Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8YLA
DownloadVisualize
BU of 8yla by Molmil
Crystal structures of terpene synthases complexed with a substrate mimic
分子名称: MAGNESIUM ION, N-benzyl-N,N-diethylethanaminium, PYROPHOSPHATE, ...
著者Xu, M, Ma, M.
登録日2024-03-05
公開日2024-04-24
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structural Insights into the Terpene Cyclization Domains of Two Fungal Sesterterpene Synthases and Enzymatic Engineering for Sesterterpene Diversification.
Angew.Chem.Int.Ed.Engl., 2024
5ID6
DownloadVisualize
BU of 5id6 by Molmil
Structure of Cpf1/RNA Complex
分子名称: Cpf1, MAGNESIUM ION, RNA (5'-R(P*AP*AP*UP*UP*UP*CP*UP*AP*CP*UP*AP*AP*GP*UP*GP*UP*AP*GP*AP*UP*C)-3')
著者Dong, D, Ren, K, Qiu, X, Wang, J, Huang, Z.
登録日2016-02-24
公開日2016-04-27
最終更新日2016-05-11
実験手法X-RAY DIFFRACTION (2.382 Å)
主引用文献The crystal structure of Cpf1 in complex with CRISPR RNA
Nature, 532, 2016
4WRQ
DownloadVisualize
BU of 4wrq by Molmil
Crystal Structure of 14-3-3 zeta with Chibby peptide
分子名称: 14-3-3 protein zeta/delta, Chibby
著者Killoran, R.C, Shilton, B.H, Choy, W.Y.
登録日2014-10-24
公開日2015-05-06
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.409 Å)
主引用文献Structural Analysis of the 14-3-3 zeta /Chibby Interaction Involved in Wnt/ beta-Catenin Signaling.
Plos One, 10, 2015
6M19
DownloadVisualize
BU of 6m19 by Molmil
Template lasso peptide C24 mutant W14F
分子名称: lasso peptide
著者Liu, X.H, Liu, T, Ma, X.J, Yu, J.H, Yang, D.H, Ma, M.
登録日2020-02-25
公開日2021-03-03
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Rational generation of lasso peptides based on biosynthetic gene mutations and site-selective chemical modifications.
Chem Sci, 12, 2021
6J1U
DownloadVisualize
BU of 6j1u by Molmil
influenza virus nucleoprotein with a specific inhibitor
分子名称: Nucleoprotein, ~{N}-[4-[(4-~{tert}-butylphenyl)carbonylamino]phenyl]-2,3-dihydro-1,4-benzodioxine-6-carboxamide
著者Pang, B, Zhang, W.Z, Zhang, H.M, Hao, Q.
登録日2018-12-29
公開日2020-01-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Discovery of a Novel Specific Inhibitor Targeting Influenza A Virus Nucleoprotein with Pleiotropic Inhibitory Effects on Various Steps of the Viral Life Cycle.
J.Virol., 95, 2021
5IWL
DownloadVisualize
BU of 5iwl by Molmil
CD47-diabody complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5F9 diabody, Leukocyte surface antigen CD47, ...
著者Di, W, Jude, K.M, Garcia, K.C.
登録日2016-03-22
公開日2016-06-29
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献CD47-blocking immunotherapies stimulate macrophage-mediated destruction of small-cell lung cancer.
J.Clin.Invest., 126, 2016
6XJJ
DownloadVisualize
BU of 6xjj by Molmil
Structure of non-heme iron enzyme TropC: Radical tropolone biosynthesis
分子名称: 2-oxoglutarate-dependent dioxygenase tropC, ACETATE ION, FE (III) ION, ...
著者Mallik, L, Doyon, T.J, Narayan, A.R.H, Koutmos, M.
登録日2020-06-24
公開日2021-06-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Radical Tropolone Biosynthesis
Chemrxiv, 2020
1JK4
DownloadVisualize
BU of 1jk4 by Molmil
DES 1-6 BOVINE NEUROPHYSIN II COMPLEX WITH VASOPRESSIN
分子名称: CADMIUM ION, Lys Vasopressin, NEUROPHYSIN 2
著者Rose, J.P, Wang, B.-C.
登録日2001-07-11
公開日2003-02-04
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structures of an Unliganded Neurophysin and its Vasopressin Complex: Implications for Binding and Allosteric Mechanisms
Protein Sci., 10, 2001
1JK6
DownloadVisualize
BU of 1jk6 by Molmil
UNCOMPLEXED DES 1-6 BOVINE NEUROPHYSIN
分子名称: NEUROPHYSIN 2
著者Rose, J.P, Wang, B.-C.
登録日2001-07-11
公開日2003-04-29
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structures of an Unliganded Neurophysin and its Vasopressin Complex: Implications for Binding and Allosteric Mechanisms
Protein Sci., 10, 2003
1ZMQ
DownloadVisualize
BU of 1zmq by Molmil
Crystal structure of human alpha-defensin-6
分子名称: CHLORIDE ION, Defensin 6
著者Lubkowski, J, Szyk, A, Lu, W.
登録日2005-05-10
公開日2006-05-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structures of human {alpha}-defensins HNP4, HD5, and HD6.
Protein Sci., 15, 2006
8GDC
DownloadVisualize
BU of 8gdc by Molmil
Cryo-EM Structure of the Prostaglandin E2 Receptor 3 Coupled to G Protein
分子名称: (Z)-7-[(1R,2R,3R)-3-hydroxy-2-[(E,3S)-3-hydroxyoct-1-enyl]-5-oxo-cyclopentyl]hept-5-enoic acid, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ...
著者Shenming, H, Mengyao, X, Lei, L, Yang, D, Shiyi, G, Jinpeng, S.
登録日2023-03-03
公開日2024-01-10
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Single hormone or synthetic agonist induces G s /G i coupling selectivity of EP receptors via distinct binding modes and propagating paths.
Proc.Natl.Acad.Sci.USA, 120, 2023
8GD9
DownloadVisualize
BU of 8gd9 by Molmil
Cryo-EM Structure of the Prostaglandin E2 Receptor 4 Coupled to G Protein
分子名称: 4-({2-[(1R,2R,3R,5S)-3,5-dihydroxy-2-{(3S)-3-hydroxy-4-[3-(methoxymethyl)phenyl]butyl}cyclopentyl]ethyl}sulfanyl)butanoic acid, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
著者Shenming, H, Mengyao, X, Lei, L, Yang, D, Sheng, C, Jinpeng, S.
登録日2023-03-03
公開日2024-01-10
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Single hormone or synthetic agonist induces G s /G i coupling selectivity of EP receptors via distinct binding modes and propagating paths.
Proc.Natl.Acad.Sci.USA, 120, 2023
6LMS
DownloadVisualize
BU of 6lms by Molmil
Solution NMR structure cold shock domain of YB1 from Homo sapiens
分子名称: Y-box-binding protein 1
著者Li, S, Zhang, J, Yang, Y.
登録日2019-12-26
公開日2020-07-22
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structural basis of DNA binding to human YB-1 cold shock domain regulated by phosphorylation.
Nucleic Acids Res., 48, 2020
5Z80
DownloadVisualize
BU of 5z80 by Molmil
Solution structure for the 1:1 complex of a platinum(II)-based tripod bound to a hybrid-1 human telomeric G-quadruplex
分子名称: 4-[1-(2,5,8-triazonia-1$l^4-platinabicyclo[3.3.0]octan-1-yl)pyridin-1-ium-4-yl]-N,N-bis[4-[1-(2,5,8-triazonia-1$l^4-platinabicyclo[3.3.0]octan-1-yl)pyridin-1-ium-4-yl]phenyl]aniline, G-quadruplex DNA (26-MER)
著者Liu, W.T, Zhong, Y.F, Liu, L.Y, Zeng, W.J, Wang, F.Y, Yang, D.Z, Mao, Z.W.
登録日2018-01-30
公開日2018-09-19
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structures of multiple G-quadruplex complexes induced by a platinum(II)-based tripod reveal dynamic binding
Nat Commun, 9, 2018
5Z8F
DownloadVisualize
BU of 5z8f by Molmil
Solution structure for the unique dimeric 4:2 complex of a platinum(II)-based tripod bound to a hybrid-1 human telomeric G-quadruplex
分子名称: 4-[1-(2,5,8-triazonia-1$l^4-platinabicyclo[3.3.0]octan-1-yl)pyridin-1-ium-4-yl]-N,N-bis[4-[1-(2,5,8-triazonia-1$l^4-platinabicyclo[3.3.0]octan-1-yl)pyridin-1-ium-4-yl]phenyl]aniline, G-quadruplex DNA (26-MER)
著者Liu, W.T, Zhong, Y.F, Liu, L.Y, Zeng, W.J, Wang, F.Y, Yang, D.Z, Mao, Z.W.
登録日2018-01-31
公開日2018-09-19
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution structures of multiple G-quadruplex complexes induced by a platinum(II)-based tripod reveal dynamic binding
Nat Commun, 9, 2018
6CCW
DownloadVisualize
BU of 6ccw by Molmil
Hybrid-2 form Human Telomeric G Quadruplex in Complex with Epiberberine
分子名称: DNA (26-MER), Epiberberine
著者Lin, C, Yang, D.Z.
登録日2018-02-07
公開日2018-06-20
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Molecular Recognition of the Hybrid-2 Human Telomeric G-Quadruplex by Epiberberine: Insights into Conversion of Telomeric G-Quadruplex Structures.
Angew. Chem. Int. Ed. Engl., 57, 2018
1NPO
DownloadVisualize
BU of 1npo by Molmil
BOVINE NEUROPHYSIN II COMPLEX WITH OXYTOCIN
分子名称: NEUROPHYSIN II, OXYTOCIN
著者Rose, J.P, Wang, B.-C.
登録日1996-02-01
公開日1997-02-12
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure of the neurophysin-oxytocin complex.
