Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6XIG
DownloadVisualize
BU of 6xig by Molmil
X-ray crystal structure of MqnE from Pedobacter heparinus
Descriptor: Aminodeoxyfutalosine synthase, D(-)-TARTARIC ACID, IRON/SULFUR CLUSTER
Authors:Grove, T.L, Bonanno, J.B, Almo, S.C.
Deposit date:2020-06-19
Release date:2020-07-15
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Narrow-Spectrum Antibiotic Targeting of the Radical SAM Enzyme MqnE in Menaquinone Biosynthesis.
Biochemistry, 59, 2020
6XI9
DownloadVisualize
BU of 6xi9 by Molmil
X-ray crystal structure of MqnE from Pedobacter heparinus in complex with aminofutalosine and methionine
Descriptor: 9-[7-(3-carboxyphenyl)-5,6-dideoxy-beta-D-ribo-heptodialdo-1,4-furanosyl]-9H-purin-6-amine, Aminodeoxyfutalosine synthase, CHLORIDE ION, ...
Authors:Grove, T.L, Bonanno, J.B, Almo, S.C.
Deposit date:2020-06-19
Release date:2020-07-15
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Narrow-Spectrum Antibiotic Targeting of the Radical SAM Enzyme MqnE in Menaquinone Biosynthesis.
Biochemistry, 59, 2020
6WGM
DownloadVisualize
BU of 6wgm by Molmil
Crystal structure of a marine metagenome TRAP solute binding protein specific for pyroglutamate (Sorcerer II Global Ocean Sampling Expedition, unidentified microbe, scf7180008839099) in complex with co-purified pyroglutamate
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, FORMIC ACID, ...
Authors:Fedorov, E, Vetting, M.W, Hogle, S.L, Dupont, C.L, Almo, S.C, Ghosh, A.
Deposit date:2020-04-05
Release date:2020-04-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of a marine metagenome TRAP solute binding protein specific for aromatic acid ligands (Sorcerer II Global Ocean Sampling Expedition, unidentified microbe, GOS_140), in complex with co-purified pyroglutamate
To Be Published
3BY5
DownloadVisualize
BU of 3by5 by Molmil
Crystal structure of cobalamin biosynthesis protein chiG from Agrobacterium tumefaciens str. C58
Descriptor: Cobalamin biosynthesis protein, SULFATE ION
Authors:Patskovsky, Y, Bonanno, J.B, Sojitra, S, Rutter, M, Iizuka, M, Maletic, M, Wasserman, S.R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-01-15
Release date:2008-01-22
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Crystal structure of cobalamin biosynthesis protein from Agrobacterium tumefaciens str. C58.
To be Published
3C3M
DownloadVisualize
BU of 3c3m by Molmil
Crystal structure of the N-terminal domain of response regulator receiver protein from Methanoculleus marisnigri JR1
Descriptor: GLYCEROL, Response regulator receiver protein
Authors:Patskovsky, Y, Ramagopal, U.A, Toro, R, Meyer, A.J, Dickey, M, Chang, S, Groshong, C, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-01-28
Release date:2008-02-05
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the N-terminal domain of response regulator receiver protein from Methanoculleus marisnigri JR1.
To be Published
3BMA
DownloadVisualize
BU of 3bma by Molmil
Crystal structure of D-alanyl-lipoteichoic acid synthetase from Streptococcus pneumoniae R6
Descriptor: D-alanyl-lipoteichoic acid synthetase, GLYCEROL, SULFATE ION
Authors:Patskovsky, Y, Sridhar, V, Bonanno, J.B, Smith, D, Rutter, M, Iizuka, M, Koss, J, Bain, K, Gheyi, T, Wasserman, S.R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-12-12
Release date:2007-12-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Crystal Structure of probable D-Alanyl-Lipoteichoic Acid Synthetase from Streptococcus pneumoniae.
To be Published
3BT5
DownloadVisualize
BU of 3bt5 by Molmil
Crystal structure of DUF305 fragment from Deinococcus radiodurans
Descriptor: CHLORIDE ION, Uncharacterized protein DUF305
Authors:Ramagopal, U.A, Patskovsky, Y, Rutter, M, Toro, R, Bain, K, Meyer, A.J, Powell, A, Gheyi, T, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-12-27
Release date:2008-01-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal structure of DUF305 fragment from Deinococcus radiodurans.
To be Published
3BSM
DownloadVisualize
BU of 3bsm by Molmil
Crystal structure of D-mannonate dehydratase from Chromohalobacter salexigens
Descriptor: Mandelate racemase/muconate lactonizing enzyme
Authors:Fedorov, A.A, Fedorov, E.V, Toro, R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-12-25
Release date:2008-01-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of D-mannonate dehydratase from Chromohalobacter salexigens.
To be Published
3BVC
DownloadVisualize
BU of 3bvc by Molmil
Crystal structure of uncharacterized protein Ism_01780 from Roseovarius nubinhibens ISM
Descriptor: CALCIUM ION, NICKEL (II) ION, Uncharacterized protein Ism_01780
Authors:Patskovsky, Y, Toro, R, Meyer, A.J, Rutter, M, Iizuka, M, Maletic, M, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-01-06
Release date:2008-02-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structure of an uncharacterized protein Ism_01780 from Roseovarius nubinhibens.
To be Published
3CAW
DownloadVisualize
BU of 3caw by Molmil
Crystal structure of o-succinylbenzoate synthase from Bdellovibrio bacteriovorus liganded with Mg
Descriptor: MAGNESIUM ION, o-succinylbenzoate synthase
Authors:Fedorov, A.A, Fedorov, E.V, Sakai, A, Burley, S.K, Gerlt, J.A, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-02-20
Release date:2008-03-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Loss of quaternary structure is associated with rapid sequence divergence in the OSBS family.
Proc.Natl.Acad.Sci.USA, 111, 2014
3BQ9
DownloadVisualize
BU of 3bq9 by Molmil
Crystal structure of predicted nucleotide-binding protein from Idiomarina baltica OS145
Descriptor: GLYCEROL, Predicted Rossmann fold nucleotide-binding domain-containing protein, SULFATE ION
Authors:Patskovsky, Y, Toro, R, Meyer, A.J, Dickey, M, Eberle, M, Koss, J, Groshong, C, Wasserman, S.R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-12-19
Release date:2008-01-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Predicted Nucleotide-Binding Protein from Idiomarina baltica.
To be Published
3CE2
DownloadVisualize
BU of 3ce2 by Molmil
Crystal structure of putative peptidase from Chlamydophila abortus
Descriptor: Putative peptidase, ZINC ION
Authors:Ramagopal, U.A, Toro, R, Gilmore, M, Eberle, M, Maletic, M, Meyer, A.J, Rodgers, L, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-02-28
Release date:2008-03-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of putative peptidase from Chlamydophila abortus.
To be Published
3C9F
DownloadVisualize
BU of 3c9f by Molmil
Crystal structure of 5'-nucleotidase from Candida albicans SC5314
Descriptor: 5'-nucleotidase, FORMIC ACID, SODIUM ION, ...
Authors:Patskovsky, Y, Romero, R, Gilmore, M, Eberle, M, Bain, K, Smith, D, Wasserman, S.R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-02-15
Release date:2008-02-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of 5'-nucleotidase from Candida albicans.
To be Published
3C8C
DownloadVisualize
BU of 3c8c by Molmil
Crystal structure of Mcp_N and cache domains of methyl-accepting chemotaxis protein from Vibrio cholerae
Descriptor: ALANINE, MAGNESIUM ION, Methyl-accepting chemotaxis protein
Authors:Patskovsky, Y, Ozyurt, S, Freeman, J, Hu, S, Smith, D, Wasserman, S.R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-02-11
Release date:2008-02-19
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of Mcp_N and cache N-terminal domains of methyl-accepting chemotaxis protein from Vibrio cholerae.
To be Published
3CAK
DownloadVisualize
BU of 3cak by Molmil
X-ray structure of WT PTE with ethyl phosphate
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, COBALT (II) ION, DIETHYL HYDROGEN PHOSPHATE, ...
Authors:Kim, J, Tsai, P.-C, Almo, S.C, Raushel, F.M.
Deposit date:2008-02-20
Release date:2008-10-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structure of diethyl phosphate bound to the binuclear metal center of phosphotriesterase.
Biochemistry, 47, 2008
3CB3
DownloadVisualize
BU of 3cb3 by Molmil
Crystal structure of L-Talarate dehydratase from Polaromonas sp. JS666 complexed with Mg and L-glucarate
Descriptor: L-GLUCARIC ACID, MAGNESIUM ION, Mandelate racemase/muconate lactonizing enzyme
Authors:Fedorov, A.A, Fedorov, E.V, Yew, W.S, Burley, S.K, Gerlt, J.A, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-02-21
Release date:2008-03-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of L-Talarate dehydratase from Polaromonas sp. JS666 complexed with Mg and L-glucarate.
To be Published
3CAX
DownloadVisualize
BU of 3cax by Molmil
Crystal structure of uncharacterized protein PF0695
Descriptor: Uncharacterized protein PF0695
Authors:Ramagopal, U.A, Hu, S, Toro, R, Gilmore, M, Bain, K, Meyer, A.J, Rodgers, L, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-02-20
Release date:2008-03-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Crystal structure of uncharacterized protein PF0695.
To be Published
3CBW
DownloadVisualize
BU of 3cbw by Molmil
Crystal structure of the YdhT protein from Bacillus subtilis
Descriptor: CITRIC ACID, YdhT protein
Authors:Bonanno, J.B, Rutter, M, Bain, K.T, Iizuka, M, Romero, R, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-02-23
Release date:2008-03-11
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.269 Å)
Cite:Crystal structure of the YdhT protein from Bacillus subtilis.
To be Published
3CDX
DownloadVisualize
BU of 3cdx by Molmil
Crystal structure of succinylglutamatedesuccinylase/aspartoacylase from Rhodobacter sphaeroides
Descriptor: CALCIUM ION, Succinylglutamatedesuccinylase/aspartoacylase
Authors:Bonanno, J.B, Rutter, M, Bain, K.T, Iizuka, M, Patterson, K, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-02-27
Release date:2008-03-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of succinylglutamatedesuccinylase/aspartoacylase from Rhodobacter sphaeroides.
To be Published
4NHZ
DownloadVisualize
BU of 4nhz by Molmil
Crystal structure of glutathione transferase BBTA-3750 from Bradyrhizobium sp., Target EFI-507290, with one glutathione bound
Descriptor: GLUTATHIONE, Putative glutathione S-transferase enzyme with thioredoxin-like domain
Authors:Patskovsky, Y, Vetting, M.W, Toro, R, Bhosle, R, Al Obaidi, N, Morisco, L.L, Wasserman, S.R, Sojitra, S, Stead, M, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Gerlt, J.A, Armstrong, R.N, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2013-11-05
Release date:2013-11-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Crystal Structure of Glutathione Transferase Bbta-3750 from Bradyrhizobium Sp., Target Efi-507290
To be Published
4NN3
DownloadVisualize
BU of 4nn3 by Molmil
Crystal structure of a TRAP periplasmic solute binding protein from Desulfovibrio salexigens (Desal_2161), Target EFI-510109, with bound orotic acid
Descriptor: CHLORIDE ION, OROTIC ACID, TRAP dicarboxylate transporter, ...
Authors:Vetting, M.W, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Sojitra, S, Stead, M, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2013-11-16
Release date:2013-12-04
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Biochemistry, 54, 2015
4NQ8
DownloadVisualize
BU of 4nq8 by Molmil
Crystal structure of a trap periplasmic solute binding protein from Bordetella bronchispeptica (bb3421), target EFI-510039, with density modeled as pantoate
Descriptor: CHLORIDE ION, PANTOATE, Putative periplasmic substrate-binding transport protein, ...
Authors:Vetting, M.W, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Sojitra, S, Stead, M, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2013-11-24
Release date:2014-01-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Biochemistry, 54, 2015
4NSN
DownloadVisualize
BU of 4nsn by Molmil
Crystal structure of purine nucleoside phosphorylase from Porphyromonas gingivalis ATCC 33277, NYSGRC Target 030972, orthorhombic symmetry
Descriptor: ADENINE, Purine nucleoside phosphorylase, SULFATE ION
Authors:Malashkevich, V.N, Bhosle, R, Toro, R, Hillerich, B, Gizzi, A, Garforth, S, Kar, A, Chan, M.K, Lafluer, J, Patel, H, Matikainen, B, Chamala, S, Lim, S, Celikgil, A, Villegas, G, Evans, B, Love, J, Fiser, A, Seidel, R, Bonanno, J.B, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2013-11-28
Release date:2013-12-25
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of purine nucleoside phosphorylase from Porphyromonas gingivalis ATCC 33277, NYSGRC Target 030972, orthorhombic symmetry.
To be Published
4NX5
DownloadVisualize
BU of 4nx5 by Molmil
Crystal structure of orotidine 5'-monophosphate decarboxylase from methanobacterium thermoautotrophicum complexed with 6-azauridine 5'-monophosphate
Descriptor: 1,2-ETHANEDIOL, 6-AZA URIDINE 5'-MONOPHOSPHATE, CHLORIDE ION, ...
Authors:Fedorov, A.A, Fedorov, E.V, Chan, K.K, Gerlt, J.A, Almo, S.C.
Deposit date:2013-12-08
Release date:2013-12-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.591 Å)
Cite:Crystal structure of orotidine 5'-monophosphate decarboxylase from methanobacterium thermoautotrophicum complexed with 6-azauridine 5'-monophosphate
To be Published
4NS1
DownloadVisualize
BU of 4ns1 by Molmil
Crystal structure of purine nucleoside phosphorylase from Porphyromonas gingivalis ATCC 33277, NYSGRC Target 30972
Descriptor: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, GLYCEROL, Purine nucleoside phosphorylase, ...
Authors:Malashkevich, V.N, Bhosle, R, Toro, R, Hillerich, B, Gizzi, A, Garforth, S, Kar, A, Chan, M.K, Lafluer, J, Patel, H, Matikainen, B, Chamala, S, Lim, S, Celikgil, A, Villegas, G, Evans, B, Love, J, Fiser, A, Seidel, R, Bonanno, J.B, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2013-11-27
Release date:2013-12-25
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Crystal structure of purine nucleoside phosphorylase from Porphyromonas gingivalis ATCC 33277, NYSGRC Target 30972.
To be Published

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon