2RSE
 
 | | NMR structure of FKBP12-mTOR FRB domain-rapamycin complex structure determined based on PCS | | Descriptor: | Peptidyl-prolyl cis-trans isomerase FKBP1A, Serine/threonine-protein kinase mTOR, TERBIUM(III) ION | | Authors: | Kobashigawa, Y, Ushio, M, Saio, T, Inagaki, F. | | Deposit date: | 2012-01-25 | | Release date: | 2012-05-30 | | Last modified: | 2023-06-14 | | Method: | SOLUTION NMR | | Cite: | Convenient method for resolving degeneracies due to symmetry of the magnetic susceptibility tensor and its application to pseudo contact shift-based protein-protein complex structure determination.
J.Biomol.Nmr, 53, 2012
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1UDW
 | | Crystal structure of human uridine-cytidine kinase 2 complexed with a feedback-inhibitor, CTP | | Descriptor: | CYTIDINE-5'-TRIPHOSPHATE, Uridine-cytidine kinase 2 | | Authors: | Suzuki, N.N, Koizumi, K, Fukushima, M, Matsuda, A, Inagaki, F. | | Deposit date: | 2003-05-07 | | Release date: | 2004-05-04 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | Structural basis for the specificity, catalysis, and regulation of human uridine-cytidine kinase
STRUCTURE, 12, 2004
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1UEJ
 | | Crystal structure of human uridine-cytidine kinase 2 complexed with a substrate, cytidine | | Descriptor: | 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE, CITRIC ACID, Uridine-cytidine kinase 2 | | Authors: | Suzuki, N.N, Koizumi, K, Fukushima, M, Matsuda, A, Inagaki, F. | | Deposit date: | 2003-05-16 | | Release date: | 2004-05-04 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.61 Å) | | Cite: | Structural basis for the specificity, catalysis, and regulation of human uridine-cytidine kinase
STRUCTURE, 12, 2004
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1UFQ
 | | Crystal structure of ligand-free human uridine-cytidine kinase 2 | | Descriptor: | Uridine-cytidine kinase 2 | | Authors: | Suzuki, N.N, Koizumi, K, Fukushima, M, Matsuda, A, Inagaki, F. | | Deposit date: | 2003-06-06 | | Release date: | 2004-05-04 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Structural basis for the specificity, catalysis, and regulation of human uridine-cytidine kinase
STRUCTURE, 12, 2004
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1UGM
 | | Crystal Structure of LC3 | | Descriptor: | Microtubule-associated proteins 1A/1B light chain 3 | | Authors: | Sugawara, K, Suzuki, N.N, Fujioka, Y, Mizushima, N, Ohsumi, Y, Inagaki, F. | | Deposit date: | 2003-06-16 | | Release date: | 2004-07-06 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.05 Å) | | Cite: | The crystal structure of microtubule-associated protein light chain 3, a mammalian homologue of Saccharomyces cerevisiae Atg8
Genes Cells, 9, 2004
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1UJ2
 | | Crystal structure of human uridine-cytidine kinase 2 complexed with products, CMP and ADP | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, CYTIDINE-5'-MONOPHOSPHATE, MAGNESIUM ION, ... | | Authors: | Suzuki, N.N, Koizumi, K, Fukushima, M, Matsuda, A, Inagaki, F. | | Deposit date: | 2003-07-25 | | Release date: | 2004-05-04 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Structural basis for the specificity, catalysis, and regulation of human uridine-cytidine kinase
STRUCTURE, 12, 2004
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1WRF
 | | Refined solution structure of Der f 2, The Major Mite Allergen from Dermatophagoides farinae | | Descriptor: | Mite group 2 allergen Der f 2 | | Authors: | Ichikawa, S, Takai, T, Inoue, T, Yuuki, T, Okumura, Y, Ogura, K, Inagaki, F, Hatanaka, H. | | Deposit date: | 2004-10-15 | | Release date: | 2005-04-19 | | Last modified: | 2022-03-02 | | Method: | SOLUTION NMR | | Cite: | NMR Study on the Major Mite Allergen Der f 2: Its Refined Tertiary Structure, Epitopes for Monoclonal Antibodies and Characteristics Shared by ML Protein Group Members
J.Biochem.(Tokyo), 137, 2005
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2JPE
 | | FHA domain of NIPP1 | | Descriptor: | Nuclear inhibitor of protein phosphatase 1 | | Authors: | Kumeta, H, Ogura, K, Fujioka, Y, Tanuma, N, Kikuchi, K, Inagaki, F. | | Deposit date: | 2007-05-07 | | Release date: | 2007-05-15 | | Last modified: | 2023-12-20 | | Method: | SOLUTION NMR | | Cite: | The NMR structure of the NIPP1 FHA domain.
J.Biomol.Nmr, 40, 2008
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2KE4
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2KFJ
 | | Solution structure of the loop deletion mutant of PB1 domain of Cdc24p | | Descriptor: | Cell division control protein 24 | | Authors: | Ogura, K, Tandai, T, Yoshinaga, S, Kobashigawa, Y, Kumeta, H, Inagaki, F. | | Deposit date: | 2009-02-22 | | Release date: | 2009-10-06 | | Last modified: | 2022-03-16 | | Method: | SOLUTION NMR | | Cite: | NMR structure of the heterodimer of Bem1 and Cdc24 PB1 domains from Saccharomyces cerevisiae
J.Biochem., 146, 2009
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2K6Q
 | | LC3 p62 complex structure | | Descriptor: | Microtubule-associated proteins 1A/1B light chain 3B, p62_peptide from Sequestosome-1 | | Authors: | Noda, N, Kumeta, H, Nakatogawa, H, Satoo, K, Adachi, W, Ishii, J, Fujioka, Y, Ohsumi, Y, Inagaki, F. | | Deposit date: | 2008-07-17 | | Release date: | 2008-09-02 | | Last modified: | 2023-06-14 | | Method: | SOLUTION NMR | | Cite: | Structural basis of target recognition by ATG8/LC3 during selective autophagy
To be Published
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2KBT
 | | Attachment of an NMR-invisible solubility enhancement tag (INSET) using a sortase-mediated protein ligation method | | Descriptor: | Proto-oncogene vav,Immunoglobulin G-binding protein G | | Authors: | Kumeta, H, Kobashigawa, Y, Ogura, K, Inagaki, F. | | Deposit date: | 2008-12-07 | | Release date: | 2009-02-03 | | Last modified: | 2024-04-10 | | Method: | SOLUTION NMR | | Cite: | Attachment of an NMR-invisible solubility enhancement tag using a sortase-mediated protein ligation method
J.Biomol.Nmr, 43, 2009
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2KFK
 | | Solution structure of Bem1p PB1 domain complexed with Cdc24p PB1 domain | | Descriptor: | Bud emergence protein 1, Cell division control protein 24 | | Authors: | Kobashigawa, Y, Yoshinaga, S, Tandai, T, Ogura, K, Inagaki, F. | | Deposit date: | 2009-02-23 | | Release date: | 2009-10-06 | | Last modified: | 2022-03-16 | | Method: | SOLUTION NMR | | Cite: | NMR structure of the heterodimer of Bem1 and Cdc24 PB1 domains from Saccharomyces cerevisiae
J.Biochem., 146, 2009
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2KKC
 | | NMR structure of the p62 PB1 domain | | Descriptor: | Sequestosome-1 | | Authors: | Yokochi, M, Inagaki, F. | | Deposit date: | 2009-06-18 | | Release date: | 2009-09-15 | | Last modified: | 2021-11-10 | | Method: | SOLUTION NMR | | Cite: | The NMR structure of the p62 PB1 domain, a key protein in autophagy and NF-kappaB signaling pathway
J.Biomol.Nmr, 45, 2009
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2KTR
 | | NMR structure of p62 PB1 dimer determined based on PCS | | Descriptor: | Sequestosome-1, TERBIUM(III) ION | | Authors: | Saio, T, Yokochi, M, Kumeta, H, Inagaki, F. | | Deposit date: | 2010-02-05 | | Release date: | 2010-04-07 | | Last modified: | 2021-11-10 | | Method: | SOLUTION NMR | | Cite: | PCS-based structure determination of protein-protein complexes
J.Biomol.Nmr, 46, 2010
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2KSV
 | | The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum | | Descriptor: | Protein-glutaminase | | Authors: | Kumeta, H, Miwa, N, Ogura, K, Kai, Y, Mizukoshi, T, Shimba, N, Suzuki, E, Inagaki, F. | | Deposit date: | 2010-01-14 | | Release date: | 2010-02-16 | | Last modified: | 2022-03-16 | | Method: | SOLUTION NMR | | Cite: | The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum.
J.Biomol.Nmr, 46, 2010
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2KWC
 | | The NMR structure of the autophagy-related protein Atg8 | | Descriptor: | Autophagy-related protein 8 | | Authors: | Kumeta, H, Watanabe, M, Nakatogawa, H, Yamaguchi, M, Ogura, K, Adachi, W, Fujioka, Y, Noda, N.N, Ohsumi, Y, Inagaki, F. | | Deposit date: | 2010-04-05 | | Release date: | 2010-05-12 | | Last modified: | 2023-06-14 | | Method: | SOLUTION NMR | | Cite: | The NMR structure of the autophagy-related protein Atg8
J.Biomol.Nmr, 47, 2010
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2KZB
 | | Solution structure of alpha-mannosidase binding domain of Atg19 | | Descriptor: | Autophagy-related protein 19 | | Authors: | Watanabe, Y, Noda, N, Kumeta, H, Suzuki, K, Ohsumi, Y, Inagaki, F. | | Deposit date: | 2010-06-15 | | Release date: | 2010-07-21 | | Last modified: | 2023-06-14 | | Method: | SOLUTION NMR | | Cite: | Selective transport of alpha-mannosidase by autophagic pathways: structural basis for cargo recognition by Atg19 and Atg34.
J.Biol.Chem., 285, 2010
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2LPU
 | | Solution structures of KmAtg10 | | Descriptor: | KmAtg10 | | Authors: | Yamaguchi, M, Noda, N.N, Yamamoto, H, Shima, T, Kumeta, H, Kobashigawa, Y, Akada, R, Ohsumi, Y, Inagaki, F. | | Deposit date: | 2012-02-19 | | Release date: | 2012-08-01 | | Last modified: | 2023-06-14 | | Method: | SOLUTION NMR | | Cite: | Structural insights into atg10-mediated formation of the autophagy-essential atg12-atg5 conjugate
Structure, 20, 2012
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2KZK
 | | Solution structure of alpha-mannosidase binding domain of Atg34 | | Descriptor: | Uncharacterized protein YOL083W | | Authors: | Watanabe, Y, Noda, N, Kumeta, H, Suzuki, K, Ohsumi, Y, Inagaki, F. | | Deposit date: | 2010-06-18 | | Release date: | 2010-07-21 | | Last modified: | 2023-06-14 | | Method: | SOLUTION NMR | | Cite: | Selective transport of alpha-mannosidase by autophagic pathways: structural basis for cargo recognition by Atg19 and Atg34.
J.Biol.Chem., 285, 2010
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2LI5
 | | NMR structure of Atg8-Atg7C30 complex | | Descriptor: | Autophagy-related protein 8, Ubiquitin-like modifier-activating enzyme ATG7 | | Authors: | Kumeta, H, Satoo, K, Noda, N.N, Fujioka, Y, Ogura, K, Nakatogawa, H, Ohsumi, Y, Inagaki, F. | | Deposit date: | 2011-08-23 | | Release date: | 2011-11-16 | | Last modified: | 2023-06-14 | | Method: | SOLUTION NMR | | Cite: | Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
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2LHH
 | | Solution structure of Ca2+-bound yCaM | | Descriptor: | CALCIUM ION, Calmodulin | | Authors: | Ogura, K, Takahashi, K, Kobashigawa, Y, Yoshida, R, Itoh, H, Yazawa, M, Inagaki, F. | | Deposit date: | 2011-08-10 | | Release date: | 2012-08-29 | | Last modified: | 2023-06-14 | | Method: | SOLUTION NMR | | Cite: | Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin.
Genes Cells, 17, 2012
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2LHI
 | | Solution structure of Ca2+/CNA1 peptide-bound yCaM | | Descriptor: | CALCIUM ION, Calmodulin,Serine/threonine-protein phosphatase 2B catalytic subunit A1 | | Authors: | Ogura, K, Takahashi, K, Kobashigawa, Y, Yoshida, R, Itoh, H, Yazawa, M, Inagaki, F. | | Deposit date: | 2011-08-10 | | Release date: | 2012-08-29 | | Last modified: | 2023-06-14 | | Method: | SOLUTION NMR | | Cite: | Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin.
Genes Cells, 17, 2012
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2LDR
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2M1W
 | | TICAM-2 TIR domain | | Descriptor: | TIR domain-containing adapter molecule 2 | | Authors: | Enokizono, Y, Kumeta, H, Funami, K, Horiuchi, M, Sarmiento, J, Yamashita, K, Standley, D.M, Matsumoto, M, Seya, T, Inagaki, F. | | Deposit date: | 2012-12-07 | | Release date: | 2014-01-15 | | Last modified: | 2023-06-14 | | Method: | SOLUTION NMR | | Cite: | Structures and interface mapping of the TIR domain-containing adaptor molecules involved in interferon signaling.
Proc.Natl.Acad.Sci.USA, 110, 2013
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