Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2ZJ0
DownloadVisualize
BU of 2zj0 by Molmil
Crystal structure of Mycobacterium tuberculosis S-Adenosyl-L-homocysteine hydrolase in ternary complex with NAD and 2-fluoroadenosine
Descriptor: 2-(6-AMINO-2-FLUORO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL, Adenosylhomocysteinase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Reddy, M.C.M, Gokulan, K, Shetty, N.D, Owen, J.L, Ioerger, T.R, Sacchettini, J.C.
Deposit date:2008-02-29
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Crystal structures of Mycobacterium tuberculosis S-adenosyl-L-homocysteine hydrolase in ternary complex with substrate and inhibitors.
Protein Sci., 17, 2008
2ZEC
DownloadVisualize
BU of 2zec by Molmil
Potent, Nonpeptide Inhibitors of Human Mast Cell Tryptase
Descriptor: 1-[1'-(3-phenylacryloyl)spiro[1-benzofuran-3,4'-piperidin]-5-yl]methanamine, Tryptase beta 2
Authors:Spurlino, J.C, Lewandowski, F, Milligan, C.
Deposit date:2007-12-08
Release date:2008-12-09
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.059 Å)
Cite:Potent, nonpeptide inhibitors of human mast cell tryptase. Synthesis and biological evaluation of novel spirocyclic piperidine amide derivatives
Bioorg.Med.Chem.Lett., 18, 2008
2Z9I
DownloadVisualize
BU of 2z9i by Molmil
Crystal structure of RV0983 from Mycobacterium tuberculosis- Proteolytically active form
Descriptor: GATV, PROBABLE SERINE PROTEASE PEPD, SVEQV
Authors:Palaninathan, S.K, Mohamedmohaideen, N.N, Sacchettini, J.C.
Deposit date:2007-09-20
Release date:2008-06-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and function of the virulence-associated high-temperature requirement A of Mycobacterium tuberculosis
Biochemistry, 47, 2008
2ZEB
DownloadVisualize
BU of 2zeb by Molmil
Potent, Nonpeptide Inhibitors of Human Mast Cell Tryptase
Descriptor: 1-(1'-{[3-(methylsulfanyl)-2-benzothiophen-1-yl]carbonyl}spiro[1-benzofuran-3,4'-piperidin]-5-yl)methanamine, Tryptase beta 2
Authors:Spurlino, J.C, Lewandowski, F, Milligan, C.
Deposit date:2007-12-08
Release date:2008-12-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Potent, nonpeptide inhibitors of human mast cell tryptase. Synthesis and biological evaluation of novel spirocyclic piperidine amide derivatives
Bioorg.Med.Chem.Lett., 18, 2008
2ZA5
DownloadVisualize
BU of 2za5 by Molmil
Crystal Structure of human tryptase with potent non-peptide inhibitor
Descriptor: (5-(aminomethyl)-2H-spiro[benzofuran-3,4'-piperidine]-1'-yl)(5-(phenylethynyl)furan-2-yl)methanone, Tryptase beta 2
Authors:Spurlino, J.C, Barnakov, S.A, Lewandowski, F, Milligan, C.
Deposit date:2007-10-02
Release date:2008-02-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Potent, nonpeptide inhibitors of human mast cell tryptase. Synthesis and biological evaluation of novel spirocyclic piperidine amide derivatives
Bioorg.Med.Chem.Lett., 18, 2008
2ZIZ
DownloadVisualize
BU of 2ziz by Molmil
Crystal structure of Mycobacterium tuberculosis S-adenosyl-L-homocysteine hydrolase in ternary complex with NAD and 3-deazaadenosine
Descriptor: 3-DEAZA-ADENOSINE, Adenosylhomocysteinase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Reddy, M.C.M, Gokulan, K, Shetty, N.D, Owen, J.L, Ioerger, T.R, Sacchettini, J.C.
Deposit date:2008-02-29
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of Mycobacterium tuberculosis S-adenosyl-L-homocysteine hydrolase in ternary complex with substrate and inhibitors.
Protein Sci., 17, 2008
8ARL
DownloadVisualize
BU of 8arl by Molmil
Plasmodium vivax PVP01_0000100 TRAg domain
Descriptor: Tryptophan-rich antigen
Authors:Kundu, P, Deane, J.E, Rayner, J.C.
Deposit date:2022-08-17
Release date:2023-07-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The structure of a Plasmodium vivax Tryptophan Rich Antigen domain suggests a lipid binding function for a pan-Plasmodium multi-gene family.
Nat Commun, 14, 2023
7PLM
DownloadVisualize
BU of 7plm by Molmil
CryoEM reconstruction of pyruvate ferredoxin oxidoreductase (PFOR) in anaerobic conditions
Descriptor: CALCIUM ION, IRON/SULFUR CLUSTER, MAGNESIUM ION, ...
Authors:Cherrier, M.V, Vernede, X, Fenel, D, Martin, L, Arragain, B, Neumann, E, Fontecilla Camps, J.C, Schoehn, G, Nicolet, Y.
Deposit date:2021-08-31
Release date:2022-03-23
Last modified:2022-04-06
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Oxygen-Sensitive Metalloprotein Structure Determination by Cryo-Electron Microscopy.
Biomolecules, 12, 2022
8BNB
DownloadVisualize
BU of 8bnb by Molmil
Crystal structure of Trichoplax Scribble PDZ2 domain
Descriptor: Leucine-rich repeat-containing protein 1
Authors:Maddumage, J.C, Kvansakul, M.
Deposit date:2022-11-14
Release date:2023-11-29
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Crystal structure of Trichoplax Scribble PDZ2 domain
To be published
8BOJ
DownloadVisualize
BU of 8boj by Molmil
Crystal structure of Trichoplax Scribble PDZ1 domain
Descriptor: Leucine-rich repeat-containing protein 1
Authors:Maddumage, J.C, Kvansakul, M.
Deposit date:2022-11-15
Release date:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of Trichoplax Pals1 PDZ1 with Trichoplax Crumbs peptide
To be published
8BP5
DownloadVisualize
BU of 8bp5 by Molmil
Crystal structure of Trichoplax Dlg PDZ1 domain
Descriptor: Disks large-like protein 1
Authors:Maddumage, J.C, Kvansakul, M.
Deposit date:2022-11-16
Release date:2023-11-29
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal structure of Trichoplax Dlg PDZ1 domain
To be published
8BP4
DownloadVisualize
BU of 8bp4 by Molmil
Crystal structure of Trichoplax Scribble PDZ2 domain in complex with Trichoplax Vangl peptide
Descriptor: AMMONIUM ION, Leucine-rich repeat-containing protein 1, SULFATE ION, ...
Authors:Maddumage, J.C, Kvansakul, M.
Deposit date:2022-11-16
Release date:2023-11-29
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Crystal structure of Trichoplax Scribble PDZ2 domain in complex with Trichoplax Vangl peptide
To be published
8BPM
DownloadVisualize
BU of 8bpm by Molmil
Crystal structure of Trichoplax Dlg PDZ3 domain
Descriptor: Disks large-like protein 1
Authors:Maddumage, J.C, Kvansakul, M.
Deposit date:2022-11-17
Release date:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of Trichoplax Dlg PDZ3 domain
To be published
1AA6
DownloadVisualize
BU of 1aa6 by Molmil
REDUCED FORM OF FORMATE DEHYDROGENASE H FROM E. COLI
Descriptor: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, FORMATE DEHYDROGENASE H, IRON/SULFUR CLUSTER, ...
Authors:Sun, P.D, Boyington, J.C.
Deposit date:1997-01-23
Release date:1997-08-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of formate dehydrogenase H: catalysis involving Mo, molybdopterin, selenocysteine, and an Fe4S4 cluster.
Science, 275, 1997
2FRV
DownloadVisualize
BU of 2frv by Molmil
CRYSTAL STRUCTURE OF THE OXIDIZED FORM OF NI-FE HYDROGENASE
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ...
Authors:Volbeda, A, Frey, M, Fontecilla-Camps, J.C.
Deposit date:1997-06-10
Release date:1998-06-17
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Structure of the [Nife] Hydrogenase Active Site: Evidence for Biologically Uncommon Fe Ligands
J.Am.Chem.Soc., 118, 1996
8BTY
DownloadVisualize
BU of 8bty by Molmil
Structure of the active form of ScpB, the C5a-peptidase from Streptococcus agalactiae.
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, C5a peptidase, CALCIUM ION, ...
Authors:Kagawa, T.F, Cooney, J.C, Miclot, T, Cullen, R.
Deposit date:2022-11-30
Release date:2023-11-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The 1.7 angstrom crystal structure of the C5a peptidase from Streptococcus agalactiae (ScpB) reveals an active site competent for catalysis.
Proteins, 92, 2024
8BQ8
DownloadVisualize
BU of 8bq8 by Molmil
Crystal structure of Trichoplax Dlg PDZ2 domain in complex with Trichoplax Vangl peptide
Descriptor: Disks large-like protein 1, Vang-like protein 1
Authors:Madduamge, J.C, Kvansakul, M.
Deposit date:2022-11-20
Release date:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of Trichoplax Dlg PDZ2 domain in complex with Trichoplax Vangl peptide
To Be Published
8C9N
DownloadVisualize
BU of 8c9n by Molmil
MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Descriptor: Penton protein
Authors:Bufton, J.C, Capin, J, Boruku, U, Garzoni, F, Schaffitzel, C, Berger, I.
Deposit date:2023-01-23
Release date:2023-12-06
Last modified:2023-12-20
Method:ELECTRON MICROSCOPY (2.36 Å)
Cite:In vitro generated antibodies guide thermostable ADDomer nanoparticle design for nasal vaccination and passive immunization against SARS-CoV-2.
Antib Ther, 6, 2023
8BUW
DownloadVisualize
BU of 8buw by Molmil
Crystal structure of Trichoplax Scribble PDZ1 domain in complex with Trichoplax Vangl peptide
Descriptor: Leucine-rich repeat-containing protein 1, Vang-like protein 1
Authors:Maddumage, J.C, Kvansakul, M.
Deposit date:2022-12-01
Release date:2023-12-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structure of Trichoplax Scribble PDZ1 domain in complex with Trichoplax Vangl peptide
To Be Published
8BV7
DownloadVisualize
BU of 8bv7 by Molmil
Crystal structure of the Trichoplax Scribble PDZ1 domain in complex with the Trichoplax phosphorylated Vangl peptide
Descriptor: Leucine-rich repeat-containing protein 1, Vang-like protein 1
Authors:Maddumage, J.C, Kvansakul, M.
Deposit date:2022-12-02
Release date:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Trichoplax Scribble PDZ1 domain in complex with Trichoplax the phosphorylated Vangl peptide
To Be Published
8C1T
DownloadVisualize
BU of 8c1t by Molmil
Crystal structure of Trichoplax Dlg PDZ1 domain in complex with Trichoplax Vangl peptide
Descriptor: Disks large-like protein 1, MALONIC ACID, Vang-like protein 1
Authors:Maddumage, J.C, Kvansakul, M.
Deposit date:2022-12-21
Release date:2024-01-10
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Trichoplax Dlg PDZ1 domain in complex with Trichoplax Vangl peptide
To be published
7R6X
DownloadVisualize
BU of 7r6x by Molmil
SARS-CoV-2 spike receptor-binding domain (RBD) in complex with S2E12 Fab, S309 Fab, and S304 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Monoclonal antibody S2E12 Fab heavy chain, ...
Authors:Snell, G, Czudnochowski, N, Croll, T.I, Nix, J.C, Corti, D, Cameroni, E, Pinto, D, Beltramello, M.
Deposit date:2021-06-23
Release date:2021-07-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:SARS-CoV-2 RBD antibodies that maximize breadth and resistance to escape.
Nature, 597, 2021
8CTQ
DownloadVisualize
BU of 8ctq by Molmil
Crystal structure of engineered phospholipase D mutant superPLD 2-48
Descriptor: PHOSPHATE ION, Phospholipase D
Authors:Tei, R, Bagde, S.R, Fromme, J.C, Baskin, J.M.
Deposit date:2022-05-16
Release date:2023-04-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Activity-based directed evolution of a membrane editor in mammalian cells.
Nat.Chem., 15, 2023
8CTP
DownloadVisualize
BU of 8ctp by Molmil
Crystal structure of engineered phospholipase D mutant superPLD 2-23
Descriptor: PHOSPHATE ION, Phospholipase D
Authors:Tei, R, Bagde, S.R, Fromme, J.C, Baskin, J.M.
Deposit date:2022-05-16
Release date:2023-04-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Activity-based directed evolution of a membrane editor in mammalian cells.
Nat.Chem., 15, 2023
8COY
DownloadVisualize
BU of 8coy by Molmil
Structure of the catalytic domain of P. vivax Sub1 (triclinic crystal form) in complex with inhibitor
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, SULFATE ION, ...
Authors:Martinez, M, Bouillon, A, Batista, F, Alzari, P.M, Barale, J.C, Haouz, A.
Deposit date:2023-03-01
Release date:2023-07-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.507 Å)
Cite:3D structures of the Plasmodium vivax subtilisin-like drug target SUB1 reveal conformational changes to accommodate a substrate-derived alpha-ketoamide inhibitor.
Acta Crystallogr D Struct Biol, 79, 2023

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon