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De Novo Design of a Protein Heterodimer with Specificity Mediated by Hydrogen Bond Networks
Descriptor:	Designed orthogonal protein DHD13_XAAA_A, Designed orthogonal protein DHD13_XAAA_B
Authors:	Chen, Z, Flores-Solis, D, Sgourakis, N.G, Baker, D.
Deposit date:	2018-06-05
Release date:	2018-12-19
Last modified:	2023-06-14
Method:	SOLUTION NMR
Cite:	Programmable design of orthogonal protein heterodimers. Nature, 565, 2019

8EOV

Precisely patterned nanofibers made from extendable protein multiplexes
Descriptor:	C2HR1_4r, PHOSPHATE ION
Authors:	Bera, A.K, Bethel, N.P.
Deposit date:	2022-10-04
Release date:	2023-08-16
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (1.59 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8EOX

Precisely patterned nanofibers made from extendable protein multiplexes
Descriptor:	C4HR1_4r
Authors:	Bera, A.K, Bethel, N.P.
Deposit date:	2022-10-04
Release date:	2023-08-16
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (3.3 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8EOZ

Precisely patterned nanofibers made from extendable protein multiplexes
Descriptor:	C3HR3_4r
Authors:	Bera, A.K, Bethel, N.P, Kang, A.
Deposit date:	2022-10-04
Release date:	2023-08-16
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8FAR

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	I432-1-CC
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-11-28
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (3.66 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8G8I

C3HR3_9r_shift4: Extendable repeat protein fiber
Descriptor:	C3HR3_9r_shift4
Authors:	Bethel, N.P, Borst, A.J.
Deposit date:	2023-02-17
Release date:	2023-08-30
Last modified:	2023-12-13
Method:	ELECTRON MICROSCOPY (3.92 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8GAA

C6HR1_4r: Extendable repeat protein hexamer
Descriptor:	C6HR1_4r
Authors:	Bethel, N.P, Borst, A.J, Baker, D.
Deposit date:	2023-02-22
Release date:	2023-08-30
Last modified:	2023-12-20
Method:	ELECTRON MICROSCOPY (4.24 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8GA9

C4HR1_4r: Extendable repeat protein tetramer
Descriptor:	C4HR1_4r
Authors:	Bethel, N.P, Borst, A.J.
Deposit date:	2023-02-22
Release date:	2023-08-30
Last modified:	2023-12-20
Method:	ELECTRON MICROSCOPY (3.71 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

8GAQ

C5HR2_4r: Extendable repeat protein pentamer
Descriptor:	C5HR2_4r
Authors:	Bethel, N.P, Borst, A.J.
Deposit date:	2023-02-23
Release date:	2023-08-30
Last modified:	2023-12-20
Method:	ELECTRON MICROSCOPY (3.73 Å)
Cite:	Precisely patterned nanofibres made from extendable protein multiplexes. Nat.Chem., 15, 2023

7UBI

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in CDCl3 with cis/trans switching (TT conformation, 47%)
Descriptor:	Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU
Authors:	Ramelot, T.A, Tejero, R, Montelione, G.T.
Deposit date:	2022-03-14
Release date:	2022-09-14
Last modified:	2022-09-28
Method:	SOLUTION NMR
Cite:	Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022

7UBC

Solution NMR structure of 9-residue Rosetta-designed cyclic peptide D9.16 in d6-DMSO with cis/trans switching
Descriptor:	Cyclic peptide D9.16 DPR-MAA-ALA-DVA-MLE-LEU-LEU-PRO-DLE
Authors:	Ramelot, T.A, Tejero, R, Monteltione, G.T.
Deposit date:	2022-03-14
Release date:	2022-09-14
Last modified:	2022-09-28
Method:	SOLUTION NMR
Cite:	Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022

7UBG

Solution NMR structure of 9-residue Rosetta-designed cyclic peptide D9.16 in CDCl3 with cis/trans switching (A-TT conformation)
Descriptor:	Cyclic peptide D9.16 DPR-MAA-ALA-DVA-MLE-LEU-LEU-PRO-DLE
Authors:	Ramelot, T.A, Tejero, R, Montelione, G.T.
Deposit date:	2022-03-14
Release date:	2022-09-14
Last modified:	2022-09-28
Method:	SOLUTION NMR
Cite:	Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022

7UBD

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.31 in d6-DMSO with cis/trans switching (A-CC conformation)
Descriptor:	Cyclic peptide D8.31 DAL-DPR-MLU-DVA-DAL-DPR-MLU-DVA
Authors:	Ramelot, T.A, Tejero, R, Montelione, G.T.
Deposit date:	2022-03-14
Release date:	2022-09-14
Last modified:	2022-09-28
Method:	SOLUTION NMR
Cite:	Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022

7UBF

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in 50% d6-DMSO and 50% water with cis/trans switching (CC conformation, 50%)
Descriptor:	Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU
Authors:	Ramelot, T.A, Tejero, R, Montelione, G.T.
Deposit date:	2022-03-14
Release date:	2022-09-14
Last modified:	2022-09-28
Method:	SOLUTION NMR
Cite:	Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022

7UBH

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.31 in CDCl3 with cis/trans switching
Descriptor:	Cyclic peptide D8.31 DAL-DPR-MLU-DVA-DAL-DPR-MLU-DVA
Authors:	Ramelot, T.A, Tejero, R, Montelione, G.T.
Deposit date:	2022-03-14
Release date:	2022-09-14
Last modified:	2022-09-28
Method:	SOLUTION NMR
Cite:	Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022

7UCP

computationally designed macrocycle
Descriptor:	computationally designed cyclic peptide D8.3.p2
Authors:	Bhardwaj, G, Baker, D, Rettie, S, Glynn, C, Sawaya, M.
Deposit date:	2022-03-17
Release date:	2022-09-14
Last modified:	2022-09-28
Method:	X-RAY DIFFRACTION (0.85 Å)
Cite:	Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022

7UBE

Solution NMR structure of 8-residue Rosetta-designed cyclic peptide D8.21 in d6-DMSO with cis/trans switching
Descriptor:	Cyclic peptide D8.21 DVA-MLE-DPR-LEU-DVA-MLE-DPR-LEU
Authors:	Ramelot, T.A, Tejero, R, Montelione, G.T.
Deposit date:	2022-03-14
Release date:	2022-09-14
Last modified:	2022-09-28
Method:	SOLUTION NMR
Cite:	Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022

7UZL

Solution NMR structure of 9-residue Rosetta-designed cyclic peptide D9.16 in CDCl3 with cis/trans switching (B-TC conformation)
Descriptor:	Cyclic peptide D9.16 DPR-MAA-ALA-DVA-MLE-LEU-LEU-PRO-DLE
Authors:	Ramelot, T.A, Tejero, R, Montelione, G.T.
Deposit date:	2022-05-09
Release date:	2022-09-14
Last modified:	2022-09-28
Method:	SOLUTION NMR
Cite:	Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022

6O0I

NMR ensemble of computationally designed protein XAA
Descriptor:	Design construct XAA
Authors:	Wei, K.Y, Moschidi, D, Nerli, S, Sgourakis, N, Baker, D.
Deposit date:	2019-02-16
Release date:	2020-04-22
Last modified:	2023-06-14
Method:	SOLUTION NMR
Cite:	Computational design of closely related proteins that adopt two well-defined but structurally divergent folds. Proc.Natl.Acad.Sci.USA, 117, 2020

6O0C

NMR ensemble of computationally designed protein XAA_GVDQ mutant M4L
Descriptor:	Design construct XAA_GVDQ mutant M4L
Authors:	Wei, K.Y, Moschidi, D, Nerli, S, Sgourakis, N, Baker, D.
Deposit date:	2019-02-15
Release date:	2020-04-22
Last modified:	2023-06-14
Method:	SOLUTION NMR
Cite:	Computational design of closely related proteins that adopt two well-defined but structurally divergent folds. Proc.Natl.Acad.Sci.USA, 117, 2020

6VFJ

De novo designed icosahedral nanoparticle I53_dn5
Descriptor:	I53_dn5A, I53_dn5B
Authors:	Antanasijevic, A, Ward, A.B.
Deposit date:	2020-01-05
Release date:	2020-08-12
Last modified:	2024-03-06
Method:	ELECTRON MICROSCOPY (5.35 Å)
Cite:	Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens. Elife, 9, 2020

6VFH

De novo designed tetrahedral nanoparticle T33_dn10
Descriptor:	T33_dn10A, T33_dn10B
Authors:	Antanasijevic, A, Ward, A.B.
Deposit date:	2020-01-05
Release date:	2020-08-12
Last modified:	2024-03-06
Method:	ELECTRON MICROSCOPY (3.86 Å)
Cite:	Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens. Elife, 9, 2020

6VFI

De novo designed octahedral nanoparticle O43_dn18
Descriptor:	O43_dn18A, O43_dn18B
Authors:	Antanasijevic, A, Ward, A.B.
Deposit date:	2020-01-05
Release date:	2020-08-12
Last modified:	2020-08-19
Method:	ELECTRON MICROSCOPY (4.54 Å)
Cite:	Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens. Elife, 9, 2020

6V8E

Computationally designed C3-symmetric homotrimer from TPR repeat protein
Descriptor:	Designed protein
Authors:	Sankaran, B, Ueda, G, Zwart, P.H, Baker, D.
Deposit date:	2019-12-10
Release date:	2020-08-12
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.53 Å)
Cite:	Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens. Elife, 9, 2020

6W3W

An enumerative algorithm for de novo design of proteins with diverse pocket structures
Descriptor:	DENOVO NTF2, NITRATE ION
Authors:	Bera, A.K, Basanta, B, Dimaio, F, Sankaran, B, Baker, D.
Deposit date:	2020-03-09
Release date:	2020-04-08
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (1.55 Å)
Cite:	An enumerative algorithm for de novo design of proteins with diverse pocket structures. Proc.Natl.Acad.Sci.USA, 117, 2020

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