Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4NWB
DownloadVisualize
BU of 4nwb by Molmil
Crystal structure of Mrt4
Descriptor: SULFATE ION, mRNA turnover protein 4
Authors:Holdermann, I, Sinning, I.
Deposit date:2013-12-06
Release date:2014-03-26
Last modified:2014-04-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:60S ribosome biogenesis requires rotation of the 5S ribonucleoprotein particle.
Nat Commun, 5, 2014
4WJS
DownloadVisualize
BU of 4wjs by Molmil
Crystal structure of Rsa4 from Chaetomium thermophilum
Descriptor: Rsa4
Authors:Holdermann, I, Bassler, J, Hurt, E, Sinning, I.
Deposit date:2014-10-01
Release date:2014-11-19
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A network of assembly factors is involved in remodeling rRNA elements during preribosome maturation.
J.Cell Biol., 207, 2014
4WJV
DownloadVisualize
BU of 4wjv by Molmil
Crystal structure of Rsa4 in complex with the Nsa2 binding peptide
Descriptor: Maltose-binding periplasmic protein, Ribosome assembly protein 4, Ribosome biogenesis protein NSA2, ...
Authors:Holdermann, I, Paternoga, H, Bassler, J, Hurt, E, Sinning, I.
Deposit date:2014-10-01
Release date:2014-11-19
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:A network of assembly factors is involved in remodeling rRNA elements during preribosome maturation.
J.Cell Biol., 207, 2014
3OCI
DownloadVisualize
BU of 3oci by Molmil
Crystal structure of TBP (TATA box binding protein)
Descriptor: 1,2-ETHANEDIOL, TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1)
Authors:Cui, S, Wollmann, P, Moldt, M, Hopfner, K.-P.
Deposit date:2010-08-10
Release date:2011-07-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.899 Å)
Cite:Structure and mechanism of the Swi2/Snf2 remodeller Mot1 in complex with its substrate TBP.
Nature, 475, 2011
5L3P
DownloadVisualize
BU of 5l3p by Molmil
Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Arenz, S, Wilson, D.N.
Deposit date:2016-05-24
Release date:2016-07-20
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:The stringent factor RelA adopts an open conformation on the ribosome to stimulate ppGpp synthesis.
Nucleic Acids Res., 44, 2016
4GMQ
DownloadVisualize
BU of 4gmq by Molmil
Ribosome-binding domain of Zuo1
Descriptor: Putative ribosome associated protein
Authors:Kopp, J, Bange, G, Sinning, I.
Deposit date:2012-08-16
Release date:2012-12-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural characterization of a eukaryotic chaperone-the ribosome-associated complex.
Nat.Struct.Mol.Biol., 20, 2013
4GNI
DownloadVisualize
BU of 4gni by Molmil
Structure of the Ssz1 ATPase bound to ATP and Magnesium
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Putative heat shock protein
Authors:Bange, G, Sinning, I.
Deposit date:2012-08-17
Release date:2012-12-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.796 Å)
Cite:Structural characterization of a eukaryotic chaperone-the ribosome-associated complex.
Nat.Struct.Mol.Biol., 20, 2013
2RF4
DownloadVisualize
BU of 2rf4 by Molmil
Crystal structure of the RNA Polymerase I subcomplex A14/43
Descriptor: DNA-directed RNA polymerase I subunit RPA4
Authors:Geiger, S.R, Kuhn, C.D, Cramer, P.
Deposit date:2007-09-28
Release date:2008-01-15
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Functional architecture of RNA polymerase I.
Cell(Cambridge,Mass.), 131, 2007
7AXZ
DownloadVisualize
BU of 7axz by Molmil
Ku70/80 complex apo form
Descriptor: X-ray repair cross-complementing protein 5, X-ray repair cross-complementing protein 6
Authors:Hnizda, A, Tesina, P, Novak, P, Blundell, T.L.
Deposit date:2020-11-10
Release date:2021-02-10
Last modified:2021-07-28
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:SAP domain forms a flexible part of DNA aperture in Ku70/80.
Febs J., 288, 2021
5GAK
DownloadVisualize
BU of 5gak by Molmil
Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
Descriptor: 25S rRNA, 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione, 5.8S rRNA, ...
Authors:Schmidt, C, Becker, T.
Deposit date:2015-12-09
Release date:2016-02-24
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.88 Å)
Cite:Structure of the hypusinylated eukaryotic translation factor eIF-5A bound to the ribosome.
Nucleic Acids Res., 44, 2016
2XL1
DownloadVisualize
BU of 2xl1 by Molmil
Structural basis of translational stalling by human cytomegalovirus (hCMV) and fungal arginine attenuator peptide (AAP)
Descriptor: ARGININE ATTENUATOR PEPTIDE
Authors:Meyer, N.H, Sattler, M.
Deposit date:2010-07-15
Release date:2010-10-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Basis for Translational Stalling by Human Cytomegalovirus and Fungal Arginine Attenuator Peptide.
Mol.Cell, 40, 2010
5M6S
DownloadVisualize
BU of 5m6s by Molmil
folding intermediate of spectrin R16
Descriptor: spectrin
Authors:Nilsson, O.B, Nickson, A.A, Clarke, J.
Deposit date:2016-10-25
Release date:2017-01-11
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Cotranslational folding of spectrin domains via partially structured states.
Nat. Struct. Mol. Biol., 24, 2017
4WJU
DownloadVisualize
BU of 4wju by Molmil
Crystal structure of Rsa4 from Saccharomyces cerevisiae
Descriptor: GLYCEROL, Ribosome assembly protein 4
Authors:Holdermann, I, Bassler, J, Hurt, E, Sinning, I.
