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3BWT
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BU of 3bwt by Molmil
Crystal structure of the RNA binding domain of Puf4 from Saccharomyces cerevisiae
Descriptor: Protein PUF4
Authors:Miller, M.T, Higgin, J.J, Hall, T.M.T.
Deposit date:2008-01-10
Release date:2008-03-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p
Nat.Struct.Mol.Biol., 15, 2008
3BX2
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BU of 3bx2 by Molmil
Puf4 RNA binding domain bound to HO endonuclease RNA 3' UTR recognition sequence
Descriptor: HO endonuclease 3' UTR binding sequence, Protein PUF4, SODIUM ION, ...
Authors:Miller, M.T, Higgin, J.J, Hall, T.M.T.
Deposit date:2008-01-11
Release date:2008-03-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p
Nat.Struct.Mol.Biol., 15, 2008
3BX3
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BU of 3bx3 by Molmil
Puf4 T650C/C724R Mutant bound to Cox17 RNA 3' UTR recognition sequence
Descriptor: COX17 RNA target sequence, Protein PUF4, SULFATE ION
Authors:Miller, M.T, Higgin, J.J, Hall, T.M.T.
Deposit date:2008-01-11
Release date:2008-03-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3 Å)
Cite:Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p
Nat.Struct.Mol.Biol., 15, 2008
1M8Y
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BU of 1m8y by Molmil
CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH NRE2-10 RNA
Descriptor: 5'-R(P*AP*UP*UP*GP*UP*AP*CP*AP*UP*A)-3', Pumilio 1
Authors:Wang, X, McLachlan, J, Zamore, P.D, Hall, T.M.T.
Deposit date:2002-07-26
Release date:2002-09-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:MODULAR RECOGNITION OF RNA BY A HUMAN PUMILIO-HOMOLOGY DOMAIN
CELL(CAMBRIDGE,MASS.), 110, 2002
1M8W
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BU of 1m8w by Molmil
CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH NRE1-19 RNA
Descriptor: 5'-R(P*UP*GP*UP*AP*UP*AP*U)-3', 5'-R(P*UP*GP*UP*CP*CP*AP*G)-3', 5'-R(P*UP*UP*GP*UP*AP*UP*AP*U)-3', ...
Authors:Wang, X, McLachlan, J, Zamore, P.D, Hall, T.M.T.
Deposit date:2002-07-26
Release date:2002-09-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:MODULAR RECOGNITION OF RNA BY A HUMAN PUMILIO-HOMOLOGY DOMAIN
CELL(CAMBRIDGE,MASS.), 110, 2002
1M8X
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BU of 1m8x by Molmil
CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH NRE1-14 RNA
Descriptor: 5'-R(P*UP*GP*UP*AP*UP*AP*U)-3', 5'-R(P*UP*UP*GP*UP*AP*UP*AP*U)-3', Pumilio 1
Authors:Wang, X, McLachlan, J, Zamore, P.D, Hall, T.M.T.
Deposit date:2002-07-26
Release date:2002-09-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:MODULAR RECOGNITION OF RNA BY A HUMAN PUMILIO-HOMOLOGY DOMAIN
CELL(CAMBRIDGE,MASS.), 110, 2002
7RZZ
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BU of 7rzz by Molmil
Crystal structure of FBF-2 in complex with LST-1 site A peptide and compact FBE RNA
Descriptor: Fem-3 mRNA-binding factor 2, Lateral Signaling Target, RNA
Authors:Qiu, C, Hall, T.M.T.
Deposit date:2021-08-28
Release date:2022-04-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Bipartite interaction sites differentially modulate RNA-binding affinity of a protein complex essential for germline stem cell self-renewal.
Nucleic Acids Res., 50, 2022
7S02
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BU of 7s02 by Molmil
Crystal structure of FBF-2 in complex with LST-1 site A peptide and FBE RNA
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, FBE RNA, ...
Authors:Qiu, C, Hall, T.M.T.
Deposit date:2021-08-28
Release date:2021-12-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Bipartite interaction sites differentially modulate RNA-binding affinity of a protein complex essential for germline stem cell self-renewal.
Nucleic Acids Res., 50, 2022
3V6Y
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BU of 3v6y by Molmil
crystal structure of FBF-2 in complex with a mutant gld-1 FBEa13 RNA
Descriptor: Fem-3 mRNA-binding factor 2, RNA (5'-R(*UP*AP*CP*UP*GP*UP*GP*CP*CP*AP*UP*AP*C)-3')
Authors:Qiu, C, Kershner, A, Wang, Y, Holley, C.H, Wilinski, D, Keles, S, Kimble, J, Wickens, M, Hall, T.M.T.
Deposit date:2011-12-20
Release date:2012-01-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Divergence of PUF protein specificity through variations in an RNA-binding pocket
J.Biol.Chem., 2012
3V74
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BU of 3v74 by Molmil
crystal structure of FBF-2 in complex with gld-1 FBEa13 RNA
Descriptor: Fem-3 mRNA-binding factor 2, RNA (5'-R(*UP*CP*AP*UP*GP*UP*GP*CP*CP*AP*UP*AP*C)-3')
Authors:Wang, Y, Qiu, C, Kershner, A, Holley, C.P, Wilinski, D, Keles, S, Kimble, J, Wickens, M, Hall, T.M.T.
Deposit date:2011-12-20
Release date:2012-01-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Divergence of PUF protein specificity through variations in an RNA-binding pocket
J.Biol.Chem., 2012
3V71
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BU of 3v71 by Molmil
Crystal structure of PUF-6 in complex with 5BE13 RNA
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Puf (Pumilio/fbf) domain-containing protein 7, confirmed by transcript evidence, ...
Authors:Qiu, C, Kershner, A, Wang, Y, Holley, C.H, Wilinski, D, Keles, S, Kimble, J, Wickens, M, Hall, T.M.T.
Deposit date:2011-12-20
Release date:2012-01-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.902 Å)
Cite:Divergence of PUF protein specificity through variations in an RNA-binding pocket
J.Biol.Chem., 2012
7LWZ
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BU of 7lwz by Molmil
Apo Structure of Vibrio cholerae dGTPase protein VC1979
Descriptor: Deoxyguanosinetriphosphate triphosphohydrolase-like protein 1, NICKEL (II) ION
Authors:Sikkema, A.P, Horng, J, Klemm, B.P, Schaaper, R.M, Hall, T.M.T.
Deposit date:2021-03-02
Release date:2021-03-10
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structure of Vibrio cholerae dGTPase protein VC1979
To Be Published
2KHX
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BU of 2khx by Molmil
Drosha double-stranded RNA binding motif
Descriptor: Ribonuclease 3
Authors:Mueller, G.A, Miller, M, Ghosh, M, DeRose, E.F, London, R.E, Hall, T.
Deposit date:2009-04-13
Release date:2010-02-23
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the Drosha double-stranded RNA-binding domain.
Silence, 1, 2010
4QOZ
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BU of 4qoz by Molmil
Crystal structure of the histone mRNA stem-loop, stem-loop binding protein (phosphorylated), and 3'hExo ternary complex
Descriptor: 3'-5' exoribonuclease 1, Histone RNA hairpin-binding protein, histone mRNA stem-loop
Authors:Tan, D, Tong, L.
Deposit date:2014-06-21
Release date:2014-07-23
Last modified:2014-08-06
Method:X-RAY DIFFRACTION (2.304 Å)
Cite:Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation.
Proc.Natl.Acad.Sci.USA, 111, 2014
4TUW
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BU of 4tuw by Molmil
drosophila stem-loop binding protein complexed with histone mRNA stem-loop, phospho mimic of TPNK and C-terminal region
Descriptor: CALCIUM ION, HISTONE MRNA 3' STEM LOOP, Histone RNA hairpin-binding protein
Authors:Zhang, J.
Deposit date:2014-06-25
Release date:2014-07-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.902 Å)
Cite:Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation.
Proc.Natl.Acad.Sci.USA, 111, 2014
4TV0
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BU of 4tv0 by Molmil
Drosophila stem-loop binding protein complexed with histone mRNA stem-loop, Selenomethionine derivative
Descriptor: CALCIUM ION, Histone RNA hairpin-binding protein, RNA (26-MER)
Authors:Zhang, J.
Deposit date:2014-06-25
Release date:2014-09-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation.
Proc.Natl.Acad.Sci.USA, 111, 2014
4TUX
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BU of 4tux by Molmil
drosophila stem-loop binding protein complexed with histone mRNA stem-loop
Descriptor: CALCIUM ION, Histone RNA hairpin-binding protein, RNA (26-MER)
Authors:Zhang, J.
Deposit date:2014-06-25
Release date:2014-07-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation.
Proc.Natl.Acad.Sci.USA, 111, 2014
5SVD
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BU of 5svd by Molmil
Nop9, a new PUF-like protein, prevents premature pre-rRNA cleavage to correctly process mature 18S rRNA
Descriptor: Nucleolar protein 9
Authors:Zhang, J, Qiu, C, Hall, T.
Deposit date:2016-08-05
Release date:2016-10-26
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Nop9 is a PUF-like protein that prevents premature cleavage to correctly process pre-18S rRNA.
Nat Commun, 7, 2016
5T9P
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BU of 5t9p by Molmil
Structural analysis reveals the flexible C-terminus of Nop15 undergoes rearrangement to recognize a pre-ribosomal RNA folding intermediate
Descriptor: CHLORIDE ION, Ribosome biogenesis protein 15, SULFATE ION
Authors:Zhang, J, Gonzalez, E.L, Hall, M.T.T.
Deposit date:2016-09-09
Release date:2016-11-16
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural analysis reveals the flexible C-terminus of Nop15 undergoes rearrangement to recognize a pre-ribosomal RNA folding intermediate.
Nucleic Acids Res., 45, 2017
7TU6
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BU of 7tu6 by Molmil
Structure of the L. blandensis dGTPase bound to dATP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, MAGNESIUM ION, dGTP triphosphohydrolase
Authors:Klemm, B.P, Sikkema, A.P, Hsu, A.L, Borgnia, M.J, Schaaper, R.M.
Deposit date:2022-02-02
Release date:2022-06-01
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:High-resolution structures of the SAMHD1 dGTPase homolog from Leeuwenhoekiella blandensis reveal a novel mechanism of allosteric activation by dATP.
J.Biol.Chem., 298, 2022
7TU7
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BU of 7tu7 by Molmil
Structure of the L. blandensis dGTPase H125A mutant bound to dGTP
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, dGTP triphosphohydrolase
Authors:Klemm, B.P, Sikkema, A.P, Hsu, A.L, Borgnia, M.J, Schaaper, R.M.
Deposit date:2022-02-02
Release date:2022-06-01
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:High-resolution structures of the SAMHD1 dGTPase homolog from Leeuwenhoekiella blandensis reveal a novel mechanism of allosteric activation by dATP.
J.Biol.Chem., 298, 2022
7TU8
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BU of 7tu8 by Molmil
Structure of the L. blandensis dGTPase H125A mutant bound to dGTP and dATP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Klemm, B.P, Sikkema, A.P, Hsu, A.L, Borgnia, M.J, Schaaper, R.M.
Deposit date:2022-02-02
Release date:2022-06-01
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:High-resolution structures of the SAMHD1 dGTPase homolog from Leeuwenhoekiella blandensis reveal a novel mechanism of allosteric activation by dATP.
J.Biol.Chem., 298, 2022
7TU5
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BU of 7tu5 by Molmil
Structure of the L. blandensis dGTPase in the apo form
Descriptor: MAGNESIUM ION, dGTP triphosphohydrolase
Authors:Klemm, B.P, Sikkema, A.P, Hsu, A.L, Borgnia, M.J, Schaaper, R.M.
Deposit date:2022-02-02
Release date:2022-06-01
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (2.1 Å)
Cite:High-resolution structures of the SAMHD1 dGTPase homolog from Leeuwenhoekiella blandensis reveal a novel mechanism of allosteric activation by dATP.
J.Biol.Chem., 298, 2022
6RMT
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BU of 6rmt by Molmil
Crystal structure of disulphide-linked human C3d dimer
Descriptor: CHLORIDE ION, Complement C3
Authors:Wahid, A.A, van den Elsen, J.M.H, Crennell, S.J.
Deposit date:2019-05-07
Release date:2020-11-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Insights Into the Structure-Function Relationships of Dimeric C3d Fragments.
Front Immunol, 12, 2021
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PDB entries from 2024-09-11

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