Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1ZNV
DownloadVisualize
BU of 1znv by Molmil
How a His-metal finger endonuclease ColE7 binds and cleaves DNA with a transition metal ion cofactor
Descriptor: Colicin E7, Colicin E7 immunity protein, NICKEL (II) ION, ...
Authors:Doudeva, L.G, Huang, H, Hsia, K.C, Shi, Z, Li, C.L, Shen, Y, Yuan, H.S.
Deposit date:2005-05-12
Release date:2006-03-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structural analysis and metal-dependent stability and activity studies of the ColE7 endonuclease domain in complex with DNA/Zn2+ or inhibitor/Ni2+
Protein Sci., 15, 2006
2AXC
DownloadVisualize
BU of 2axc by Molmil
Crystal structure of ColE7 translocation domain
Descriptor: Colicin E7, GLYCEROL, SULFATE ION
Authors:Cheng, Y.S, Shi, Z, Doudeva, L.G, Yang, W.Z, Chak, K.F, Yuan, H.S.
Deposit date:2005-09-04
Release date:2006-03-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:High-resolution crystal structure of a truncated ColE7 translocation domain: implications for colicin transport across membranes
J.Mol.Biol., 356, 2006
4Y00
DownloadVisualize
BU of 4y00 by Molmil
Crystal Structure of Human TDP-43 RRM1 Domain with D169G Mutation in Complex with an Unmodified Single-stranded DNA
Descriptor: DNA (5'-D(P*TP*TP*GP*AP*GP*CP*GP*T)-3'), TAR DNA-binding protein 43
Authors:Chiang, C.H, Kuo, P.H, Yang, W.Z, Yuan, H.S.
Deposit date:2015-02-05
Release date:2016-02-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural analysis of disease-related TDP-43 D169G mutation: linking enhanced stability and caspase cleavage efficiency to protein accumulation
Sci Rep, 6, 2016
4Y0F
DownloadVisualize
BU of 4y0f by Molmil
Crystal Structure of Human TDP-43 RRM1 Domain in Complex with an Unmodified Single-stranded DNA
Descriptor: DNA (5'-D(*GP*TP*TP*GP*AP*GP*CP*GP*TP*T)-3'), TAR DNA-binding protein 43
Authors:Chiang, C.H, Kuo, P.H, Doudeva, L.G, Wang, Y.T, Yuan, H.S.
Deposit date:2015-02-06
Release date:2016-02-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.648 Å)
Cite:Structural analysis of disease-related TDP-43 D169G mutation: linking enhanced stability and caspase cleavage efficiency to protein accumulation
Sci Rep, 6, 2016
3V9W
DownloadVisualize
BU of 3v9w by Molmil
Crystal structure of RNase T in complex with a preferred ssDNA (TTA) with two Mg in the active site
Descriptor: COBALT (II) ION, DNA (5'-D(*GP*CP*TP*TP*A)-3'), MAGNESIUM ION, ...
Authors:Hsiao, Y.-Y, Yuan, H.S.
Deposit date:2011-12-28
Release date:2012-07-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes
Nucleic Acids Res., 40, 2012
3V9Z
DownloadVisualize
BU of 3v9z by Molmil
Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site
Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*CP*C)-3'), MAGNESIUM ION, ...
Authors:Hsiao, Y.-Y, Yuan, H.S.
Deposit date:2011-12-28
Release date:2012-07-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes
Nucleic Acids Res., 40, 2012
3V9S
DownloadVisualize
BU of 3v9s by Molmil
Crystal structure of RNase T in complex with a product ssDNA (AAC) with one Mg in the active site
Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*C)-3'), MAGNESIUM ION, ...
Authors:Hsiao, Y.-Y, Yuan, H.S.
Deposit date:2011-12-28
Release date:2012-07-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes
Nucleic Acids Res., 40, 2012
3V9U
DownloadVisualize
BU of 3v9u by Molmil
Crystal structure of RNase T in complex with a preferred ssDNA (AAT) with two Mg in the active site
Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*T)-3'), MAGNESIUM ION, ...
Authors:Hsiao, Y.-Y, Yuan, H.S.
Deposit date:2011-12-28
Release date:2012-07-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.298 Å)
Cite:How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes
Nucleic Acids Res., 40, 2012
3VA3
DownloadVisualize
BU of 3va3 by Molmil
Crystal structure of RNase T in complex with a duplex DNA product (stem loop DNA with 2 nucleotide 3' overhang)
Descriptor: COBALT (II) ION, DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), Ribonuclease T
Authors:Hsiao, Y.-Y, Yuan, H.S.
Deposit date:2011-12-28
Release date:2012-07-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.714 Å)
Cite:How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes
Nucleic Acids Res., 40, 2012
3V9X
DownloadVisualize
BU of 3v9x by Molmil
Crystal structure of RNase T in complex with a preferred ssDNA (AAA) with two Mg in the active site
Descriptor: DNA (5'-D(*TP*TP*AP*TP*AP*AP*A)-3'), MAGNESIUM ION, Ribonuclease T
Authors:Hsiao, Y.-Y, Yuan, H.S.
Deposit date:2011-12-28
Release date:2012-07-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes
Nucleic Acids Res., 40, 2012
3VA0
DownloadVisualize
BU of 3va0 by Molmil
Crystal structure of RNase T in complex with a di-nucleotide product (GG) with one Mg in the active site
Descriptor: COBALT (II) ION, DNA (5'-D(*GP*G)-3'), MAGNESIUM ION, ...
Authors:Hsiao, Y.-Y, Yuan, H.S.
Deposit date:2011-12-28
Release date:2012-07-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.201 Å)
Cite:How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes
Nucleic Acids Res., 40, 2012
3FBD
DownloadVisualize
BU of 3fbd by Molmil
Crystal structure of the nuclease domain of COLE7(D493Q mutant) in complex with an 18-BP duplex DNA
Descriptor: 5'-D(*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DGP*DAP*DTP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*DC)-3', Colicin-E7
Authors:Wang, Y.T, Doudeva, L.G, Yuan, H.S.
Deposit date:2008-11-19
Release date:2009-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Redesign of high-affinity nonspecific nucleases with altered sequence preference
To be Published
3HKM
DownloadVisualize
BU of 3hkm by Molmil
Crystal Structure of rice(Oryza sativa) Rrp46
Descriptor: Os03g0854200 protein
Authors:Yang, C.-C, Wang, Y.-T, Hsiao, Y.-Y, Doudeva, L.G, Yuan, H.S.
Deposit date:2009-05-25
Release date:2010-01-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9845 Å)
Cite:Structural and biochemical characterization of CRN-5 and Rrp46: an exosome component participating in apoptotic DNA degradation
Rna, 16, 2010
3TAT
DownloadVisualize
BU of 3tat by Molmil
TYROSINE AMINOTRANSFERASE FROM E. COLI
Descriptor: PYRIDOXAL-5'-PHOSPHATE, TYROSINE AMINOTRANSFERASE
Authors:Ko, T.P, Yang, W.Z, Wu, S.P, Tsai, H, Yuan, H.S.
Deposit date:1998-08-12
Release date:1999-08-12
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystallization and preliminary crystallographic analysis of the Escherichia coli tyrosine aminotransferase.
Acta Crystallogr.,Sect.D, 55, 1999
3U1K
DownloadVisualize
BU of 3u1k by Molmil
Crystal structure of human PNPase
Descriptor: CITRIC ACID, Polyribonucleotide nucleotidyltransferase 1, mitochondrial
Authors:Lin, C.L, Yuan, H.S.
Deposit date:2011-09-30
Release date:2012-02-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal structure of human polynucleotide phosphorylase: insights into its domain function in RNA binding and degradation
Nucleic Acids Res., 40, 2012
5GKP
DownloadVisualize
BU of 5gkp by Molmil
Crystal structure of the EndoG worm homologue CPS-6 H148A/F122A in complex with DNA
Descriptor: DNA (5'-D(*TP*TP*TP*TP*T)-3'), Endonuclease G, mitochondrial, ...
Authors:Lin, J.L, Yuan, H.S.
Deposit date:2016-07-05
Release date:2016-11-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of endonuclease G in complex with DNA reveals how it nonspecifically degrades DNA as a homodimer.
Nucleic Acids Res., 44, 2016
1ETQ
DownloadVisualize
BU of 1etq by Molmil
THE CRYSTAL STRUCTURE OF E. COLI FIS MUTANT R71Y
Descriptor: FACTOR FOR INVERSION STIMULATION
Authors:Cheng, Y.S, Yang, W.Z, Johnson, R.C, Yuan, H.S.
Deposit date:2000-04-13
Release date:2000-10-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural analysis of the transcriptional activation on Fis: crystal structures of six Fis mutants with different activation properties.
J.Mol.Biol., 302, 2000
1ETV
DownloadVisualize
BU of 1etv by Molmil
THE CRYSTAL STRUCTURE OF E. COLI FIS MUTANT G72A
Descriptor: FACTOR FOR INVERSION STIMULATION
Authors:Cheng, Y.S, Yang, W.Z, Johnson, R.C, Yuan, H.S.
Deposit date:2000-04-13
Release date:2000-10-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural analysis of the transcriptional activation on Fis: crystal structures of six Fis mutants with different activation properties.
J.Mol.Biol., 302, 2000
1ETW
DownloadVisualize
BU of 1etw by Molmil
THE CRYSTAL STRUCTURE OF E. COLI FIS MUTANT G72D
Descriptor: FACTOR FOR INVERSION STIMULATION
Authors:Cheng, Y.S, Yang, W.Z, Johnson, R.C, Yuan, H.S.
Deposit date:2000-04-13
Release date:2000-10-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural analysis of the transcriptional activation on Fis: crystal structures of six Fis mutants with different activation properties.
J.Mol.Biol., 302, 2000
1F36
DownloadVisualize
BU of 1f36 by Molmil
THE CRYSTAL STRUCTURE OF FIS MUTANT K36E REVEALS THAT THE TRANSACTIVATION REGION OF THE FIS PROTEIN CONTAINS EXTENDED MOBILE BETA-HAIRPIN ARMS
Descriptor: FIS
Authors:Safo, M.K, Yuan, H.S.
Deposit date:1997-06-20
Release date:1997-12-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:The transactivation region of the fis protein that controls site-specific DNA inversion contains extended mobile beta-hairpin arms.
EMBO J., 16, 1997
4P5U
DownloadVisualize
BU of 4p5u by Molmil
Crystal structure of TatD
Descriptor: Tat-linked quality control protein TatD
Authors:Chen, Y, Li, C.-L, Hsiao, Y.-Y, Duh, Y, Yuan, H.S.
Deposit date:2014-03-20
Release date:2014-08-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and function of TatD exonuclease in DNA repair.
Nucleic Acids Res., 42, 2014
4PE8
DownloadVisualize
BU of 4pe8 by Molmil
Crystal structure of TatD in complex with trinucleotide DNA
Descriptor: DNA (5'-D(*GP*CP*T)-3'), Tat-linked quality control protein TatD
Authors:Chen, Y, Li, C.-L, Hsiao, Y.-Y, Duh, Y, Yuan, H.S.
Deposit date:2014-04-23
Release date:2014-08-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.894 Å)
Cite:Structure and function of TatD exonuclease in DNA repair.
Nucleic Acids Res., 42, 2014
7CEI
DownloadVisualize
BU of 7cei by Molmil
THE ENDONUCLEASE DOMAIN OF COLICIN E7 IN COMPLEX WITH ITS INHIBITOR IM7 PROTEIN
Descriptor: PROTEIN (COLICIN E7 IMMUNITY PROTEIN), ZINC ION
Authors:Ko, T.P, Liao, C.C, Ku, W.Y, Chak, K.F, Yuan, H.S.
Deposit date:1998-09-17
Release date:1999-09-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of the DNase domain of colicin E7 in complex with its inhibitor Im7 protein.
Structure Fold.Des., 7, 1999
4IUF
DownloadVisualize
BU of 4iuf by Molmil
Crystal Structure of Human TDP-43 RRM1 Domain in Complex with a Single-stranded DNA
Descriptor: 5'-D(*GP*TP*TP*GP*(XUA)P*GP*CP*GP*T)-3', TAR DNA-binding protein 43
Authors:Kuo, P.H, Doudeva, L.G, Wang, Y.T, Yang, W.Z, Yuan, H.S.
Deposit date:2013-01-21
Release date:2014-01-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.752 Å)
Cite:The crystal structure of TDP-43 RRM1-DNA complex reveals the specific recognition for UG- and TG-rich nucleic acids.
Nucleic Acids Res., 42, 2014
4KAZ
DownloadVisualize
BU of 4kaz by Molmil
Crystal structure of RNase T in complex with a Y structured DNA
Descriptor: DNA (5'-D(*TP*TP*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*CP*C)-3'), MAGNESIUM ION, Ribonuclease T
Authors:Hsiao, Y.-Y, Yuan, H.S.
Deposit date:2013-04-23
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways.
Plos Biol., 12, 2014

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon