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4J2Q
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Crystal structure of C-terminally truncated arrestin reveals mechanism of arrestin activation
分子名称: S-arrestin
著者Kim, Y.J, Scheerer, P, Choe, H.-W.
登録日2013-02-05
公開日2013-05-01
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure of pre-activated arrestin p44.
Nature, 497, 2013
5ZA0
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A cryo-protectant induces the conformational change of glyceraldehyde-3-phosphate dehydrogenase
分子名称: Glyceraldehyde-3-phosphate dehydrogenase A, SULFATE ION, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
著者Kim, Y.J.
登録日2018-02-06
公開日2018-05-30
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A cryoprotectant induces conformational change in glyceraldehyde-3-phosphate dehydrogenase.
Acta Crystallogr F Struct Biol Commun, 74, 2018
4X98
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Immunoglobulin Fc heterodimer variant
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Ig gamma-1 chain C region
著者Seok, S.H, Choi, H.J, Kim, Y.J, Seo, M.D, Kim, Y.S.
登録日2014-12-11
公開日2015-06-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.499 Å)
主引用文献Crystal structures of immunoglobulin Fc heterodimers reveal the molecular basis for heterodimer formation.
Mol.Immunol., 65, 2015
4X99
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Immunoglobulin Fc heterodimers variant
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Ig gamma-1 chain C region
著者Seok, S.H, Choi, H.J, Kim, Y.J, Seo, M.D, Kim, Y.S.
登録日2014-12-11
公開日2015-06-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.498 Å)
主引用文献Crystal structures of immunoglobulin Fc heterodimers reveal the molecular basis for heterodimer formation.
Mol.Immunol., 65, 2015
7VCJ
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Arginine kinase H227A from Daphnia magna
分子名称: Arginine kinase, NITRATE ION, PHOSPHATE ION
著者Kim, D.S, Jang, K, Kim, W.S, Kim, Y.J, Park, J.H.
登録日2021-09-03
公開日2022-02-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal Structure of H227A Mutant of Arginine Kinase in Daphnia magna Suggests the Importance of Its Stability.
Molecules, 27, 2022
3QD6
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Crystal structure of the CD40 and CD154 (CD40L) complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CD40 ligand, Tumor necrosis factor receptor superfamily member 5
著者Lee, J.-O, Kim, Y.J, Song, D.H, Kim, H.M, Park, B.S.
登録日2011-01-18
公開日2011-02-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Crystallographic and mutational analysis of the CD40-CD154 complex and its implications for receptor activation
J.Biol.Chem., 286, 2011
4M4D
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BU of 4m4d by Molmil
Crystal structure of lipopolysaccharide binding protein
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, Lipopolysaccharide-binding protein
著者Eckert, J.K, Kim, Y.J, Kim, J.I, Gurtler, K, Oh, D.Y, Ploeg, A.H, Pickkers, P, Lundvall, L, Hamann, L, Giamarellos-Bourboulis, E, Kubarenko, A.V, Weber, A.N, Kabesch, M, Kumpf, O, An, H.J, Lee, J.O, Schumann, R.R.
登録日2013-08-07
公開日2013-10-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.909 Å)
主引用文献The crystal structure of lipopolysaccharide binding protein reveals the location of a frequent mutation that impairs innate immunity.
Immunity, 39, 2013
7F1W
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X-ray crystal structure of visual arrestin complexed with inositol hexaphosphate
分子名称: INOSITOL HEXAKISPHOSPHATE, S-arrestin
著者Kang, M, Jang, K, Eger, B.T, Ernst, O.P, Choe, H.W, Kim, Y.J.
登録日2021-06-10
公開日2021-10-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.097 Å)
主引用文献Structural evidence for visual arrestin priming via complexation of phosphoinositols.
Structure, 30, 2022
7F1X
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X-ray crystal structure of visual arrestin complexed with inositol 1,4,5-triphosphate
分子名称: 1,2-ETHANEDIOL, D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE, PENTANEDIAL, ...
著者Jang, K, Kang, M, Eger, B.T, Choe, H.W, Ernst, O.P, Kim, Y.J.
登録日2021-06-10
公開日2021-10-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural evidence for visual arrestin priming via complexation of phosphoinositols.
Structure, 30, 2022
3WMK
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Crystal structure of Hen egg-white lysozyme in pH 4.5 Sodium Acetatewith 1M NaCl at 277K
分子名称: Lysozyme C
著者Lim, H, Rho, J, Hyun, J.K, Kim, Y.J.
登録日2013-11-19
公開日2014-10-08
実験手法X-RAY DIFFRACTION (1.46 Å)
主引用文献Crystal structure of Hen egg-white lysozyme in pH 4.5 Sodium Acetatewith 1M NaCl at 277K
TO BE PUBLISHED
3DQB
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BU of 3dqb by Molmil
Crystal structure of the active G-protein-coupled receptor opsin in complex with a C-terminal peptide derived from the Galpha subunit of transducin
分子名称: 11meric peptide form Guanine nucleotide-binding protein G(t) subunit alpha-1, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PALMITIC ACID, ...
著者Scheerer, P, Park, J.H, Hildebrand, P.W, Kim, Y.J, Krauss, N, Choe, H.-W, Hofmann, K.P, Ernst, O.P.
登録日2008-07-09
公開日2008-09-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structure of opsin in its G-protein-interacting conformation
Nature, 455, 2008
3PQR
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Crystal structure of Metarhodopsin II in complex with a C-terminal peptide derived from the Galpha subunit of transducin
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, Guanine nucleotide-binding protein G(t) subunit alpha-1, ...
著者Choe, H.-W, Kim, Y.J, Park, J.H, Morizumi, T, Pai, E.F, Krauss, N, Hofmann, K.P, Scheerer, P, Ernst, O.P.
登録日2010-11-26
公開日2011-03-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Crystal structure of metarhodopsin II.
Nature, 471, 2011
3PXO
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BU of 3pxo by Molmil
Crystal structure of Metarhodopsin II
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PALMITIC ACID, RETINAL, ...
著者Choe, H.-W, Kim, Y.J, Park, J.H, Morizumi, T, Pai, E.F, Krauss, N, Hofmann, K.P, Scheerer, P, Ernst, O.P.
登録日2010-12-10
公開日2011-03-09
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure of metarhodopsin II.
Nature, 471, 2011
4NHI
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BU of 4nhi by Molmil
Crystal structure of Hen egg-white lysozyme in Tris buffer at pH 7.5 with Magnesium formate
分子名称: Lysozyme C
著者Lim, H, Rho, J, Hyun, J.K, Kim, Y.J.
登録日2013-11-05
公開日2014-11-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Crystal structure of Hen egg-white lysozyme in Tris buffer at pH 7.5 with Magnesium formate
To be Published
6C0V
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BU of 6c0v by Molmil
Molecular structure of human P-glycoprotein in the ATP-bound, outward-facing conformation
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Multidrug resistance protein 1
著者Kim, Y.J, Chen, J.
登録日2018-01-02
公開日2018-01-31
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Molecular structure of human P-glycoprotein in the ATP-bound, outward-facing conformation.
Science, 359, 2018
6XFP
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BU of 6xfp by Molmil
Crystal Structure of BRAF kinase domain bound to Belvarafenib
分子名称: 4-amino-N-{1-[(3-chloro-2-fluorophenyl)amino]-6-methylisoquinolin-5-yl}thieno[3,2-d]pyrimidine-7-carboxamide, CHLORIDE ION, Serine/threonine-protein kinase B-raf
著者Yin, J, Sudhamsu, J.
登録日2020-06-16
公開日2021-03-10
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献ARAF mutations confer resistance to the RAF inhibitor belvarafenib in melanoma.
Nature, 594, 2021
8JZJ
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BU of 8jzj by Molmil
E.coli Glyceraldehyde-3-phosphate dehydrogenase structure under cryoprotect condition of ammonium sulfate
分子名称: Glyceraldehyde-3-phosphate dehydrogenase, SULFATE ION
著者Jang, K, Hlaing, S.H.S, Kim, H.G, Kim, N, Choe, H.W, Kim, Y.J.
登録日2023-07-05
公開日2024-02-14
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献E.coli Glyceraldehyde-3-phosphate dehydrogenase structure under cryoprotect condition of ammonium sulfate
To Be Published
4R1N
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BU of 4r1n by Molmil
Crystal structure of (S)-3-hydroxybutylryl-CoA dehydrogenase form the n-butanol sysnthesizing bacterium, Clostridium butyricum.
分子名称: 3-hydroxybutyryl-CoA dehydrogenase
著者Kim, E.J, Kim, S.W, Kim, K.J.
登録日2014-08-07
公開日2015-07-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of (S)-3-hydroxybutyryl-CoA dehydrogenase from Clostridium butyricum and its mutations that enhance reaction kinetics
J MICROBIOL BIOTECHNOL., 24, 2014
7MP2
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BU of 7mp2 by Molmil
CRYSTAL STRUCTURE OF NATIVE BOVINE ARRESTIN 1 IN COMPLEX WITH 1D-MYO-INOSITOL 1,5-BISDIPHOSPHATE TETRAKISPHOSPHATE (1,5-PP IP4)
分子名称: (1R,3S,4R,5S,6R)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl bis[trihydrogen (diphosphate)], S-arrestin
著者Sander, C.L, Palczewski, K, Kiser, P.D.
登録日2021-05-04
公開日2021-10-13
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural evidence for visual arrestin priming via complexation of phosphoinositols.
Structure, 30, 2022
7MOR
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CRYSTAL STRUCTURE OF NATIVE BOVINE ARRESTIN 1 IN COMPLEX WITH 5-METHYLENEBIPHOSPHONATE INOSITOL PENTAKISPHAOPHATE (5-PCP IP5)
分子名称: Methylenebisphosphonate inositol pentakisphosphate, S-arrestin
著者Sander, C.L, Palczewski, K, Kiser, P.D.
登録日2021-05-03
公開日2021-10-13
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural evidence for visual arrestin priming via complexation of phosphoinositols.
Structure, 30, 2022
7MP1
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CRYSTAL STRUCTURE OF NATIVE BOVINE ARRESTIN 1 IN COMPLEX WITH 1,5-DI-METHYLENEBISPHOSPHONATE INOSITOL TETRAKISPHOSPHATE (1,5-PCP-IP4)
分子名称: S-arrestin, {[(1R,3S,4S,5R,6S)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl]bis[oxy(hydroxyphosphoryl)methanediyl]}bis(phosphonic acid)
著者Sander, C.L, Palczewski, K, Kiser, P.D.
登録日2021-05-04
公開日2021-10-13
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.66 Å)
主引用文献Structural evidence for visual arrestin priming via complexation of phosphoinositols.
Structure, 30, 2022
7MP0
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CRYSTAL STRUCTURE OF NATIVE BOVINE ARRESTIN 1 IN COMPLEX WITH 1D-MYO-INOSITOL 5-DIPHOSPHATE PENTAKISPHOSPHATE (5-PP IP5)
分子名称: (1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate, 2-ETHOXYETHANOL, S-arrestin
著者Sander, C.L, Palczewski, K, Kiser, P.D.
登録日2021-05-04
公開日2021-10-13
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural evidence for visual arrestin priming via complexation of phosphoinositols.
Structure, 30, 2022
5BY2
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Sedoheptulose 7-phosphate isomerase from Colwellia psychrerythraea strain 34H
分子名称: Phosphoheptose isomerase
著者Lee, J.H, Chang, J.H, Do, H, Yun, J.S.
登録日2015-06-10
公開日2015-12-23
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structure and Comparative Sequence Analysis of GmhA from Colwellia psychrerythraea Strain 34H Provides Insight into Functional Similarity with DiaA
Mol.Cells, 38, 2015
4TSV
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HIGH RESOLUTION CRYSTAL STRUCTURE OF A HUMAN TNF-ALPHA MUTANT
分子名称: TUMOR NECROSIS FACTOR-ALPHA
著者Cha, S.-S, Kim, J.-S, Cho, H.-S, Oh, B.-H.
登録日1997-10-29
公開日1998-12-30
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献High resolution crystal structure of a human tumor necrosis factor-alpha mutant with low systemic toxicity.
J.Biol.Chem., 273, 1998
3RFJ
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Design of a binding scaffold based on variable lymphocyte receptors of jawless vertebrates by module engineering
分子名称: Internalin B, repeat modules, Variable lymphocyte receptor, ...
著者Kim, H.J, Cheong, H.K, Jeon, Y.H.
登録日2011-04-06
公開日2012-03-14
最終更新日2017-08-16
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Design of a binding scaffold based on variable lymphocyte receptors of jawless vertebrates by module engineering
Proc.Natl.Acad.Sci.USA, 109, 2012

 

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