase K and melanin monomers at 2.0 resolution
To be Published
4TUN
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BU of 4tun by Molmil
Crystal structure of Chicken egg white lysozyme adduct with Organophosphorus pesticide Monochrotophos
Descriptor: ACETATE ION, Lysozyme C, methyl [4-(methylamino)-4-oxidanylidene-but-2-en-2-yl] hydrogen phosphate
Authors:Amaraneni, S.R, Kumar, S, Samudrala, G.
Deposit date:2014-06-24
Release date:2014-07-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.925 Å)
Cite:Biophysical aspects of lysozyme adduct with monocrotophos.
Anal Bioanal Chem, 406, 2014
1QDK
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BU of 1qdk by Molmil
THE NMR STUDY OF DNA QUADRUPLEX STRUCTURE, (12MER) DNA
Descriptor: DNA (5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3'), MANGANESE (II) ION
Authors:Marathias, V.M, Wang, K.Y, Kumar, S, Swaminathan, S, Bolton, P.H.
Deposit date:1996-04-11
Release date:1996-11-08
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Determination of the number and location of the manganese binding sites of DNA quadruplexes in solution by EPR and NMR in the presence and absence of thrombin.
J.Mol.Biol., 260, 1996
1QDI
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BU of 1qdi by Molmil
THE NMR STUDY OF DNA QUADRUPLEX STRUCTURE, (12MER) DNA
Descriptor: DNA (5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3')
Authors:Marathias, V.M, Wang, K.Y, Kumar, S, Swaminathan, S, Bolton, P.H.
Deposit date:1996-04-11
Release date:1996-11-08
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Determination of the number and location of the manganese binding sites of DNA quadruplexes in solution by EPR and NMR in the presence and absence of thrombin.
J.Mol.Biol., 260, 1996
1QDF
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BU of 1qdf by Molmil
THE NMR STUDY OF DNA QUADRUPLEX STRUCTURE, APTAMER (15MER) DNA
Descriptor: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3')
Authors:Marathias, V.M, Wang, K.Y, Kumar, S, Swaminathan, S, Bolton, P.H.
Deposit date:1996-04-11
Release date:1996-11-08
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Determination of the number and location of the manganese binding sites of DNA quadruplexes in solution by EPR and NMR in the presence and absence of thrombin.
J.Mol.Biol., 260, 1996

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