Deposit date:2014-10-01
Release date:2014-11-19
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A network of assembly factors is involved in remodeling rRNA elements during preribosome maturation.
J.Cell Biol., 207, 2014
6YXJ
DownloadVisualize
BU of 6yxj by Molmil
Crystal structure of SARS-CoV macrodomain II in complex with human Paip1
Descriptor: Non-structural protein 3, Polyadenylate-binding protein-interacting protein 1
Authors:Lei, J, Hilgenfeld, R.
Deposit date:2020-05-02
Release date:2021-03-17
Last modified:2021-09-29
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The SARS-unique domain (SUD) of SARS-CoV and SARS-CoV-2 interacts with human Paip1 to enhance viral RNA translation.
Embo J., 40, 2021
3HYB
DownloadVisualize
BU of 3hyb by Molmil
Crystal structure of RbcX from Anabaena, crystal form II
Descriptor: RbcX protein, SULFATE ION
Authors:Bracher, A, Liu, C.
Deposit date:2009-06-22
Release date:2010-01-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Coupled chaperone action in folding and assembly of hexadecameric Rubisco.
Nature, 463, 2010
6Y69
DownloadVisualize
BU of 6y69 by Molmil
Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Wieland, M, Wilson, D.N.
Deposit date:2020-02-26
Release date:2020-07-01
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Tetracenomycin X inhibits translation by binding within the ribosomal exit tunnel.
Nat.Chem.Biol., 16, 2020
7NRD
DownloadVisualize
BU of 7nrd by Molmil
Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
Descriptor: 25S rRNA (3184-MER), 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ...
Authors:Pochopien, A.A, Beckert, B, Wilson, D.N.
Deposit date:2021-03-03
Release date:2021-04-14
Method:ELECTRON MICROSCOPY (4.36 Å)
Cite:Structure of Gcn1 bound to stalled and colliding 80S ribosomes.
Proc.Natl.Acad.Sci.USA, 118, 2021
7NRC
DownloadVisualize
BU of 7nrc by Molmil
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Descriptor: 18S rRNA (1771-MER), 25S rRNA (3184-MER), 40S ribosomal protein S0-A, ...
Authors:Pochopien, A.A, Beckert, B, Wilson, D.N.
Deposit date:2021-03-03
Release date:2021-05-05
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structure of Gcn1 bound to stalled and colliding 80S ribosomes.
Proc.Natl.Acad.Sci.USA, 118, 2021
7O9F
DownloadVisualize
BU of 7o9f by Molmil
Bacillus subtilis Ffh in complex with ppGpp
Descriptor: GUANOSINE-5',3'-TETRAPHOSPHATE, MAGNESIUM ION, Signal recognition particle protein
Authors:Czech, L, Mais, C.-N, Bange, G.
Deposit date:2021-04-16
Release date:2022-02-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Inhibition of SRP-dependent protein secretion by the bacterial alarmone (p)ppGpp.
Nat Commun, 13, 2022
7O9G
DownloadVisualize
BU of 7o9g by Molmil
Escherichia coli Ffh in complex with ppGpp
Descriptor: GUANOSINE-5',3'-TETRAPHOSPHATE, MAGNESIUM ION, Signal recognition particle protein
Authors:Czech, L, Mais, C.-N, Bange, G.
Deposit date:2021-04-16
Release date:2022-02-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Inhibition of SRP-dependent protein secretion by the bacterial alarmone (p)ppGpp.
Nat Commun, 13, 2022
7O9H
DownloadVisualize
BU of 7o9h by Molmil
Escherichia coli FtsY in complex with pppGpp
Descriptor: Signal recognition particle receptor FtsY, guanosine 5'-(tetrahydrogen triphosphate) 3'-(trihydrogen diphosphate)
Authors:Czech, L, Mais, C.-N, Bange, G.
Deposit date:2021-04-16
Release date:2022-02-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Inhibition of SRP-dependent protein secretion by the bacterial alarmone (p)ppGpp.
Nat Commun, 13, 2022
7O9I
DownloadVisualize
BU of 7o9i by Molmil
Escherichia coli Ffh in complex with pppGpp
Descriptor: Signal recognition particle protein, guanosine 5'-(tetrahydrogen triphosphate) 3'-(trihydrogen diphosphate)
Authors:Czech, L, Mais, C.-N, Bange, G.
Deposit date:2021-04-16
Release date:2022-02-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Inhibition of SRP-dependent protein secretion by the bacterial alarmone (p)ppGpp.
Nat Commun, 13, 2022
6FTG
DownloadVisualize
BU of 6ftg by Molmil
Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
Descriptor: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ...
Authors:Pfeffer, S, Foerster, F.
Deposit date:2018-02-22
Release date:2018-03-21
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (9.1 Å)
Cite:Structural basis for coupling protein transport and N-glycosylation at the mammalian endoplasmic reticulum.
Science, 360, 2018
3RG6
DownloadVisualize
BU of 3rg6 by Molmil
Crystal structure of a chaperone-bound assembly intermediate of form I Rubisco
Descriptor: RbcX protein, Ribulose bisphosphate carboxylase large chain
Authors:Bracher, A, Starling-Windhof, A, Hartl, F.U, Hayer-Hartl, M.
Deposit date:2011-04-07
Release date:2011-07-20
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of a chaperone-bound assembly intermediate of form I Rubisco.
Nat.Struct.Mol.Biol., 18, 2011
6ENJ
DownloadVisualize
BU of 6enj by Molmil
Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)
Descriptor: 16S ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Huter, P, Wilson, D.N.
Deposit date:2017-10-05
Release date:2017-11-22
Last modified:2019-10-30
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural Basis for Polyproline-Mediated Ribosome Stalling and Rescue by the Translation Elongation Factor EF-P.
Mol. Cell, 68, 2017

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon