7VR7
| Inward-facing structure of human EAAT2 in the WAY213613-bound state | 分子名称: | (2S)-2-azanyl-4-[[4-[2-bromanyl-4,5-bis(fluoranyl)phenoxy]phenyl]amino]-4-oxidanylidene-butanoic acid, (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, ... | 著者 | Kato, T, Kusakizako, T, Yamashita, K, Nishizawa, T, Nureki, O. | 登録日 | 2021-10-22 | 公開日 | 2022-08-10 | 最終更新日 | 2022-09-28 | 実験手法 | ELECTRON MICROSCOPY (2.8 Å) | 主引用文献 | Structural insights into inhibitory mechanism of human excitatory amino acid transporter EAAT2. Nat Commun, 13, 2022
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7VR8
| Inward-facing structure of human EAAT2 in the substrate-free state | 分子名称: | (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CHOLESTEROL, ... | 著者 | Kato, T, Kusakizako, T, Yamashita, K, Nishizawa, T, Nureki, O. | 登録日 | 2021-10-22 | 公開日 | 2022-08-10 | 最終更新日 | 2022-09-28 | 実験手法 | ELECTRON MICROSCOPY (3.2 Å) | 主引用文献 | Structural insights into inhibitory mechanism of human excitatory amino acid transporter EAAT2. Nat Commun, 13, 2022
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6IU9
| Crystal structure of cytoplasmic metal binding domain with iron ions | 分子名称: | FE (II) ION, VIT1, ZINC ION | 著者 | Kato, T, Nishizawa, T, Yamashita, K, Kumazaki, K, Ishitani, R, Nureki, O. | 登録日 | 2018-11-27 | 公開日 | 2019-02-06 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Crystal structure of plant vacuolar iron transporter VIT1. Nat Plants, 5, 2019
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6IU5
| Crystal structure of cytoplasmic metal binding domain with zinc ions | 分子名称: | CHLORIDE ION, VIT1, ZINC ION | 著者 | Kato, T, Nishizawa, T, Yamashita, K, Kumazaki, K, Ishitani, R, Nureki, O. | 登録日 | 2018-11-27 | 公開日 | 2019-02-06 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | 主引用文献 | Crystal structure of plant vacuolar iron transporter VIT1. Nat Plants, 5, 2019
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6IU4
| Crystal structure of iron transporter VIT1 with cobalt ion | 分子名称: | COBALT (II) ION, VIT1, ZINC ION | 著者 | Kato, T, Nishizawa, T, Yamashita, K, Taniguchi, R, Kumazaki, K, Ishitani, R, Nureki, O. | 登録日 | 2018-11-27 | 公開日 | 2019-02-06 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (3.5 Å) | 主引用文献 | Crystal structure of plant vacuolar iron transporter VIT1. Nat Plants, 5, 2019
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6IU8
| Crystal structure of cytoplasmic metal binding domain with cobalt ions | 分子名称: | COBALT (II) ION, VIT1, ZINC ION | 著者 | Kato, T, Nishizawa, T, Yamashita, K, Kumazaki, K, Ishitani, R, Nureki, O. | 登録日 | 2018-11-27 | 公開日 | 2019-02-06 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Crystal structure of plant vacuolar iron transporter VIT1. Nat Plants, 5, 2019
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6IU3
| Crystal structure of iron transporter VIT1 with zinc ions | 分子名称: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, VIT1, ZINC ION | 著者 | Kato, T, Nishizawa, T, Yamashita, K, Taniguchi, R, Kumazaki, K, Ishitani, R, Nureki, O. | 登録日 | 2018-11-27 | 公開日 | 2019-02-06 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Crystal structure of plant vacuolar iron transporter VIT1. Nat Plants, 5, 2019
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6IU6
| Crystal structure of cytoplasmic metal binding domain with nickel ions | 分子名称: | NICKEL (II) ION, VIT1, ZINC ION | 著者 | Kato, T, Nishizawa, T, Yamashita, K, Kumazaki, K, Ishitani, R, Nureki, O. | 登録日 | 2018-11-27 | 公開日 | 2019-02-06 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | Crystal structure of plant vacuolar iron transporter VIT1. Nat Plants, 5, 2019
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6K9Q
| Structure of the native supercoiled hook as a universal joint | 分子名称: | Flagellar hook protein FlgE | 著者 | Kato, T, Miyata, T, Makino, F, Horvath, P, Namba, K. | 登録日 | 2019-06-17 | 公開日 | 2020-02-12 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (3.1 Å) | 主引用文献 | Structure of the native supercoiled flagellar hook as a universal joint. Nat Commun, 10, 2019
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7WLS
| Crystal structure of the multidrug efflux transporter BpeB from Burkholderia pseudomallei | 分子名称: | Efflux pump membrane transporter, TETRAETHYLENE GLYCOL, UNDECYL-MALTOSIDE | 著者 | Kato, T, Hung, L.-W, Yamashita, E, Okada, U, Terwilliger, T.C, Murakami, S. | 登録日 | 2022-01-13 | 公開日 | 2023-07-19 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.94 Å) | 主引用文献 | Crystal structures of multidrug efflux transporters from Burkholderia pseudomallei suggest details of transport mechanism. Proc.Natl.Acad.Sci.USA, 120, 2023
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7WLV
| Crystal Structure of the Multidrug effulx transporter BpeF from Burkholderia pseudomallei. | 分子名称: | DODECYL-BETA-D-MALTOSIDE, Efflux pump membrane transporter | 著者 | Kato, T, Hung, L.-W, Yamashita, E, Okada, U, Terwilliger, T.C, Murakami, S. | 登録日 | 2022-01-13 | 公開日 | 2023-07-19 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Crystal structures of multidrug efflux transporters from Burkholderia pseudomallei suggest details of transport mechanism. Proc.Natl.Acad.Sci.USA, 120, 2023
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6O97
| Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution | 分子名称: | (1R,2R,3S,4R,6S)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-beta-D-ribofuranosyl]oxy}-3-hydroxyc yclohexyl 2-amino-2,4-dideoxy-4-propyl-alpha-D-glucopyranoside, 16S Ribosomal RNA, 23S Ribosomal RNA, ... | 著者 | Matsushita, T, Sati, G.C, Kondasinghe, N, Pirrone, M.G, Kato, T, Waduge, P, Kumar, H.S, Sanchon, A.C, Dobosz-Bartoszek, M, Shcherbakov, D, Juhas, M, Hobbie, S.N, Schrepfer, T, Chow, C.S, Polikanov, Y.S, Schacht, J, Vasella, A, Bottger, E.C, Crich, D. | 登録日 | 2019-03-13 | 公開日 | 2019-04-17 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | 主引用文献 | Design, Multigram Synthesis, and in Vitro and in Vivo Evaluation of Propylamycin: A Semisynthetic 4,5-Deoxystreptamine Class Aminoglycoside for the Treatment of Drug-Resistant Enterobacteriaceae and Other Gram-Negative Pathogens. J. Am. Chem. Soc., 141, 2019
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3J0R
| Model of a type III secretion system needle based on a 7 Angstrom resolution cryoEM map | 分子名称: | Protein mxiH | 著者 | Fujii, T, Cheung, M, Blanco, A, Kato, T, Blocker, A.J, Namba, K. | 登録日 | 2011-11-03 | 公開日 | 2012-02-29 | 最終更新日 | 2024-02-21 | 実験手法 | ELECTRON MICROSCOPY (7.7 Å) | 主引用文献 | Structure of a type III secretion needle at 7-A resolution provides insights into its assembly and signaling mechanisms. Proc.Natl.Acad.Sci.USA, 109, 2012
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4D3E
| Tetramer of IpaD, modified from 2J0O, fitted into negative stain electron microscopy reconstruction of the wild type tip complex from the type III secretion system of Shigella flexneri | 分子名称: | INVASIN IPAD | 著者 | Cheung, M, Shen, D.-K, Makino, F, Kato, T, Roehrich, D, Martinez-Argudo, I, Walker, M.L, Murillo, I, Liu, X, Pain, M, Brown, J, Frazer, G, Mantell, J, Mina, P, Todd, T, Sessions, R.B, Namba, K, Blocker, A.J. | 登録日 | 2014-10-21 | 公開日 | 2014-12-10 | 最終更新日 | 2020-04-29 | 実験手法 | ELECTRON MICROSCOPY (2.12 Å) | 主引用文献 | Three-Dimensional Electron Microscopy Reconstruction and Cysteine-Mediated Crosslinking Provide a Model of the T3Ss Needle Tip Complex. Mol.Microbiol., 95, 2015
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8BVT
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8BVS
| Cryo-EM structure of rat SLC22A6 bound to tenofovir | 分子名称: | CHLORIDE ION, Solute carrier family 22 member 6, Synthetic nanobody (Sybody), ... | 著者 | Parker, J.L, Kato, T, Newstead, S. | 登録日 | 2022-12-05 | 公開日 | 2023-07-19 | 最終更新日 | 2023-11-22 | 実験手法 | ELECTRON MICROSCOPY (3.61 Å) | 主引用文献 | Molecular basis for selective uptake and elimination of organic anions in the kidney by OAT1. Nat.Struct.Mol.Biol., 30, 2023
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8BW7
| Cryo-EM structure of rat SLC22A6 bound to alpha-ketoglutaric acid | 分子名称: | 2-OXOGLUTARIC ACID, CHLORIDE ION, Solute carrier family 22 member 6, ... | 著者 | Parker, J.L, Kato, T, Newstead, S. | 登録日 | 2022-12-06 | 公開日 | 2023-07-19 | 最終更新日 | 2023-11-22 | 実験手法 | ELECTRON MICROSCOPY (3.53 Å) | 主引用文献 | Molecular basis for selective uptake and elimination of organic anions in the kidney by OAT1. Nat.Struct.Mol.Biol., 30, 2023
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8BVR
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1RCH
| SOLUTION NMR STRUCTURE OF RIBONUCLEASE HI FROM ESCHERICHIA COLI, 8 STRUCTURES | 分子名称: | RIBONUCLEASE HI | 著者 | Yamazaki, T, Fujiwara, M, Kato, T, Yamasaki, K, Nagayama, K. | 登録日 | 1995-06-23 | 公開日 | 1997-02-12 | 最終更新日 | 2022-03-02 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution Structure of Ribonuclease Hi from Escherichia Coli Biol.Pharm.Bull., 23, 2000
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1V7M
| Human Thrombopoietin Functional Domain Complexed To Neutralizing Antibody TN1 Fab | 分子名称: | Monoclonal TN1 Fab Heavy Chain, Monoclonal TN1 Fab Light Chain, Thrombopoietin | 著者 | Feese, M.D, Tamada, T, Kato, Y, Maeda, Y, Hirose, M, Matsukura, Y, Shigematsu, H, Kato, T, Miyazaki, H, Kuroki, R. | 登録日 | 2003-12-18 | 公開日 | 2004-03-02 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.51 Å) | 主引用文献 | Structure of the receptor-binding domain of human thrombopoietin determined by complexation with a neutralizing antibody fragment Proc.Natl.Acad.Sci.USA, 101, 2004
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1V7N
| Human Thrombopoietin Functional Domain Complexed To Neutralizing Antibody TN1 Fab | 分子名称: | Monoclonal TN1 Fab Heavy Chain, Monoclonal TN1 Fab Light Chain, Thrombopoietin | 著者 | Feese, M.D, Tamada, T, Kato, Y, Maeda, Y, Hirose, M, Matsukura, Y, Shigematsu, H, Kato, T, Miyazaki, H, Kuroki, R. | 登録日 | 2003-12-18 | 公開日 | 2004-03-02 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (3.3 Å) | 主引用文献 | Structure of the receptor-binding domain of human thrombopoietin determined by complexation with a neutralizing antibody fragment Proc.Natl.Acad.Sci.USA, 101, 2004
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8GQY
| CryoEM structure of pentameric MotA from Aquifex aeolicus | 分子名称: | Motility protein A | 著者 | Nishikino, T, Takekawa, N, Kishikawa, J, Hirose, M, Onoe, S, Kato, T, Imada, K. | 登録日 | 2022-08-31 | 公開日 | 2022-10-26 | 最終更新日 | 2022-11-09 | 実験手法 | ELECTRON MICROSCOPY (3.4 Å) | 主引用文献 | Structure of MotA, a flagellar stator protein, from hyperthermophile. Biochem.Biophys.Res.Commun., 631, 2022
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8HIQ
| cryoEM structure of glutamate dehydrogenase from Thermococcus profundus in complex with NADP | 分子名称: | Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 著者 | Wakabayashi, T, Oide, M, Kato, T, Nakasako, M. | 登録日 | 2022-11-21 | 公開日 | 2023-02-08 | 最終更新日 | 2023-12-20 | 実験手法 | ELECTRON MICROSCOPY (3.2 Å) | 主引用文献 | Coenzyme-binding pathway on glutamate dehydrogenase suggested from multiple-binding sites visualized by cryo-electron microscopy. Febs J., 290, 2023
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8HJ3
| cryoEM structure of glutamate dehydrogenase from Thermococcus profundus in complex with NADP | 分子名称: | Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 著者 | Wakabayashi, T, Oide, M, Kato, T, Nakasako, M. | 登録日 | 2022-11-22 | 公開日 | 2023-02-08 | 最終更新日 | 2023-12-20 | 実験手法 | ELECTRON MICROSCOPY (3.29 Å) | 主引用文献 | Coenzyme-binding pathway on glutamate dehydrogenase suggested from multiple-binding sites visualized by cryo-electron microscopy. Febs J., 290, 2023
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8HJ9
| cryoEM structure of glutamate dehydrogenase from Thermococcus profundus in complex with NADP | 分子名称: | Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 著者 | Wakabayashi, T, Oide, M, Kato, T, Nakasako, M. | 登録日 | 2022-11-22 | 公開日 | 2023-02-08 | 最終更新日 | 2023-12-20 | 実験手法 | ELECTRON MICROSCOPY (3.12 Å) | 主引用文献 | Coenzyme-binding pathway on glutamate dehydrogenase suggested from multiple-binding sites visualized by cryo-electron microscopy. Febs J., 290, 2023
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