Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7BSD
DownloadVisualize
BU of 7bsd by Molmil
Complex structure of 1G5.3 Fab bound to ZIKV NS1c
Descriptor: 1G5.3 Fab Heavy Chain, 1G5.3 Fab Light Chain, NS1C
Authors:Song, H, Qi, J, Gao, F.G.
Deposit date:2020-03-30
Release date:2020-12-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:A broadly protective antibody that targets the flavivirus NS1 protein.
Science, 371, 2021
7BSC
DownloadVisualize
BU of 7bsc by Molmil
Complex structure of 1G5.3 Fab bound to DENV2 NS1c
Descriptor: 1G5.3 Fab Heavy Chain, 1G5.3 Fab Light Chain, Non-structural protein 1
Authors:Song, H, Qi, J, Gao, F.G.
Deposit date:2020-03-30
Release date:2020-12-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:A broadly protective antibody that targets the flavivirus NS1 protein.
Science, 371, 2021
1LZS
DownloadVisualize
BU of 1lzs by Molmil
STRUCTURAL CHANGES OF THE ACTIVE SITE CLEFT AND DIFFERENT SACCHARIDE BINDING MODES IN HUMAN LYSOZYME CO-CRYSTALLIZED WITH HEXA-N-ACETYL-CHITOHEXAOSE AT PH 4.0
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HUMAN LYSOZYME, ...
Authors:Matsushima, M, Song, H.
Deposit date:1994-09-14
Release date:1995-04-20
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural changes of active site cleft and different saccharide binding modes in human lysozyme co-crystallized with hexa-N-acetyl-chitohexaose at pH 4.0.
J.Mol.Biol., 244, 1994
6SJ2
DownloadVisualize
BU of 6sj2 by Molmil
Amidohydrolase, AHS with 3-HAA
Descriptor: 3-HYDROXYANTHRANILIC ACID, Amidohydrolase, GLYCEROL, ...
Authors:Naismith, J.H, Song, H.
Deposit date:2019-08-12
Release date:2020-01-15
Last modified:2020-04-08
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:The Biosynthesis of the Benzoxazole in Nataxazole Proceeds via an Unstable Ester and has Synthetic Utility.
Angew.Chem.Int.Ed.Engl., 59, 2020
6SJ1
DownloadVisualize
BU of 6sj1 by Molmil
Amidohydrolase, AHS
Descriptor: Amidohydrolase, ZINC ION
Authors:Naismith, J.H, Song, H.
Deposit date:2019-08-12
Release date:2020-01-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:The Biosynthesis of the Benzoxazole in Nataxazole Proceeds via an Unstable Ester and has Synthetic Utility.
Angew.Chem.Int.Ed.Engl., 59, 2020
6SIW
DownloadVisualize
BU of 6siw by Molmil
PaaK family AMP-ligase with AMP
Descriptor: 1,2-ETHANEDIOL, 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL, ADENOSINE MONOPHOSPHATE, ...
Authors:Naismith, J.H, Song, H.
Deposit date:2019-08-12
Release date:2020-01-15
Last modified:2020-04-08
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:The Biosynthesis of the Benzoxazole in Nataxazole Proceeds via an Unstable Ester and has Synthetic Utility.
Angew.Chem.Int.Ed.Engl., 59, 2020
6SIZ
DownloadVisualize
BU of 6siz by Molmil
PaaK family AMP-ligase with ANP and substrate
Descriptor: 1,2-ETHANEDIOL, 3-HYDROXYANTHRANILIC ACID, AMP-dependent synthetase and ligase, ...
Authors:Naismith, J.H, Song, H.
Deposit date:2019-08-12
Release date:2020-01-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:The Biosynthesis of the Benzoxazole in Nataxazole Proceeds via an Unstable Ester and has Synthetic Utility.
Angew.Chem.Int.Ed.Engl., 59, 2020
5N0O
DownloadVisualize
BU of 5n0o by Molmil
Crystal structure of Seleno-OphA-DeltaC18 in complex with SAM
Descriptor: 1,2-ETHANEDIOL, L-HOMOSERINE, Peptide N-methyltransferase, ...
Authors:Naismith, J.H, Song, H.
Deposit date:2017-02-03
Release date:2018-02-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:A molecular mechanism for the enzymatic methylation of nitrogen atoms within peptide bonds.
Sci Adv, 4, 2018
6SIY
DownloadVisualize
BU of 6siy by Molmil
PaaK family AMP-ligase with AMP and substrate
Descriptor: 1,2-ETHANEDIOL, 3-HYDROXYANTHRANILIC ACID, ADENOSINE MONOPHOSPHATE, ...
Authors:Naismith, J.H, Song, H.
Deposit date:2019-08-12
Release date:2020-01-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The Biosynthesis of the Benzoxazole in Nataxazole Proceeds via an Unstable Ester and has Synthetic Utility.
Angew.Chem.Int.Ed.Engl., 59, 2020
6SJ3
DownloadVisualize
BU of 6sj3 by Molmil
Amidohydrolase, AHS with 3-HBA
Descriptor: 1,2-ETHANEDIOL, 3-HYDROXYBENZOIC ACID, Amidohydrolase, ...
Authors:Naismith, J.H, Song, H.
Deposit date:2019-08-12
Release date:2020-01-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:The Biosynthesis of the Benzoxazole in Nataxazole Proceeds via an Unstable Ester and has Synthetic Utility.
Angew.Chem.Int.Ed.Engl., 59, 2020
5N0Q
DownloadVisualize
BU of 5n0q by Molmil
Crystal structure of OphA-DeltaC6 in complex with SAH
Descriptor: Peptide N-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Naismith, J.H, Song, H.
Deposit date:2017-02-03
Release date:2018-02-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:A molecular mechanism for the enzymatic methylation of nitrogen atoms within peptide bonds.
Sci Adv, 4, 2018
6SJ0
DownloadVisualize
BU of 6sj0 by Molmil
Amidohydrolase, AHS
Descriptor: Amidohydrolase, BICARBONATE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Naismith, J.H, Song, H.
Deposit date:2019-08-12
Release date:2020-01-15
Last modified:2020-04-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The Biosynthesis of the Benzoxazole in Nataxazole Proceeds via an Unstable Ester and has Synthetic Utility.
Angew.Chem.Int.Ed.Engl., 59, 2020
6SIX
DownloadVisualize
BU of 6six by Molmil
PaaK family AMP-ligase with ANP
Descriptor: 1,2-ETHANEDIOL, AMP-dependent synthetase and ligase, CITRATE ANION, ...
Authors:Naismith, J.H, Song, H.
Deposit date:2019-08-12
Release date:2020-01-15
Last modified:2020-04-08
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:The Biosynthesis of the Benzoxazole in Nataxazole Proceeds via an Unstable Ester and has Synthetic Utility.
Angew.Chem.Int.Ed.Engl., 59, 2020
5N0P
DownloadVisualize
BU of 5n0p by Molmil
Crystal structure of OphA-DeltaC18 in complex with SAH
Descriptor: 1,2-ETHANEDIOL, S-ADENOSYL-L-HOMOCYSTEINE, peptide N-methyltranferase
Authors:Naismith, J.H, Song, H.
Deposit date:2017-02-03
Release date:2018-02-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:A molecular mechanism for the enzymatic methylation of nitrogen atoms within peptide bonds.
Sci Adv, 4, 2018
6TM4
DownloadVisualize
BU of 6tm4 by Molmil
NatL2 in complex with two molecules of salicylic acid
Descriptor: 2-HYDROXYBENZOIC ACID, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, ...
Authors:Naismith, J.H, Song, H.
Deposit date:2019-12-03
Release date:2020-01-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:The Biosynthesis of the Benzoxazole in Nataxazole Proceeds via an Unstable Ester and has Synthetic Utility.
Angew.Chem.Int.Ed.Engl., 59, 2020
1T91
DownloadVisualize
BU of 1t91 by Molmil
crystal structure of human small GTPase Rab7(GTP)
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Ras-related protein Rab-7
Authors:Song, H, Hong, W, Wu, M, Wang, T.
Deposit date:2004-05-14
Release date:2005-05-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for recruitment of RILP by small GTPase Rab7.
Embo J., 24, 2005
6K7O
DownloadVisualize
BU of 6k7o by Molmil
Complex structure of LILRB4 and h128-3 antibody
Descriptor: Leukocyte immunoglobulin-like receptor subfamily B member 4, h128-3 Fab heavy chain, h128-3 Fab light chain
Authors:Song, H, Chai, Y, Xu, X, Gao, F.G.
Deposit date:2019-06-08
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.004 Å)
Cite:Disrupting LILRB4/APOE Interaction by an Efficacious Humanized Antibody Reverses T-cell Suppression and Blocks AML Development.
Cancer Immunol Res, 7, 2019
7ZAZ
DownloadVisualize
BU of 7zaz by Molmil
macrocyclase OphP with ZPP
Descriptor: 1,2-ETHANEDIOL, BICARBONATE ION, DIMETHYL SULFOXIDE, ...
Authors:Song, H, Naismith, J.H.
Deposit date:2022-03-23
Release date:2022-07-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular basis for the enzymatic macrocyclization of multiply backbone N-methylated peptides
Biorxiv, 2022
7ZB2
DownloadVisualize
BU of 7zb2 by Molmil
apo macrocyclase OphP
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Song, H, Naismith, J.H.
Deposit date:2022-03-23
Release date:2022-07-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Molecular basis for the enzymatic macrocyclization of multiply backbone N-methylated peptides
Biorxiv, 2022
7ZB1
DownloadVisualize
BU of 7zb1 by Molmil
S580A with 18mer
Descriptor: 1,2-ETHANEDIOL, 18mer, BICARBONATE ION, ...
Authors:Song, H, Naismith, J.H.
Deposit date:2022-03-23
Release date:2022-07-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular basis for the enzymatic macrocyclization of multiply backbone N-methylated peptides
Biorxiv, 2022
7ZB0
DownloadVisualize
BU of 7zb0 by Molmil
macrocyclase OphP with 15mer
Descriptor: 1,2-ETHANEDIOL, 15mer, BICARBONATE ION, ...
Authors:Song, H, Naismith, J.H.
Deposit date:2022-03-23
Release date:2022-07-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Molecular basis for the enzymatic macrocyclization of multiply backbone N-methylated peptides
Biorxiv, 2022
2QKL
DownloadVisualize
BU of 2qkl by Molmil
The crystal structure of fission yeast mRNA decapping enzyme Dcp1-Dcp2 complex
Descriptor: LEAD (II) ION, SPAC19A8.12 protein, SPBC3B9.21 protein
Authors:She, M, Chen, N, Song, H.
Deposit date:2007-07-11
Release date:2008-03-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Structural basis of dcp2 recognition and activation by dcp1.
Mol.Cell, 29, 2008
2QKM
DownloadVisualize
BU of 2qkm by Molmil
The crystal structure of fission yeast mRNA decapping enzyme Dcp1-Dcp2 complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, SPAC19A8.12 protein, SPBC3B9.21 protein
Authors:She, M, Song, H.
Deposit date:2007-07-11
Release date:2008-04-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis of dcp2 recognition and activation by dcp1.
Mol.Cell, 29, 2008
1L9D
DownloadVisualize
BU of 1l9d by Molmil
Role of Histidine 269 in Catalysis by Monomeric Sarcosine Oxidase
Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, Monomeric sarcosine oxidase, ...
Authors:Zhao, G, Song, H, Chen, Z.-w, Mathews, F.S, Jorns, M.S.
Deposit date:2002-03-22
Release date:2002-08-30
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Monomeric sarcosine oxidase: role of histidine 269 in catalysis.
Biochemistry, 41, 2002
1LZG
DownloadVisualize
BU of 1lzg by Molmil
DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEN EGG WHITE LYSOZYME
Authors:Maenaka, K, Matsushima, M, Song, H, Watanabe, K, Kumagai, I.
Deposit date:1995-02-10
Release date:1995-05-08
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Dissection of protein-carbohydrate interactions in mutant hen egg-white lysozyme complexes and their hydrolytic activity.
J.Mol.Biol., 247, 1995

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon