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4Y9E
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BU of 4y9e by Molmil
Crystal structure of V30M mutated transthyretin in complex with gamma-mangostin
Descriptor: 1,3,6,7-tetrahydroxy-2,8-bis(3-methylbut-2-en-1-yl)-9H-xanthen-9-one, CHLORIDE ION, Transthyretin
Authors:Yokoyama, T, Mizuguchi, M.
Deposit date:2015-02-17
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Discovery of gamma-Mangostin as an Amyloidogenesis Inhibitor
Sci Rep, 5, 2015
4Y9C
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BU of 4y9c by Molmil
Crystal structure of V30M mutated transthyretin with bromide in complex with alpha-mangostin
Descriptor: 1,3,6-trihydroxy-7-methoxy-2,8-bis(3-methylbut-2-en-1-yl)-9H-xanthen-9-one, BROMIDE ION, Transthyretin
Authors:Yokoyama, T, Mizuguchi, M.
Deposit date:2015-02-17
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Discovery of gamma-Mangostin as an Amyloidogenesis Inhibitor
Sci Rep, 5, 2015
4Y9G
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BU of 4y9g by Molmil
Crystal structure of V30M mutated transthyretin in complex with 3-isomangostin
Descriptor: 5,9-dihydroxy-8-methoxy-2,2-dimethyl-7-(3-methylbut-2-en-1-yl)-3,4-dihydro-2H,6H-pyrano[3,2-b]xanthen-6-one, Transthyretin
Authors:Yokoyama, T, Mizuguchi, M.
Deposit date:2015-02-17
Release date:2015-09-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Discovery of gamma-Mangostin as an Amyloidogenesis Inhibitor
Sci Rep, 5, 2015
2JX8
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BU of 2jx8 by Molmil
Solution structure of hPCIF1 WW domain
Descriptor: Phosphorylated CTD-interacting factor 1
Authors:Kouno, T, Iwamoto, Y, Hirose, Y, Aizawa, T, Demura, M, Kawano, K, Ohkuma, Y, Mizuguchi, M.
Deposit date:2007-11-09
Release date:2008-11-11
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:1H, 13C, and 15N resonance assignments of hPCIF1 WW domain
To be Published
1WRU
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BU of 1wru by Molmil
Structure of central hub elucidated by X-ray analysis of gene product 44; baseplate component of bacteriophage Mu
Descriptor: 43 kDa tail protein
Authors:Kondou, Y, Kitazawa, D, Takeda, S, Yamashita, E, Mizuguchi, M, Kawano, K, Tsukihara, T.
Deposit date:2004-10-27
Release date:2005-09-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of central hub elucidated by X-ray analysis of gene product 44; baseplate component of bacteriophage Mu
To be Published
4N87
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BU of 4n87 by Molmil
Crystal structure of V30M mutant human transthyretin complexed with glabridin
Descriptor: 4-[(3R)-8,8-dimethyl-3,4-dihydro-2H,8H-pyrano[2,3-f]chromen-3-yl]benzene-1,3-diol, Transthyretin
Authors:Yokoyama, T, Kosaka, Y, Mizuguchi, M.
Deposit date:2013-10-17
Release date:2014-02-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.794 Å)
Cite:Crystal structures of human transthyretin complexed with glabridin
J.Med.Chem., 57, 2014
4N85
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BU of 4n85 by Molmil
Crystal structure of human transthyretin
Descriptor: CALCIUM ION, Transthyretin
Authors:Yokoyama, T, Kosaka, Y, Mizuguchi, M.
Deposit date:2013-10-17
Release date:2014-02-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of human transthyretin complexed with glabridin
J.Med.Chem., 57, 2014
4N86
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BU of 4n86 by Molmil
Crystal structure of human transthyretin complexed with glabridin
Descriptor: 4-[(3R)-8,8-dimethyl-3,4-dihydro-2H,8H-pyrano[2,3-f]chromen-3-yl]benzene-1,3-diol, CALCIUM ION, Transthyretin
Authors:Yokoyama, T, Kosaka, Y, Mizuguchi, M.
Deposit date:2013-10-17
Release date:2014-02-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Crystal structures of human transthyretin complexed with glabridin
J.Med.Chem., 57, 2014
2KOZ
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BU of 2koz by Molmil
Solution structure of nasonin-1
Descriptor: nasonin-1
Authors:Kouno, T, Tian, C, Luo, L, Zhu, S, Mizuguchi, M.
Deposit date:2009-10-04
Release date:2010-10-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of nasonin-1
To be Published
2KP0
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BU of 2kp0 by Molmil
Solution structure of nasonin-1M
Descriptor: nasonin-1M
Authors:Kouno, T, Tian, C, Luo, L, Zhu, S, Mizuguchi, M.
Deposit date:2009-10-04
Release date:2010-10-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of nasonin-1M
To be Published
1IRR
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BU of 1irr by Molmil
Solution structure of paralytic peptide of the silkworm, Bombyx mori
Descriptor: paralytic peptide
Authors:Miura, K, Kamimura, M, Aizawa, T, Kiuchi, M, Hayakawa, Y, Mizuguchi, M, Kawano, K.
Deposit date:2001-10-23
Release date:2003-02-11
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of paralytic peptide of silkworm, Bombyx mori
peptides, 23, 2002
3A5P
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BU of 3a5p by Molmil
Crystal structure of hemagglutinin
Descriptor: Haemagglutinin I
Authors:Watanabe, N, Sakai, N, Nakamura, T, Nabeshima, Y, Kouno, T, Mizuguchi, M, Kawano, K.
Deposit date:2009-08-10
Release date:2010-08-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:The Structure of Physarum polycephalum hemagglutinin I suggests a minimal carbohydrate recognition domain of legume lectin fold
J.Mol.Biol., 405, 2011
6AA4
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BU of 6aa4 by Molmil
Crystal structure of MTH1 in complex with alpha-mangostin (cocktail No. 9)
Descriptor: 1,3,6-trihydroxy-7-methoxy-2,8-bis(3-methylbut-2-en-1-yl)-9H-xanthen-9-one, 7,8-dihydro-8-oxoguanine triphosphatase, SULFATE ION, ...
Authors:Yokoyama, T, Kitakami, R, Mizuguchi, M.
Deposit date:2018-07-17
Release date:2019-03-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery of a new class of MTH1 inhibitor by X-ray crystallographic screening.
Eur J Med Chem, 167, 2019
6AA3
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BU of 6aa3 by Molmil
Crystal structure of MTH1 in apo form (cocktail No. 1)
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, SULFATE ION, ZINC ION
Authors:Yokoyama, T, Kitakami, R, Mizuguchi, M.
Deposit date:2018-07-17
Release date:2019-03-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Discovery of a new class of MTH1 inhibitor by X-ray crystallographic screening.
Eur J Med Chem, 167, 2019
6AA5
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BU of 6aa5 by Molmil
Crystal structure of MTH1 in complex with 3-isomangostin
Descriptor: 5,9-dihydroxy-8-methoxy-2,2-dimethyl-7-(3-methylbut-2-en-1-yl)-3,4-dihydro-2H,6H-pyrano[3,2-b]xanthen-6-one, 7,8-dihydro-8-oxoguanine triphosphatase, SULFATE ION, ...
Authors:Yokoyama, T, Kitakami, R, Mizuguchi, M.
Deposit date:2018-07-17
Release date:2019-03-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Discovery of a new class of MTH1 inhibitor by X-ray crystallographic screening.
Eur J Med Chem, 167, 2019
5FVL
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BU of 5fvl by Molmil
Crystal structure of Vps4-Vps20 complex from S.cerevisiae
Descriptor: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 4
Authors:Kojima, R, Obita, T, Onoue, K, Mizuguchi, M.
Deposit date:2016-02-09
Release date:2016-04-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.973 Å)
Cite:Structural Fine-Tuning of Mit Interacting Motif 2 (Mim2) and Allosteric Regulation of Escrt-III by Vps4 in Yeast.
J.Mol.Biol., 428, 2016
5FVK
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BU of 5fvk by Molmil
Crystal structure of Vps4-Vfa1 complex from S.cerevisiae at 1.66 A resolution.
Descriptor: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 4, VPS4-ASSOCIATED PROTEIN 1
Authors:Kojima, R, Obita, T, Onoue, K, Mizuguchi, M.
Deposit date:2016-02-09
Release date:2016-04-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.658 Å)
Cite:Structural Fine-Tuning of Mit Interacting Motif 2 (Mim2) and Allosteric Regulation of Escrt-III by Vps4 in Yeast.
J.Mol.Biol., 428, 2016
5H0Z
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BU of 5h0z by Molmil
Crystal structure of P113A mutated human transthyretin
Descriptor: CHLORIDE ION, SULFATE ION, Transthyretin
Authors:Yokoyama, T, Hanawa, Y, Obita, T, Mizuguchi, M.
Deposit date:2016-10-07
Release date:2017-06-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.735 Å)
Cite:Stability and crystal structures of His88 mutant human transthyretins
FEBS Lett., 591, 2017
5H0V
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BU of 5h0v by Molmil
Crystal structure of H88A mutated human transthyretin
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, MAGNESIUM ION, Transthyretin
Authors:Yokoyama, T, Hanawa, Y, Obita, T, Mizuguchi, M.
Deposit date:2016-10-07
Release date:2017-06-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Stability and crystal structures of His88 mutant human transthyretins
FEBS Lett., 591, 2017
5H0X
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BU of 5h0x by Molmil
Crystal structure of H88S mutated human transthyretin
Descriptor: Transthyretin
Authors:Yokoyama, T, Hanawa, Y, Obita, T, Mizuguchi, M.
Deposit date:2016-10-07
Release date:2017-06-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.573 Å)
Cite:Stability and crystal structures of His88 mutant human transthyretins
FEBS Lett., 591, 2017
5H0W
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BU of 5h0w by Molmil
Crystal structure of H88F mutated human transthyretin
Descriptor: SULFATE ION, Transthyretin
Authors:Yokoyama, T, Hanawa, Y, Obita, T, Mizuguchi, M.
Deposit date:2016-10-07
Release date:2017-06-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.904 Å)
Cite:Stability and crystal structures of His88 mutant human transthyretins
FEBS Lett., 591, 2017
5GPY
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BU of 5gpy by Molmil
Crystal structure of the human TFIIE complex
Descriptor: General transcription factor IIE subunit 1, Transcription initiation factor IIE subunit beta, ZINC ION
Authors:Obita, T, Miwa, K, Kojima, R, Ohkuma, Y, Tamura, Y, Mizuguchi, M.
Deposit date:2016-08-05
Release date:2016-11-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Human General Transcription Factor TFIIE at Atomic Resolution
J.Mol.Biol., 428, 2016
1V4Z
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BU of 1v4z by Molmil
Solution structure of the N-terminal fragment of S100C/A11 protein
Descriptor: Calgizzarin
Authors:Kouno, T, Mizuguchi, M, Sakaguchi, M, Makino, E, Huh, N, Kawano, K.
Deposit date:2003-11-20
Release date:2005-03-22
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Study on structure-activity relationship between the N-terminal region of S100C protein and its function
Peptide Science, 40, 2003
1V50
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BU of 1v50 by Molmil
Solution structure of phosphorylated N-terminal fragment of S100C/A11 protein
Descriptor: Calgizzarin
Authors:Kouno, T, Mizuguchi, M, Sakaguchi, M, Makino, E, Huh, N, Kawano, K.
Deposit date:2003-11-20
Release date:2005-03-22
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Study on structure-activity relationship between the N-terminal region of S100C protein and its function
Peptide Science, 40, 2003
6AAR
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BU of 6aar by Molmil
Crystal structure of DAPK1 in complex with purpurin
Descriptor: Death-associated protein kinase 1, Purpurin
Authors:Yokoyama, T, Mizuguchi, M.
Deposit date:2018-07-19
Release date:2019-07-24
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural and thermodynamic analyses of interactions between death-associated protein kinase 1 and anthraquinones.
Acta Crystallogr D Struct Biol, 76, 2020

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