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9RS6
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BU of 9rs6 by Molmil
Structure of the Ypt7 GEF complex Mon1-Ccz1 from Chaetomium Thermophilum
Descriptor: CCZ1/INTU/HSP4 first Longin domain-containing protein, Vacuolar fusion protein MON1
Authors:Wilmes, S, Schaefer, J, Moeller, A, Kuemmel, D.
Deposit date:2025-06-30
Release date:2025-07-30
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Mechanistic Adaptation of the Metazoan RabGEFs Mon1-Ccz1 and Fuzzy-Inturned
To Be Published
9RS7
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BU of 9rs7 by Molmil
Ypt7 in complex with its GEF Mon1-Ccz1
Descriptor: CCZ1/INTU/HSP4 first Longin domain-containing protein, Rab small monomeric GTPase-like protein, Vacuolar fusion protein MON1
Authors:Wilmes, S, Schaefer, J, Moeller, A, Kuemmel, D.
Deposit date:2025-06-30
Release date:2025-07-30
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Mechanistic Adaptation of the Metazoan RabGEFs Mon1-Ccz1 and Fuzzy-Inturned
To Be Published
9RS8
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BU of 9rs8 by Molmil
human Fuzzy-Inturned
Descriptor: Protein fuzzy homolog, Protein inturned
Authors:Wilmes, S, Schaefer, J, Januliene, D, Moeller, A, Kuemmel, D.
Deposit date:2025-06-30
Release date:2025-07-30
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Mechanistic Adaptation of the Metazoan RabGEFs Mon1-Ccz1 and Fuzzy-Inturned
To Be Published
9RS9
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BU of 9rs9 by Molmil
Rab23 in complex with Fuzzy-Inturned
Descriptor: Protein fuzzy homolog, Protein inturned, Ras-related protein Rab-23
Authors:Wilmes, S, Schaefer, J, Januliene, D, Moeller, A, Kuemmel, D.
Deposit date:2025-06-30
Release date:2025-07-30
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Mechanistic Adaptation of the Metazoan RabGEFs Mon1-Ccz1 and Fuzzy-Inturned
To Be Published
8CCK
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BU of 8cck by Molmil
Crystal structure of Mycobacterium smegmatis thioredoxin reductase in complex with fragment F2X-Entry H07
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, MAGNESIUM ION, ...
Authors:Fuesser, F.T, Koch, O, Kuemmel, D.
Deposit date:2023-01-27
Release date:2024-02-07
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Fragment-based design of mycobacterial thioredoxin reductase inhibitors based on computational exploration of a huge virtual space
To Be Published
8CCJ
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BU of 8ccj by Molmil
Crystal structure of Mycobacterium smegmatis thioredoxin reductase in complex with NADPH
Descriptor: DIMETHYL SULFOXIDE, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Fuesser, F.T, Koch, O, Kuemmel, D.
Deposit date:2023-01-27
Release date:2024-02-07
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Fragment-based design of mycobacterial thioredoxin reductase inhibitors based on computational exploration of a huge virtual space
To Be Published
8CCM
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BU of 8ccm by Molmil
Crystal structure of Mycobacterium smegmatis thioredoxin reductase in complex with Compound 2-06
Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Fuesser, F.T, Koch, O, Kuemmel, D.
Deposit date:2023-01-27
Release date:2024-02-07
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Fragment-based design of mycobacterial thioredoxin reductase inhibitors based on computational exploration of a huge virtual space
To Be Published
8CCL
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BU of 8ccl by Molmil
Crystal structure of Mycobacterium smegmatis thioredoxin reductase in complex with fragment F2X-Entry A09
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, MAGNESIUM ION, ...
Authors:Fuesser, F.T, Koch, O, Kuemmel, D.
Deposit date:2023-01-27
Release date:2024-02-07
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Fragment-based design of mycobacterial thioredoxin reductase inhibitors based on computational exploration of a huge virtual space
To Be Published
3RK3
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BU of 3rk3 by Molmil
Truncated SNARE complex with complexin
Descriptor: Complexin-1, SNAP25, Syntaxin 1a, ...
Authors:Kuemmel, D, Reinisch, K.M.
Deposit date:2011-04-17
Release date:2011-07-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Complexin cross-links prefusion SNAREs into a zigzag array.
Nat.Struct.Mol.Biol., 18, 2011
3RL0
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BU of 3rl0 by Molmil
Truncated SNARE complex with complexin (P1)
Descriptor: Complexin-1, Synaptosomal-associated protein 25, Syntaxin-1A, ...
Authors:Kuemmel, D, Reinisch, K.M.
Deposit date:2011-04-19
Release date:2011-07-27
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Complexin cross-links prefusion SNAREs into a zigzag array.
Nat.Struct.Mol.Biol., 18, 2011
3RK2
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BU of 3rk2 by Molmil
Truncated SNARE complex
Descriptor: CALCIUM ION, Synaptosomal-associated protein 25, Syntaxin-1A, ...
Authors:Kuemmel, D, Reinisch, K.M.
Deposit date:2011-04-17
Release date:2011-07-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Complexin cross-links prefusion SNAREs into a zigzag array.
Nat.Struct.Mol.Biol., 18, 2011
9QWP
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BU of 9qwp by Molmil
Structure of the human RalGAP2 complex
Descriptor: Ral GTPase-activating protein subunit alpha-2, Ral GTPase-activating protein subunit beta
Authors:Rasche, R, Klink, B.U, Gatsogiannis, C, Kuemmel, D.
Deposit date:2025-04-15
Release date:2025-07-16
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:The GTPase kappa B-Ras is an essential subunit of the RalGAP tumor suppressor complex.
J.Biol.Chem., 2025
8CPO
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BU of 8cpo by Molmil
Crystal structure of the PolB16_OarG intein variant S1A, N183A, C111A, C165A
Descriptor: PolB16 Intein Cys-less
Authors:Kattelmann, S, Pasch, T, Mootz, H.D, Kuemmel, D.
Deposit date:2023-03-03
Release date:2023-05-17
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural and biochemical analysis of a novel atypically split intein reveals a conserved histidine specific to cysteine-less inteins.
Chem Sci, 14, 2023
9HTH
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BU of 9hth by Molmil
Crystal structure of the fused, cysteine-less Aes123 PolB1 split intein (with S1A, N159A mutations)
Descriptor: DNA-directed DNA polymerase
Authors:Fitzian, K, Yilmaz, Z, Humberg, C, Mootz, H.D, Kuemmel, D.
Deposit date:2024-12-19
Release date:2025-05-07
Method:X-RAY DIFFRACTION (1.378 Å)
Cite:A cysteine-less and ultra-fast split intein rationally engineered from being aggregation-prone to highly efficient in protein trans-splicing.
Nat Commun, 16, 2025
7ZTY
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BU of 7zty by Molmil
Structure of Vps39 N-terminal domain from Chaetomium thermophilum
Descriptor: CNH domain-containing protein
Authors:Kiontke, S, Ungermann, C, Kuemmel, D.
Deposit date:2022-05-11
Release date:2022-09-21
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Structure of the HOPS tethering complex, a lysosomal membrane fusion machinery.
Elife, 11, 2022
8C7G
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BU of 8c7g by Molmil
Drosophila melanogaster Rab7 GEF complex Mon1-Ccz1-Bulli
Descriptor: Caffeine, calcium, zinc sensitivity 1, ...
Authors:Schaefer, J, Herrmann, E, Kuemmel, D, Moeller, A.
Deposit date:2023-01-15
Release date:2023-05-17
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of the metazoan Rab7 GEF complex Mon1-Ccz1-Bulli.
Proc.Natl.Acad.Sci.USA, 120, 2023
7P9E
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BU of 7p9e by Molmil
Chlamydomonas reinhardtii NADPH Dependent Thioredoxin Reductase 1 domain CS mutant
Descriptor: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, FLAVIN-ADENINE DINUCLEOTIDE, Thioredoxin reductase
Authors:Fuesser, F, Kuemmel, D.
Deposit date:2021-07-27
Release date:2022-01-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structural analysis revealed a novel conformation of the NTRC reductase domain from Chlamydomonas reinhardtii.
J.Struct.Biol., 214, 2021
9IGQ
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BU of 9igq by Molmil
Crystal structure of PPK2 class III from Erysipelotrichaceae bacterium in complex with AppCH2p and polyphosphate
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, BENZOIC ACID, GLYCEROL, ...
Authors:Rasche, R, Lawrence-Doerner, A.-M, Cornelissen, N.V, Kuemmel, D.
Deposit date:2025-02-20
Release date:2025-07-23
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure-guided engineering of a polyphosphate kinase 2 class III from an Erysipelotrichaceae bacterium to produce base-modified purine nucleotides.
Rsc Chem Biol, 2025
9IGR
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BU of 9igr by Molmil
Crystal structure of PPK2 class III from Erysipelotrichaceae bacterium in complex with polyphosphate
Descriptor: BENZOIC ACID, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Rasche, R, Lawrence-Doerner, A.-M, Cornelissen, N.V, Kuemmel, D.
Deposit date:2025-02-20
Release date:2025-07-23
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (2.311 Å)
Cite:Structure-guided engineering of a polyphosphate kinase 2 class III from an Erysipelotrichaceae bacterium to produce base-modified purine nucleotides.
Rsc Chem Biol, 2025
9QU1
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BU of 9qu1 by Molmil
Crystal structure of the human RalGAPA2 N-terminal domain with human kappaB-Ras1
Descriptor: MAGNESIUM ION, NF-kappa-B inhibitor-interacting Ras-like protein 1, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Rasche, R, Kuemmel, D.
Deposit date:2025-04-09
Release date:2025-07-16
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:The GTPase kappa B-Ras is an essential subunit of the RalGAP tumor suppressor complex.
J.Biol.Chem., 2025
7P84
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BU of 7p84 by Molmil
Crystal structure of L147A/I351A variant of S-adenosylmethionine synthetase from Methanocaldococcus jannaschii in complex with ONB-SAM (2-nitro benzyme S-adenosyl-methionine)
Descriptor: MAGNESIUM ION, S-adenosylmethionine synthase, TRIPHOSPHATE, ...
Authors:Herrmann, E, Peters, A, Cornelissen, N.V, Rentmeister, A, Kuemmel, D.
Deposit date:2021-07-21
Release date:2021-11-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.054 Å)
Cite:Visible-Light Removable Photocaging Groups Accepted by MjMAT Variant: Structural Basis and Compatibility with DNA and RNA Methyltransferases.
Chembiochem, 23, 2022
5LDD
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BU of 5ldd by Molmil
Crystal structure of the heterodimeric GEF Mon1-Ccz1 in complex with Ypt7
Descriptor: Ccz1, Mon1, Rab small monomeric GTPase-like protein, ...
Authors:Kiontke, S, Kuemmel, D.
Deposit date:2016-06-24
Release date:2017-01-18
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (2.496 Å)
Cite:Architecture and mechanism of the late endosomal Rab7-like Ypt7 guanine nucleotide exchange factor complex Mon1-Ccz1.
Nat Commun, 8, 2017
6ZGQ
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BU of 6zgq by Molmil
AceL NrdHF class 3 split intein GSH linked splice inactive variant - C124A, N146A
Descriptor: AceL NrdHF-1-1 Intein, IODIDE ION
Authors:Hoffmann, S, Mootz, H.D, Kuemmel, D, Singh, R.
Deposit date:2020-06-19
Release date:2020-09-16
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Biochemical and Structural Characterization of an Unusual and Naturally Split Class 3 Intein.
Chembiochem, 22, 2021
7ZU0
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BU of 7zu0 by Molmil
HOPS tethering complex from yeast
Descriptor: E3 ubiquitin-protein ligase PEP5, Vacuolar membrane protein PEP3, Vacuolar morphogenesis protein 6, ...
Authors:Shvarev, D, Schoppe, J, Koenig, C, Perz, A, Fuellbrunn, N, Kiontke, S, Langemeyer, L, Januliene, D, Schnelle, K, Kuemmel, D, Froehlich, F, Moeller, A, Ungermann, C.
Deposit date:2022-05-11
Release date:2022-09-28
Last modified:2025-04-16
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structure of the HOPS tethering complex, a lysosomal membrane fusion machinery.
Elife, 11, 2022
7P9D
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BU of 7p9d by Molmil
Crystal structure of Chlamydomonas reinhardtii NADPH Dependent Thioredoxin Reductase 1 domain
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Thioredoxin reductase
Authors:Singh, R.K, Marchetti, G.M, Hippler, M, Kuemmel, D.
Deposit date:2021-07-27
Release date:2022-01-12
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural analysis revealed a novel conformation of the NTRC reductase domain from Chlamydomonas reinhardtii.
J.Struct.Biol., 214, 2021

 

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