Nat.Struct.Biol., 3, 1996
5GK2
DownloadVisualize
BU of 5gk2 by Molmil
The structure of the H302A mutant of StlD
分子名称: Ketosynthase StlD
著者Mori, T, Dngfeng, Y, Morita, H, Abe, I.
登録日2016-07-03
公開日2017-07-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.201 Å)
主引用文献Structural Insight into the Enzymatic Formation of Bacterial Stilbene.
Cell Chem Biol, 23, 2016
5GK0
DownloadVisualize
BU of 5gk0 by Molmil
Crystal structure of selnomethionin-labeled ketosynthase StlD
分子名称: Ketosynthase StlD
著者Mori, T, Saito, Y, Morita, H, Abe, I.
登録日2016-07-03
公開日2017-07-05
最終更新日2019-01-16
実験手法X-RAY DIFFRACTION (2.331 Å)
主引用文献Structural Insight into the Enzymatic Formation of Bacterial Stilbene.
Cell Chem Biol, 23, 2016
5GK1
DownloadVisualize
BU of 5gk1 by Molmil
Crystal structure of the ketosynthase StlD complexed with substrate
分子名称: 3-OXO-5-METHYLHEXANOIC ACID, Ketosynthase StlD
著者Mori, T, Saito, Y, Morita, H, Abe, I.
登録日2016-07-03
公開日2017-07-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Structural Insight into the Enzymatic Formation of Bacterial Stilbene.
Cell Chem Biol, 23, 2016
8E18
DownloadVisualize
BU of 8e18 by Molmil
Crystal structure of apo TnmK1
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Secreted hydrolase
著者Liu, Y.-C, Gui, C, Shen, B.
登録日2022-08-10
公開日2022-11-09
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.14 Å)
主引用文献Intramolecular C-C Bond Formation Links Anthraquinone and Enediyne Scaffolds in Tiancimycin Biosynthesis.
J.Am.Chem.Soc., 144, 2022
8E19
DownloadVisualize
BU of 8e19 by Molmil
Crystal structure of TnmK1 complexed with TNM H
分子名称: (1R,8S,13S)-8-[(4-hydroxy-9,10-dioxo-9,10-dihydroanthracen-1-yl)amino]-12-methoxy-10-methylbicyclo[7.3.1]trideca-9,11-diene-2,6-diyne-13-carbaldehyde, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, SUCCINIC ACID, ...
著者Liu, Y.-C, Gui, C, Shen, B.
登録日2022-08-10
公開日2022-11-09
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Intramolecular C-C Bond Formation Links Anthraquinone and Enediyne Scaffolds in Tiancimycin Biosynthesis.
J.Am.Chem.Soc., 144, 2022
8FM0
DownloadVisualize
BU of 8fm0 by Molmil
HIV-1 gp120 complex with CJF-III-214
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, methyl (2R,3S)-2-(carbamimidamidomethyl)-3-[2-(4-chloro-3-fluoroanilino)(oxo)acetamido]-6-[(methylamino)methyl]-2,3-dihydro-1H-indole-1-carboxylate
著者Gong, Z, Hendrickson, W.A.
登録日2022-12-22
公開日2023-04-05
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Indoline CD4-mimetic compounds mediate potent and broad HIV-1 inhibition and sensitization to antibody-dependent cellular cytotoxicity.
Proc.Natl.Acad.Sci.USA, 120, 2023
8FM4
DownloadVisualize
BU of 8fm4 by Molmil
HIV-1 gp120 complex with CJF-IV-047
分子名称: 2,2,2-trifluoroethyl (2R,3S)-2-(carbamimidamidomethyl)-3-[2-(4-chloro-3-fluoroanilino)(oxo)acetamido]-6-[(methylamino)methyl]-2,3-dihydro-1H-indole-1-carboxylate, 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120
著者Gong, Z, Hendrickson, W.A.
登録日2022-12-22
公開日2023-04-05
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Indoline CD4-mimetic compounds mediate potent and broad HIV-1 inhibition and sensitization to antibody-dependent cellular cytotoxicity.
Proc.Natl.Acad.Sci.USA, 120, 2023
8FLZ
DownloadVisualize
BU of 8flz by Molmil
HIV-1 gp120 complex with CJF-III-049-S
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, N~1~-{(1R,2R,3S)-2-(carbamimidamidomethyl)-3-[(3S)-3,4-dihydroxybutyl]-5-[(methylamino)methyl]-2,3-dihydro-1H-inden-1-yl}-N~2~-(4-chloro-3-fluorophenyl)ethanediamide
著者Gong, Z, Hendrickson, W.A.
登録日2022-12-22
公開日2023-04-05
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Indoline CD4-mimetic compounds mediate potent and broad HIV-1 inhibition and sensitization to antibody-dependent cellular cytotoxicity.
Proc.Natl.Acad.Sci.USA, 120, 2023

219515

件を2024-05-08に公開中

PDB statisticsPDBj update infoContact PDBjnumon