Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7MQJ
DownloadVisualize
BU of 7mqj by Molmil
Dhr1 Helicase Core
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Probable ATP-dependent RNA helicase DHR1
Authors:Miller, L, Chaker-Margot, M, Klinge, S.
Deposit date:2021-05-05
Release date:2021-09-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Nucleolar maturation of the human small subunit processome.
Science, 373, 2021
1NPY
DownloadVisualize
BU of 1npy by Molmil
Structure of shikimate 5-dehydrogenase-like protein HI0607
Descriptor: ACETYL GROUP, Hypothetical shikimate 5-dehydrogenase-like protein HI0607
Authors:Korolev, S, Koroleva, O, Zarembinski, T, Collart, F, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2003-01-20
Release date:2003-07-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal Structure of a Novel Shikimate Dehydrogenase from Haemophilus influenzae.
J.Biol.Chem., 280, 2005
4ZWV
DownloadVisualize
BU of 4zwv by Molmil
Crystal Structure of Aminotransferase AtmS13 from Actinomadura melliaura
Descriptor: GLYCEROL, Putative aminotransferase
Authors:Kim, Y, Bigelow, L, Endres, M, Wang, F, Phillips Jr, G.N, Joachimiak, A, Enzyme Discovery for Natural Product Biosynthesis (NatPro), Midwest Center for Structural Genomics (MCSG)
Deposit date:2015-05-19
Release date:2015-06-03
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (1.503 Å)
Cite:Structural characterization of AtmS13, a putative sugar aminotransferase involved in indolocarbazole AT2433 aminopentose biosynthesis.
Proteins, 83, 2015
5XRX
DownloadVisualize
BU of 5xrx by Molmil
EFK17DA structure in Microgel MAA60
Descriptor: Cathelicidin antimicrobial peptide
Authors:Datta, A, Bhunia, A.
Deposit date:2017-06-10
Release date:2018-04-18
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Conformational Aspects of High Content Packing of Antimicrobial Peptides in Polymer Microgels
ACS Appl Mater Interfaces, 9, 2017
5XNG
DownloadVisualize
BU of 5xng by Molmil
EFK17A structure in Microgel MAA60
Descriptor: Cathelicidin antimicrobial peptide
Authors:Datta, A, Bhunia, A.
Deposit date:2017-05-22
Release date:2018-04-18
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Conformational Aspects of High Content Packing of Antimicrobial Peptides in Polymer Microgels
ACS Appl Mater Interfaces, 9, 2017
4J2N
DownloadVisualize
BU of 4j2n by Molmil
Crystal Structure of mycobacteriophage Pukovnik Xis
Descriptor: Gp37, SULFATE ION
Authors:Homa, N.J, Amrich, C.G, Heroux, A, VanDemark, A.P.
Deposit date:2013-02-04
Release date:2013-10-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.348 Å)
Cite:The Structure of Xis Reveals the Basis for Filament Formation and Insight into DNA Bending within a Mycobacteriophage Intasome.
J.Mol.Biol., 426, 2014
2NCW
DownloadVisualize
BU of 2ncw by Molmil
NMR structure of WWWKYE21 structure in LPS micelles
Descriptor: Heparin cofactor 2
Authors:Datta, A, Bhunia, A.
Deposit date:2016-04-18
Release date:2017-03-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Tryptophan end-tagging for promoted lipopolysaccharide interactions and anti-inflammatory effects.
Sci Rep, 7, 2017
2NCU
DownloadVisualize
BU of 2ncu by Molmil
NMR structure of KYE21 in LPS micelles
Descriptor: Heparin cofactor 2
Authors:Datta, A, Bhunia, A, Malmsten, M.
Deposit date:2016-04-18
Release date:2017-03-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Tryptophan end-tagging for promoted lipopolysaccharide interactions and anti-inflammatory effects.
Sci Rep, 7, 2017
7JM5
DownloadVisualize
BU of 7jm5 by Molmil
Crystal structure of KDM4B in complex with QC6352
Descriptor: 3-[({(1R)-6-[methyl(phenyl)amino]-1,2,3,4-tetrahydronaphthalen-1-yl}methyl)amino]pyridine-4-carboxylic acid, Lysine-specific demethylase 4B, NICKEL (II) ION, ...
Authors:White, S.W, Yun, M.
Deposit date:2020-07-31
Release date:2022-02-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Targeting KDM4 for treating PAX3-FOXO1-driven alveolar rhabdomyosarcoma.
Sci Transl Med, 14, 2022
7Z0Y
DownloadVisualize
BU of 7z0y by Molmil
THSC20.HVTR04 Fab bound to SARS-CoV-2 Receptor Binding Domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, SULFATE ION, Spike protein S1, ...
Authors:Wibmer, C.K.
Deposit date:2022-02-23
Release date:2022-04-13
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:A combination of potently neutralizing monoclonal antibodies isolated from an Indian convalescent donor protects against the SARS-CoV-2 Delta variant.
Plos Pathog., 18, 2022
7Z0X
DownloadVisualize
BU of 7z0x by Molmil
THSC20.HVTR26 Fab bound to SARS-CoV-2 Receptor Binding Domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Spike protein S1, ...
Authors:Wibmer, C.K.
Deposit date:2022-02-23
Release date:2022-04-13
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A combination of potently neutralizing monoclonal antibodies isolated from an Indian convalescent donor protects against the SARS-CoV-2 Delta variant.
Plos Pathog., 18, 2022
6WIT
DownloadVisualize
BU of 6wit by Molmil
Crystal structure of NHP D15.SD7 Fab in complex with 16055 V1V2 1FD6 scaffold
Descriptor: 16055 V1V2 1FD6 Scaffold, 2-acetamido-2-deoxy-beta-D-glucopyranose, NHP GN1-SD7 Fab Heavy Chain, ...
Authors:Liban, T, Aljedani, S, Rodarte, J, Pancera, M.
Deposit date:2020-04-10
Release date:2021-04-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Structurally related but genetically unrelated antibody lineages converge on an immunodominant HIV-1 Env neutralizing determinant following trimer immunization.
Plos Pathog., 17, 2021
8BWU
DownloadVisualize
BU of 8bwu by Molmil
Crystal structure of SARS-CoV-2 nsp14 methyltransferase domain in complex with the SS148 inhibitor
Descriptor: (2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(4-azanyl-5-cyano-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid, Transcription factor ETV6,Proofreading exoribonuclease nsp14, ZINC ION
Authors:Konkolova, E, Klima, M, Boura, E, Jin, J, Kaniskan, H.U, Han, Y, Vedadi, M.
Deposit date:2022-12-07
Release date:2023-10-11
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Drug Discovery in Low Data Regimes: Leveraging a Computational Pipeline for the Discovery of Novel SARS-CoV-2 Nsp14-MTase Inhibitors.
Biorxiv, 2024
5J61
DownloadVisualize
BU of 5j61 by Molmil
D-aminoacyl-tRNA deacylase (DTD) from Plasmodium falciparum in complex with glycyl-3'-aminoadenosine at 2.10 Angstrom resolution
Descriptor: 3'-deoxy-3'-(glycylamino)adenosine, D-tyrosyl-tRNA(Tyr) deacylase
Authors:Routh, S.B, Ahmad, S, Sankaranarayanan, R.
Deposit date:2016-04-04
Release date:2016-09-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Elongation Factor Tu Prevents Misediting of Gly-tRNA(Gly) Caused by the Design Behind the Chiral Proofreading Site of D-Aminoacyl-tRNA Deacylase
Plos Biol., 14, 2016
6WRP
DownloadVisualize
BU of 6wrp by Molmil
Crystal Structure of PI3-E12 Fab, An Antibody Against Human Parainfluenza Virus Type III
Descriptor: 1,2-ETHANEDIOL, AMMONIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Weidle, C, Pancera, M.
Deposit date:2020-04-29
Release date:2021-05-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Protective antibodies against human parainfluenza virus type 3 infection.
Mabs, 13, 2021
2QDJ
DownloadVisualize
BU of 2qdj by Molmil
Crystal structure of the Retinoblastoma protein N-domain provides insight into tumor suppression, ligand interaction and holoprotein architecture
Descriptor: Retinoblastoma-associated protein
Authors:Hassler, M, Mittnacht, S, Pearl, L.H.
Deposit date:2007-06-21
Release date:2008-01-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the retinoblastoma protein N domain provides insight into tumor suppression, ligand interaction, and holoprotein architecture.
Mol.Cell, 28, 2007
7ZCB
DownloadVisualize
BU of 7zcb by Molmil
Human Pikachurin/EGFLAM N-terminal Fibronectin-III (1-2) domains
Descriptor: CHLORIDE ION, Pikachurin, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Pantalone, S, Savino, S, Viti, L.V, Forneris, F.
Deposit date:2022-03-26
Release date:2023-07-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the photoreceptor synaptic assembly of the extracellular matrix protein pikachurin with the orphan receptor GPR179.
Sci.Signal., 16, 2023
8D1B
DownloadVisualize
BU of 8d1b by Molmil
CryoEM structure of human orphan GPCR GPR179 in complex with extracellular matrix protein pikachurin
Descriptor: Pikachurin, Probable G-protein coupled receptor 179
Authors:Patil, D.N, Martemyanov, K.A.
Deposit date:2022-05-27
Release date:2023-07-26
Last modified:2023-08-16
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:Structure of the photoreceptor synaptic assembly of the extracellular matrix protein pikachurin with the orphan receptor GPR179.
Sci.Signal., 16, 2023
7ZC9
DownloadVisualize
BU of 7zc9 by Molmil
Human Pikachurin/EGFLAM C-terminal Laminin-G domain (LG3)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Pikachurin, SULFATE ION
Authors:Pantalone, S, Forneris, F.
Deposit date:2022-03-26
Release date:2023-07-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the photoreceptor synaptic assembly of the extracellular matrix protein pikachurin with the orphan receptor GPR179.
Sci.Signal., 16, 2023
7WVL
DownloadVisualize
BU of 7wvl by Molmil
Structure of P4A2 Fab in complex with Spike-RBD from SARS-CoV-2
Descriptor: P4A2 Fab Light Chain, P4A2 Fab heavy chain, Spike protein S1
Authors:Narayanan, N, Nair, D.T.
Deposit date:2022-02-10
Release date:2022-12-07
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (3 Å)
Cite:A broadly neutralizing monoclonal antibody overcomes the mutational landscape of emerging SARS-CoV-2 variants of concern.
Plos Pathog., 18, 2022
6LFH
DownloadVisualize
BU of 6lfh by Molmil
X-ray crystal structure of chemically synthesized human lysozyme
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Kar, A, Das, A, Mandal, K.
Deposit date:2019-12-02
Release date:2020-07-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Efficient Chemical Protein Synthesis using Fmoc-Masked N-Terminal Cysteine in Peptide Thioester Segments.
Angew.Chem.Int.Ed.Engl., 59, 2020
6XLZ
DownloadVisualize
BU of 6xlz by Molmil
Structure of NHP D11A.F2 Fab in complex with 16055 V2b peptide
Descriptor: (R,R)-2,3-BUTANEDIOL, Envelope glycoprotein gp160, NHP_D11A.F2_Fab_Heavy_chain, ...
Authors:Aljedani, S, Rodarte, J, Liban, T, Pancera, M.
Deposit date:2020-06-29
Release date:2021-07-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structurally related but genetically unrelated antibody lineages converge on an immunodominant HIV-1 Env neutralizing determinant following trimer immunization.
Plos Pathog., 17, 2021
6XSN
DownloadVisualize
BU of 6xsn by Molmil
Crystal structure of NHP VD20.5A4 Fab in complex with 16055 V1V2 1FD6 scaffold
Descriptor: 1,2-ETHANEDIOL, 16055_V1V2-1FD6, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Aljedani, S, Pancera, M.
Deposit date:2020-07-15
Release date:2021-07-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.87 Å)
Cite:Structurally related but genetically unrelated antibody lineages converge on an immunodominant HIV-1 Env neutralizing determinant following trimer immunization.
Plos Pathog., 17, 2021
6XGT
DownloadVisualize
BU of 6xgt by Molmil
Crystal structure of cyanase from the thermophilic fungus Thermomyces lanuginosus
Descriptor: Cyanate hydratase, FORMIC ACID, MALONATE ION
Authors:Choi, P.H, Ranjan, B, Tong, L.
Deposit date:2020-06-18
Release date:2021-01-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a thermophilic fungal cyanase and its implications on the catalytic mechanism for bioremediation.
Sci Rep, 11, 2021
7UJ4
DownloadVisualize
BU of 7uj4 by Molmil
Inhibition of Human Menin by SNDX-5613
Descriptor: 2-({4-[7-({(1r,4r)-4-[(ethanesulfonyl)amino]cyclohexyl}methyl)-2,7-diazaspiro[3.5]nonan-2-yl]pyrimidin-5-yl}oxy)-N-ethyl-5-fluoro-N-(propan-2-yl)benzamide, Isoform 2 of Menin, MAGNESIUM ION
Authors:McKeever, B.M, Kulkarni, S, McGeehan, G.M.
Deposit date:2022-03-30
Release date:2022-12-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:MEN1 mutations mediate clinical resistance to menin inhibition.
Nature, 615, 2023

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon