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7E4U
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Crystal structure of Peroxiredoxin-1
分子名称: CALCIUM ION, GLYCEROL, Peroxiredoxin 1
著者Ahmed, S, Mok, Y.K, Jobichen, C.
登録日2021-02-15
公開日2022-02-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of Peroxiredoxin-1
To Be Published
8EX7
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Human S1P transporter Spns2 in an outward-facing partially occluded conformation (state 3)
分子名称: Sphingosine-1-phosphate transporter SPNS2
著者Ahmed, S, Zhao, H, Dai, Y, Lee, C.H.
登録日2022-10-24
公開日2023-05-31
最終更新日2023-06-28
実験手法ELECTRON MICROSCOPY (3.53 Å)
主引用文献Structural and functional insights into Spns2-mediated transport of sphingosine-1-phosphate.
Cell, 186, 2023
8EX8
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Human S1P transporter Spns2 in an outward-facing partially occluded conformation (state 2)
分子名称: Sphingosine-1-phosphate transporter SPNS2
著者Ahmed, S, Zhao, H, Dai, Y, Lee, C.H.
登録日2022-10-24
公開日2023-05-31
最終更新日2023-06-28
実験手法ELECTRON MICROSCOPY (4.17 Å)
主引用文献Structural and functional insights into Spns2-mediated transport of sphingosine-1-phosphate.
Cell, 186, 2023
8EX4
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Human S1P transporter Spns2 in an inward-facing open conformation (state 1)
分子名称: (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate, Sphingosine-1-phosphate transporter SPNS2
著者Ahmed, S, Zhao, H, Dai, Y, Lee, C.H.
登録日2022-10-24
公開日2023-05-31
最終更新日2023-06-28
実験手法ELECTRON MICROSCOPY (2.93 Å)
主引用文献Structural and functional insights into Spns2-mediated transport of sphingosine-1-phosphate.
Cell, 186, 2023
8EX5
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Human S1P transporter Spns2 in an outward-facing open conformation (state 4)
分子名称: Sphingosine-1-phosphate transporter SPNS2
著者Ahmed, S, Zhao, H, Dai, Y, Lee, C.H.
登録日2022-10-24
公開日2023-05-31
最終更新日2023-06-28
実験手法ELECTRON MICROSCOPY (3.47 Å)
主引用文献Structural and functional insights into Spns2-mediated transport of sphingosine-1-phosphate.
Cell, 186, 2023
8EX6
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Human S1P transporter Spns2 in an inward-facing open conformation (state 1*)
分子名称: (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate, Sphingosine-1-phosphate transporter SPNS2
著者Ahmed, S, Zhao, H, Dai, Y, Lee, C.H.
登録日2022-10-24
公開日2023-05-31
最終更新日2023-06-28
実験手法ELECTRON MICROSCOPY (3.54 Å)
主引用文献Structural and functional insights into Spns2-mediated transport of sphingosine-1-phosphate.
Cell, 186, 2023
8VKK
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Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者Zhu, X, Mannar, D, Saville, J, Poloni, C, Bezeruk, A, Tidey, K, Ahmed, S, Tuttle, K, Vahdatihassani, F, Cholak, S, Cook, L, Steiner, T.S, Subramaniam, S.
登録日2024-01-09
公開日2024-02-14
実験手法ELECTRON MICROSCOPY (2.81 Å)
主引用文献SARS-CoV-2 XBB.1.5 Spike Protein: Altered Receptor Binding, Antibody Evasion, and Retention of T Cell Recognition
To Be Published
8VKP
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Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with human ACE2 (focused refinement of RBD and ACE2)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
著者Zhu, X, Mannar, D, Saville, J, Poloni, C, Bezeruk, A, Tidey, K, Ahmed, S, Tuttle, K, Vahdatihassani, F, Cholak, S, Cook, L, Steiner, T.S, Subramaniam, S.
登録日2024-01-09
公開日2024-02-14
実験手法ELECTRON MICROSCOPY (2.77 Å)
主引用文献SARS-CoV-2 XBB.1.5 Spike Protein: Altered Receptor Binding, Antibody Evasion, and Retention of T Cell Recognition
To Be Published
8VKO
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Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with human ACE2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
著者Zhu, X, Mannar, D, Saville, J, Poloni, C, Bezeruk, A, Tidey, K, Ahmed, S, Tuttle, K, Vahdatihassani, F, Cholak, S, Cook, L, Steiner, T.S, Subramaniam, S.
登録日2024-01-09
公開日2024-02-14
実験手法ELECTRON MICROSCOPY (2.68 Å)
主引用文献SARS-CoV-2 XBB.1.5 Spike Protein: Altered Receptor Binding, Antibody Evasion, and Retention of T Cell Recognition
To Be Published
8VKN
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Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with mouse ACE2 (focused refinement of RBD and mouse ACE2)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
著者Zhu, X, Mannar, D, Saville, J, Poloni, C, Bezeruk, A, Tidey, K, Ahmed, S, Tuttle, K, Vahdatihassani, F, Cholak, S, Cook, L, Steiner, T.S, Subramaniam, S.
登録日2024-01-09
公開日2024-02-14
実験手法ELECTRON MICROSCOPY (2.93 Å)
主引用文献SARS-CoV-2 XBB.1.5 Spike Protein: Altered Receptor Binding, Antibody Evasion, and Retention of T Cell Recognition
To Be Published
8VKL
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Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with mouse ACE2 (conformation 2)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
著者Zhu, X, Mannar, D, Saville, J, Poloni, C, Bezeruk, A, Tidey, K, Ahmed, S, Tuttle, K, Vahdatihassani, F, Cholak, S, Cook, L, Steiner, T.S, Subramaniam, S.
登録日2024-01-09
公開日2024-02-14
実験手法ELECTRON MICROSCOPY (2.91 Å)
主引用文献SARS-CoV-2 XBB.1.5 Spike Protein: Altered Receptor Binding, Antibody Evasion, and Retention of T Cell Recognition
To Be Published
8VKM
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Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with mouse ACE2 (conformation 1)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
著者Zhu, X, Mannar, D, Saville, J, Poloni, C, Bezeruk, A, Tidey, K, Ahmed, S, Tuttle, K, Vahdatihassani, F, Cholak, S, Cook, L, Steiner, T.S, Subramaniam, S.
登録日2024-01-09
公開日2024-02-14
実験手法ELECTRON MICROSCOPY (2.83 Å)
主引用文献SARS-CoV-2 XBB.1.5 Spike Protein: Altered Receptor Binding, Antibody Evasion, and Retention of T Cell Recognition
To Be Published
5A8C
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The ultra high resolution structure of a novel alpha-L-arabinofuranosidase (CtGH43) from Clostridium thermocellum ATCC 27405 with bound trimethyl N-Oxide (TRS)
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, CARBOHYDRATE BINDING FAMILY 6
著者Goyal, A, Ahmed, S, Sharma, K, Fontes, C.M.G.A, Najmudin, S.
登録日2015-07-14
公開日2016-07-27
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (0.97 Å)
主引用文献Molecular determinants of substrate specificity revealed by the structure of Clostridium thermocellum arabinofuranosidase 43A from glycosyl hydrolase family 43 subfamily 16.
Acta Crystallogr D Struct Biol, 72, 2016
5A8D
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The high resolution structure of a novel alpha-L-arabinofuranosidase (CtGH43) from Clostridium thermocellum ATCC 27405
分子名称: ACETATE ION, CARBOHYDRATE BINDING FAMILY 6, GLYCEROL, ...
著者Goyal, A, Ahmed, S, Sharma, K, Fontes, C.M.G.A, Najmudin, S.
登録日2015-07-14
公開日2016-07-27
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Molecular determinants of substrate specificity revealed by the structure of Clostridium thermocellum arabinofuranosidase 43A from glycosyl hydrolase family 43 subfamily 16.
Acta Crystallogr D Struct Biol, 72, 2016
2XTB
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Crystal Structure of Trypanosoma brucei rhodesiense Adenosine Kinase Complexed with Activator
分子名称: 4-[5-(4-PHENOXYPHENYL)-1H-PYRAZOL-3-YL]MORPHOLINE, ADENOSINE KINASE
著者Kuettel, S, Greenwald, J, Kostrewa, D, Ahmed, S, Scapozza, L, Perozzo, R.
登録日2010-10-05
公開日2011-06-29
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structures of T. B. Rhodesiense Adenosine Kinase Complexed with Inhibitor and Activator: Implications for Catalysis and Hyperactivation.
Plos Negl Trop Dis, 5, 2011
2M02
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3D structure of cap-gly domain of mammalian dynactin determined by magic angle spinning NMR spectroscopy
分子名称: Dynactin subunit 1
著者Yan, S, Hou, G, Schwieters, C.D, Ahmed, S, Williams, J.C, Polenova, T.
登録日2012-10-15
公開日2013-05-08
最終更新日2023-06-14
実験手法SOLID-STATE NMR
主引用文献Three-Dimensional Structure of CAP-Gly Domain of Mammalian Dynactin Determined by Magic Angle Spinning NMR Spectroscopy: Conformational Plasticity and Interactions with End-Binding Protein EB1.
J.Mol.Biol., 425, 2013
3OTX
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Crystal Structure of Trypanosoma brucei rhodesiense Adenosine Kinase Complexed with Inhibitor AP5A
分子名称: Adenosine kinase, putative, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, ...
著者Kuettel, S, Greenwald, J, Kostrewa, D, Ahmed, S, Scapozza, L, Perozzo, R.
登録日2010-09-14
公開日2011-06-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal Structures of T. b. rhodesiense Adenosine Kinase Complexed with Inhibitor and Activator: Implications for Catalysis and Hyperactivation
Plos Negl Trop Dis, 5, 2011
2OP7
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WW4
分子名称: NEDD4-like E3 ubiquitin-protein ligase WWP1
著者Qin, H.N, Li, M.F, Pu, H, Sankaran, S, Ahmed, S, Song, J.X.
登録日2007-01-27
公開日2007-12-11
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献NMR structure of the forth WW domain of WWP1
To be Published
5V18
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Structure of PHD2 in complex with 1,2,4-Triazolo-[1,5-a]pyridine
分子名称: 4-([1,2,4]triazolo[1,5-a]pyridin-5-yl)benzonitrile, Egl nine homolog 1, FE (II) ION, ...
著者Skene, R.J.
登録日2017-03-01
公開日2017-06-21
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献1,2,4-Triazolo-[1,5-a]pyridine HIF Prolylhydroxylase Domain-1 (PHD-1) Inhibitors With a Novel Monodentate Binding Interaction.
J. Med. Chem., 60, 2017
5V1B
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Structure of PHD1 in complex with 1,2,4-Triazolo-[1,5-a]pyridine
分子名称: 4-([1,2,4]triazolo[1,5-a]pyridin-5-yl)benzonitrile, Egl nine homolog 2, FE (III) ION, ...
著者Skene, R.J.
登録日2017-03-01
公開日2017-06-21
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献1,2,4-Triazolo-[1,5-a]pyridine HIF Prolylhydroxylase Domain-1 (PHD-1) Inhibitors With a Novel Monodentate Binding Interaction.
J. Med. Chem., 60, 2017
7WVL
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Structure of P4A2 Fab in complex with Spike-RBD from SARS-CoV-2
分子名称: P4A2 Fab Light Chain, P4A2 Fab heavy chain, Spike protein S1
著者Narayanan, N, Nair, D.T.
登録日2022-02-10
公開日2022-12-07
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献A broadly neutralizing monoclonal antibody overcomes the mutational landscape of emerging SARS-CoV-2 variants of concern.
Plos Pathog., 18, 2022
1TTQ
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TRYPTOPHAN SYNTHASE (E.C.4.2.1.20) IN THE PRESENCE OF POTASSIUM AT ROOM TEMPERATURE
分子名称: POTASSIUM ION, PYRIDOXAL-5'-PHOSPHATE, TRYPTOPHAN SYNTHASE
著者Rhee, S, Parris, K, Ahmed, S, Miles, E.W, Davies, D.R.
登録日1995-10-11
公開日1996-03-08
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Exchange of K+ or Cs+ for Na+ induces local and long-range changes in the three-dimensional structure of the tryptophan synthase alpha2beta2 complex.
Biochemistry, 35, 1996
1TTP
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TRYPTOPHAN SYNTHASE (E.C.4.2.1.20) IN THE PRESENCE OF CESIUM, ROOM TEMPERATURE
分子名称: CESIUM ION, PYRIDOXAL-5'-PHOSPHATE, TRYPTOPHAN SYNTHASE
著者Rhee, S, Parris, K, Ahmed, S, Miles, E.W, Davies, D.R.
登録日1995-10-11
公開日1996-03-08
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Exchange of K+ or Cs+ for Na+ induces local and long-range changes in the three-dimensional structure of the tryptophan synthase alpha2beta2 complex.
Biochemistry, 35, 1996
3B7M
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Crystal structure of a meso-active thermo-stable cellulase (MT Cel12A) derived by making non-contiguous mutations in the active surface of the Cel12A cellulase of Rhodothermus marinus
分子名称: CELLULASE
著者Karthikeyan, S, Guptasarma, P.
登録日2007-10-31
公開日2007-11-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Transplantation of the active surface of a mesophile cellulase onto the structural scaffold of a homologous thermophile cellulase through engineering of a surface beta sheet
To be Published
7Y58
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CryoEM structure of QacA (D411N), an antibacterial efflux transporter from Staphylococcus aureus
分子名称: Antiseptic resistance protein, Single-domain Indian camelid antibody (A4), single-domain indian camelid antibody(B7)
著者Penmatsa, A, Majumder, P.
登録日2022-06-16
公開日2023-07-12
最終更新日2023-11-22
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Cryo-EM structure of antibacterial efflux transporter QacA from Staphylococcus aureus reveals a novel extracellular loop with allosteric role.
Embo J., 42, 2023

 

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