1K5V
 
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8IS3
 | | Structural model for the micelle-bound indolicidin-like peptide in solution | | Descriptor: | Indolicidin-like antimicrobial peptide | | Authors: | Kim, B, Ko, Y.H, Kim, J, Lee, J, Nam, C.H, Kim, J.H. | | Deposit date: | 2023-03-20 | | Release date: | 2024-03-20 | | Method: | SOLUTION NMR | | Cite: | Structural model for the micelle-bound indolicidin-like peptide in solution
To Be Published
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8H0T
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8H0S
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8H1A
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8H27
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8H1B
 | | Crystal structure of MnmM from S. aureus complexed with SAM and tRNA anti-codon stem loop (ASL) (1.55 A) | | Descriptor: | RNA (5'-R(*AP*CP*GP*GP*AP*CP*UP*UP*UP*GP*AP*CP*UP*CP*CP*GP*U)-3'), S-ADENOSYLMETHIONINE, SODIUM ION, ... | | Authors: | Kim, J, Cho, G, Lee, J. | | Deposit date: | 2022-10-01 | | Release date: | 2023-01-25 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (1.55 Å) | | Cite: | Identification of a novel 5-aminomethyl-2-thiouridine methyltransferase in tRNA modification.
Nucleic Acids Res., 51, 2023
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6A6K
 | | Crystal structure of Estrogen-related Receptor-3 (ERR-gamma) ligand binding domain with DN201000 | | Descriptor: | 3-[(~{E})-5-oxidanyl-2-phenyl-1-[4-(4-propan-2-ylpiperazin-1-yl)phenyl]pent-1-enyl]phenol, Estrogen-related receptor gamma | | Authors: | Yoon, H, Kim, J, Chin, J, Cho, S.J, Song, J. | | Deposit date: | 2018-06-28 | | Release date: | 2019-04-10 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.9 Å) | | Cite: | Discovery of Potent, Selective, and Orally Bioavailable Estrogen-Related Receptor-gamma Inverse Agonists To Restore the Sodium Iodide Symporter Function in Anaplastic Thyroid Cancer.
J. Med. Chem., 62, 2019
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6L6R
 | | Crystal structure of LRP6 E1E2-SOST complex | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ... | | Authors: | Choi, H.-J, Kim, J. | | Deposit date: | 2019-10-29 | | Release date: | 2020-10-28 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (3.8 Å) | | Cite: | Sclerostin inhibits Wnt signaling through tandem interaction with two LRP6 ectodomains.
Nat Commun, 11, 2020
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6KNR
 | | Crystal structure of Estrogen-related receptor gamma ligand-binding domain with DN200699 | | Descriptor: | (E)-4-(1-(4-(1-cyclopropylpiperidin-4-yl)phenyl)-5-hydroxy-2-phenylpent-1-en-1-yl)phenol, Estrogen-related receptor gamma | | Authors: | Yoon, H, Kim, J, Chin, J, Song, J, Cho, S.J. | | Deposit date: | 2019-08-07 | | Release date: | 2020-08-12 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.804 Å) | | Cite: | An orally available inverse agonist of estrogen-related receptor gamma showed expanded efficacy for the radioiodine therapy of poorly differentiated thyroid cancer.
Eur.J.Med.Chem., 205, 2020
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5GHG
 | | Transaminase W58L with SMBA | | Descriptor: | 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Aminotransferase class-III | | Authors: | Kim, J, Park, J. | | Deposit date: | 2016-06-20 | | Release date: | 2017-05-24 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Active Site Engineering of omega-Transaminase Guided by Docking Orientation Analysis and Virtual Activity Screening
Acs Catalysis, 7, 2017
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5GHF
 | | Transaminase with L-ala | | Descriptor: | 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Aminotransferase class-III | | Authors: | Kim, J, Park, J. | | Deposit date: | 2016-06-19 | | Release date: | 2017-05-24 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Active Site Engineering of omega-Transaminase Guided by Docking Orientation Analysis and Virtual Activity Screening
Acs Catalysis, 7, 2017
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7WJP
 | | Structure of PadR-like protein from Listeria monocytogenes | | Descriptor: | PadR family transcriptional regulator | | Authors: | Hong, M, Kim, J. | | Deposit date: | 2022-01-07 | | Release date: | 2022-04-20 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.25 Å) | | Cite: | Structure-based molecular characterization of the LltR transcription factor from Listeria monocytogenes.
Biochem.Biophys.Res.Commun., 600, 2022
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1Z3A
 | | Crystal structure of tRNA adenosine deaminase TadA from Escherichia coli | | Descriptor: | ZINC ION, tRNA-specific adenosine deaminase | | Authors: | Malashkevich, V, Kim, J, Lisbin, M, Almo, S.C, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC) | | Deposit date: | 2005-03-10 | | Release date: | 2006-02-21 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (2.03 Å) | | Cite: | Structural and kinetic characterization of Escherichia coli TadA, the wobble-specific tRNA deaminase.
Biochemistry, 45, 2006
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7EQJ
 | | crystal structure of E. coli Valine tRNA | | Descriptor: | MAGNESIUM ION, RNA (76-MER), SODIUM ION | | Authors: | Kim, J, Jeong, H. | | Deposit date: | 2021-05-03 | | Release date: | 2022-01-19 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.043 Å) | | Cite: | Unique anticodon loop conformation with the flipped-out wobble nucleotide in the crystal structure of unbound tRNA Val .
Rna, 27, 2021
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7BWH
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7CT9
 | | Crystal structure of SAH bound CmoB from Vibrio Vulnificus | | Descriptor: | MALONATE ION, PHOSPHATE ION, S-ADENOSYL-L-HOMOCYSTEINE, ... | | Authors: | Kim, J, Jeong, S. | | Deposit date: | 2020-08-18 | | Release date: | 2021-03-03 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Structural snapshots of CmoB in various states during wobble uridine modification of tRNA.
Biochem.Biophys.Res.Commun., 534, 2021
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7CT8
 | | Crystal structure of apo CmoB from Vibrio Vulnificus | | Descriptor: | tRNA U34 carboxymethyltransferase | | Authors: | Kim, J, Jeong, S. | | Deposit date: | 2020-08-18 | | Release date: | 2021-03-03 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Structural snapshots of CmoB in various states during wobble uridine modification of tRNA.
Biochem.Biophys.Res.Commun., 534, 2021
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7CTA
 | | Crystal structure of Cx-SAM bound CmoB from Vibrio vulnificus | | Descriptor: | (2S)-4-[{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}(carboxylatomethyl)sulfonio] -2-ammoniobutanoate, SULFATE ION, tRNA U34 carboxymethyltransferase | | Authors: | Kim, J, Jeong, S. | | Deposit date: | 2020-08-18 | | Release date: | 2021-03-03 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.9 Å) | | Cite: | Structural snapshots of CmoB in various states during wobble uridine modification of tRNA.
Biochem.Biophys.Res.Commun., 534, 2021
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7CNY
 | | Crystal structure of 8PE bound PSD from E. coli (2.12 A) | | Descriptor: | 1,2-Dioctanoyl-SN-Glycero-3-Phosphoethanolamine, DODECYL-BETA-D-MALTOSIDE, Phosphatidylserine decarboxylase alpha chain, ... | | Authors: | Kim, J, Cho, G. | | Deposit date: | 2020-08-03 | | Release date: | 2021-03-24 | | Last modified: | 2023-11-15 | | Method: | X-RAY DIFFRACTION (2.12 Å) | | Cite: | Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
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7CNZ
 | | Crystal structure of 10PE bound PSD from E. coli (2.70 A) | | Descriptor: | 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, PHOSPHATE ION, Phosphatidylserine decarboxylase alpha chain, ... | | Authors: | Kim, J, Cho, G. | | Deposit date: | 2020-08-03 | | Release date: | 2021-03-24 | | Last modified: | 2023-11-15 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
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7CNW
 | | Crystal structure of Apo PSD from E. coli (1.90 A) | | Descriptor: | DODECYL-BETA-D-MALTOSIDE, Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain, ... | | Authors: | Kim, J, Cho, G. | | Deposit date: | 2020-08-03 | | Release date: | 2021-03-24 | | Last modified: | 2023-11-15 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
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7CNX
 | | Crystal structure of Apo PSD from E. coli (2.63 A) | | Descriptor: | Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain | | Authors: | Kim, J, Cho, G. | | Deposit date: | 2020-08-03 | | Release date: | 2021-03-24 | | Last modified: | 2023-11-15 | | Method: | X-RAY DIFFRACTION (2.63 Å) | | Cite: | Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
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4GRA
 | | Crystal structure of SULT1A1 bound with PAP | | Descriptor: | ADENOSINE-3'-5'-DIPHOSPHATE, Sulfotransferase 1A1 | | Authors: | Kim, J, Cook, I, Wang, T, Falany, C.N, Leyh, T.S, Almo, S.C. | | Deposit date: | 2012-08-24 | | Release date: | 2013-01-16 | | Last modified: | 2023-09-13 | | Method: | X-RAY DIFFRACTION (2.56 Å) | | Cite: | The gate that governs sulfotransferase selectivity.
Biochemistry, 52, 2013
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6JCM
 | | Crystal structure of ligand-free Rv0187. | | Descriptor: | ACETATE ION, Probable O-methyltransferase | | Authors: | Kim, J, Lee, S. | | Deposit date: | 2019-01-29 | | Release date: | 2019-12-11 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.08 Å) | | Cite: | Structural and biochemical characterization of Rv0187, an O-methyltransferase from Mycobacterium tuberculosis.
Sci Rep, 9, 2019
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