Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6ICF
DownloadVisualize
BU of 6icf by Molmil
The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 263 and 266
分子名称: Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ...
著者Tamura, R, Oi, R, Kaneko, M.K, Kato, Y, Nogi, T.
登録日2018-09-05
公開日2019-02-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins.
Protein Sci., 28, 2019
6ICC
DownloadVisualize
BU of 6icc by Molmil
The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 181 and 186
分子名称: Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ...
著者Tamura, R, Oi, R, Kaneko, M.K, Kato, Y, Nogi, T.
登録日2018-09-05
公開日2019-02-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins.
Protein Sci., 28, 2019
7C95
DownloadVisualize
BU of 7c95 by Molmil
Crystal structure of the anti-human podoplanin antibody Fab fragment
分子名称: GLYCEROL, Heavy chain of Fab fragment, Light chain of Fab fragment, ...
著者Nakamura, S, Suzuki, K, Ogasawara, S, Naruchi, K, Shimabukuro, J, Tukahara, N, Kaneko, M.K, Kato, Y, Murata, T.
登録日2020-06-04
公開日2020-09-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献Crystal structure of an anti-podoplanin antibody bound to a disialylated O-linked glycopeptide.
Biochem.Biophys.Res.Commun., 533, 2020
7C94
DownloadVisualize
BU of 7c94 by Molmil
Crystal structure of the anti-human podoplanin antibody Fab fragment complex with glycopeptide
分子名称: GLYCEROL, Heavy chain of Fab fragment, Light chain of Fab fragment, ...
著者Suzuki, K, Nakamura, S, Ogasawara, S, Naruchi, K, Shimabukuro, J, Tukahara, N, Kaneko, M.K, Kato, Y, Murata, T.
登録日2020-06-04
公開日2020-09-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献Crystal structure of an anti-podoplanin antibody bound to a disialylated O-linked glycopeptide.
Biochem.Biophys.Res.Commun., 533, 2020
6AL1
DownloadVisualize
BU of 6al1 by Molmil
The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 181 and 184
分子名称: Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ...
著者Tamura, R, Oi, R, Kaneko, M.K, Kato, Y, Nogi, T.
登録日2018-09-05
公開日2019-02-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins.
Protein Sci., 28, 2019
6AKQ
DownloadVisualize
BU of 6akq by Molmil
The PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 263 and 267
分子名称: PDZ tandem fragment of A. aeolicus site-2 protease homolog with the PA tag insertion
著者Tamura, R, Oi, R, Kaneko, M.K, Kato, Y, Nogi, T.
登録日2018-09-03
公開日2019-02-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins.
Protein Sci., 28, 2019
6AL0
DownloadVisualize
BU of 6al0 by Molmil
The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 263 and 267
分子名称: Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ...
著者Tamura, R, Oi, R, Kaneko, M.K, Kato, Y, Nogi, T.
登録日2018-09-05
公開日2019-02-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins.
Protein Sci., 28, 2019
6LZ4
DownloadVisualize
BU of 6lz4 by Molmil
Crystal structure of PMab-1 Fv-clasp fragment with its antigen peptide
分子名称: MAP peptide, PMab-1 VH(S112C)-SARAH Chimera, PMab-1 VL-SARAH(S37C) Chimera
著者Arimori, T, Takagi, J.
登録日2020-02-18
公開日2020-05-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Site-specific epitope insertion into recombinant proteins using the MAP tag system.
J.Biochem., 168, 2020
5GIS
DownloadVisualize
BU of 5gis by Molmil
Crystal structure of a Fab fragment with its ligand peptide
分子名称: Heavy chain of Fab fragment, Light chain of Fab fragment, SULFATE ION, ...
著者Kitago, Y, Kaneko, K.K, Ogasawara, S, Kato, Y, Takagi, J.
登録日2016-06-24
公開日2016-09-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Structural basis for multi-specific peptide recognition by the anti-IDH1/2 monoclonal antibody, MsMab-1.
Biochem. Biophys. Res. Commun., 478, 2016
5GIR
DownloadVisualize
BU of 5gir by Molmil
Crystal structure of a Fab fragment with its ligand peptide
分子名称: 1,2-ETHANEDIOL, Heavy chain of Fab fragment, LYS-PRO-ILE-ILE-ILE-GLY-SER-HIS-ALA-TYR-GLY-ASP, ...
著者Kitago, Y, Kaneko, K.K, Ogasawara, S, Kato, Y, Takagi, J.
登録日2016-06-24
公開日2016-09-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Structural basis for multi-specific peptide recognition by the anti-IDH1/2 monoclonal antibody, MsMab-1.
Biochem. Biophys. Res. Commun., 478, 2016
5X2M
DownloadVisualize
BU of 5x2m by Molmil
Crystal structure of the medaka fish taste receptor T1r2a-T1r3 ligand binding domains in complex with L-glutamine
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ...
著者Nuemket, N, Yasui, N, Atsumi, N, Yamashita, A.
登録日2017-02-02
公開日2017-05-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.206 Å)
主引用文献Structural basis for perception of diverse chemical substances by T1r taste receptors
Nat Commun, 8, 2017
4YO0
DownloadVisualize
BU of 4yo0 by Molmil
Crystal structure of monoclonal anti-human podoplanin antibody NZ-1 with bound PA peptide
分子名称: 1,2-ETHANEDIOL, Heavy chain of antigen binding fragment, Fab, ...
著者Fujii, Y, Kitago, Y, Arimori, T, Takagi, J.
登録日2015-03-11
公開日2016-03-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Tailored placement of a turn-forming PA tag into the structured domain of a protein to probe its conformational state
J.Cell.Sci., 129, 2016
4YNY
DownloadVisualize
BU of 4yny by Molmil
Crystal structure of monoclonal anti-human podoplanin antibody NZ-1
分子名称: Heavy chain of antigen binding fragment, Fab, Light chain of antigen binding fragment
著者Fujii, Y, Kitago, Y, Arimori, T, Takagi, J.
登録日2015-03-11
公開日2016-03-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.584 Å)
主引用文献Tailored placement of a turn-forming PA tag into the structured domain of a protein to probe its conformational state
J.Cell.Sci., 129, 2016
8IPC
DownloadVisualize
BU of 8ipc by Molmil
The recombinant NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA14 tag inserted between the residues 181 and 184
分子名称: Putative zinc metalloprotease aq_1964, The recombinantly-expressed heavy chain of the monoclonal antibody NZ-1, The recombinantly-expressed light chain of the monoclonal antibody NZ-1
著者Adachi, Y, Nogi, T.
登録日2023-03-14
公開日2024-01-31
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Recombinant production of antibody antigen-binding fragments with an N-terminal human growth hormone tag in mammalian cells.
Protein Expr.Purif., 208-209, 2023
8JYR
DownloadVisualize
BU of 8jyr by Molmil
Crystal structure of anti-HER2 antibody H2Mab-119 in complex with HER2 domain I
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, H2Mab-119 VH-CH1, H2Mab-119 light chain, ...
著者Arimori, T, Takagi, J.
登録日2023-07-03
公開日2024-03-13
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Locally misfolded HER2 expressed on cancer cells is a promising target for development of cancer-specific antibodies.
Structure, 2024
8JYQ
DownloadVisualize
BU of 8jyq by Molmil
Crystal structure of cancer-specific anti-HER2 antibody H2Mab-214 in complex with epitope peptide
分子名称: H2CasMab-1 VH(S112C),SARAH, H2CasMab-1 VL,SARAH(S37C), H2CasMab-1 epitope peptide
著者Arimori, T, Takagi, J.
登録日2023-07-03
公開日2024-03-13
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Locally misfolded HER2 expressed on cancer cells is a promising target for development of cancer-specific antibodies.
Structure, 2024
7CQD
DownloadVisualize
BU of 7cqd by Molmil
The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA14 tag inserted between the residues 235 and 236
分子名称: Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ...
著者Tamura-Sakaguchi, R, Aruga, R, Nogi, T.
登録日2020-08-10
公開日2021-05-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Moving toward generalizable NZ-1 labeling for 3D structure determination with optimized epitope-tag insertion.
Acta Crystallogr D Struct Biol, 77, 2021
7CQC
DownloadVisualize
BU of 7cqc by Molmil
The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA14 tag inserted between the residues 181 and 184
分子名称: Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ...
著者Aruga, R, Tamura-Sakaguchi, R, Nogi, T.
登録日2020-08-10
公開日2021-05-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Moving toward generalizable NZ-1 labeling for 3D structure determination with optimized epitope-tag insertion.
Acta Crystallogr D Struct Biol, 77, 2021
7W6Y
DownloadVisualize
BU of 7w6y by Molmil
Crystal structure of Kangiella koreensis RseP orthologue in complex with batimastat in space group P1
分子名称: 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE, Anti sigma-E protein, RseA, ...
著者Imaizumi, Y, Takanuki, K, Nogi, T.
登録日2021-12-02
公開日2022-09-07
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP.
Sci Adv, 8, 2022
7W6X
DownloadVisualize
BU of 7w6x by Molmil
Crystal structure of E. coli RseP in complex with batimastat
分子名称: 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE, Regulator of sigma-E protease RseP, ZINC ION
著者Takanuki, K, Imaizumi, Y, Nogi, T.
登録日2021-12-02
公開日2022-09-07
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP.
Sci Adv, 8, 2022
7W6Z
DownloadVisualize
BU of 7w6z by Molmil
Crystal structure of Kangiella koreensis RseP orthologue in complex with batimastat in space group P21
分子名称: 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE, ZINC ION, Zinc metalloprotease
著者Imaizumi, Y, Takanuki, K, Nogi, T.
登録日2021-12-02
公開日2022-09-07
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP.
Sci Adv, 8, 2022
7W70
DownloadVisualize
BU of 7w70 by Molmil
Crystal structure of the PDZ-C domain fragment of Kangiella koreensis RseP orthologue
分子名称: Zinc metalloprotease
著者Miyoshi, K, Nogi, T.
登録日2021-12-02
公開日2022-09-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP.
Sci Adv, 8, 2022
7W71
DownloadVisualize
BU of 7w71 by Molmil
Crystal structure of the PDZ-C domain of E. coli RseP in complex with 12C7 Fab
分子名称: Heavy chain of Fab, Light chain of Fab, Regulator of sigma-E protease RseP
著者Hirose, T, Katagiri, S, Nogi, T.
登録日2021-12-02
公開日2022-09-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP.
Sci Adv, 8, 2022
5X2P
DownloadVisualize
BU of 5x2p by Molmil
Crystal structure of the medaka fish taste receptor T1r2a-T1r3 ligand binding domains in complex with L-glutamate
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Nuemket, N, Yasui, N, Atsumi, N, Yamashita, A.
登録日2017-02-02
公開日2017-05-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.608 Å)
主引用文献Structural basis for perception of diverse chemical substances by T1r taste receptors
Nat Commun, 8, 2017
5X2N
DownloadVisualize
BU of 5x2n by Molmil
Crystal structure of the medaka fish taste receptor T1r2a-T1r3 ligand binding domains in complex with L-alanine
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ALANINE, CHLORIDE ION, ...
著者Nuemket, N, Yasui, N, Atsumi, N, Yamashita, A.
登録日2017-02-02
公開日2017-05-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for perception of diverse chemical substances by T1r taste receptors
Nat Commun, 8, 2017

 

12>

218853

件を2024-04-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon