Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7DU4
DownloadVisualize
BU of 7du4 by Molmil
The structure of the M.tb MazF-mt9 toxin in complex with a fragment of cognate antitoxin
Descriptor: Probable endoribonuclease MazF7, peptide
Authors:Xie, W, Chen, R.
Deposit date:2021-01-08
Release date:2022-01-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Mechanistic Insight into the Peptide Binding Modes to Two M. tb MazF Toxins.
Toxins, 13, 2021
7DU5
DownloadVisualize
BU of 7du5 by Molmil
The structure of the M.tb MazF-mt1 toxin in complex with a fragment of cognate antitoxin
Descriptor: A fragment of MazE-mt1, Endoribonuclease MazF9
Authors:Xie, W, Chen, R.
Deposit date:2021-01-08
Release date:2022-01-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Mechanistic Insight into the Peptide Binding Modes to Two M. tb MazF Toxins.
Toxins, 13, 2021
5THL
DownloadVisualize
BU of 5thl by Molmil
Crystal structure of the human tyrosyl-tRNA synthetase mutant G41R
Descriptor: Tyrosine--tRNA ligase, cytoplasmic
Authors:Blocquel, D, Sajish, M, Yang, X.L.
Deposit date:2016-09-29
Release date:2017-06-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Alternative stable conformation capable of protein misinteraction links tRNA synthetase to peripheral neuropathy.
Nucleic Acids Res., 45, 2017
5THH
DownloadVisualize
BU of 5thh by Molmil
Crystal structure of a human tyrosyl-tRNA synthetase mutant
Descriptor: TYROSINE, Tyrosine--tRNA ligase, cytoplasmic
Authors:Blocquel, D, Yang, X.L.
Deposit date:2016-09-29
Release date:2017-05-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.959 Å)
Cite:Alternative stable conformation capable of protein misinteraction links tRNA synthetase to peripheral neuropathy.
Nucleic Acids Res., 45, 2017
7EPW
DownloadVisualize
BU of 7epw by Molmil
Crystal structure of monooxygenase Tet(X4) with tigecycline
Descriptor: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, Flavin-dependent monooxygenase, TIGECYCLINE
Authors:Cheng, Q, Chen, S.
Deposit date:2021-04-28
Release date:2021-11-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Structural and mechanistic basis of the high catalytic activity of monooxygenase Tet(X4) on tigecycline.
Bmc Biol., 19, 2021
7EPV
DownloadVisualize
BU of 7epv by Molmil
Crystal structure of tigecycline degrading monooxygenase Tet(X4)
Descriptor: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, Flavin-dependent monooxygenase, GLYCEROL
Authors:Cheng, Q, Chen, S.
Deposit date:2021-04-27
Release date:2021-11-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural and mechanistic basis of the high catalytic activity of monooxygenase Tet(X4) on tigecycline.
Bmc Biol., 19, 2021
3UIM
DownloadVisualize
BU of 3uim by Molmil
Structural basis for the impact of phosphorylation on plant receptor-like kinase BAK1 activation
Descriptor: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Lou, Z.Y, Yan, L.M, Ma, Y.Y.
Deposit date:2011-11-05
Release date:2012-05-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for the impact of phosphorylation on the activation of plant receptor-like kinase BAK1
Cell Res., 22, 2012
2OCI
DownloadVisualize
BU of 2oci by Molmil
Crystal structure of valacyclovir hydrolase complexed with a product analogue
Descriptor: L-TYROSINAMIDE, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Lai, L, Xu, Z, Amidon, G.L.
Deposit date:2006-12-20
Release date:2008-02-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular basis of prodrug activation by human valacyclovirase, an alpha-amino acid ester hydrolase.
J.Biol.Chem., 283, 2008
2OCK
DownloadVisualize
BU of 2ock by Molmil
Crystal structure of valacyclovir hydrolase D123N mutant
Descriptor: MAGNESIUM ION, MANGANESE (II) ION, Valacyclovir hydrolase
Authors:Lai, L, Xu, Z, Amidon, G.L.
Deposit date:2006-12-20
Release date:2008-02-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Molecular basis of prodrug activation by human valacyclovirase, an alpha-amino acid ester hydrolase.
J.Biol.Chem., 283, 2008
2OCL
DownloadVisualize
BU of 2ocl by Molmil
Crystal structure of valacyclovir hydrolase S122A mutant
Descriptor: MAGNESIUM ION, MANGANESE (II) ION, Valacyclovir hydrolase
Authors:Lai, L, Xu, Z, Amidon, G.L.
Deposit date:2006-12-20
Release date:2008-02-05
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular basis of prodrug activation by human valacyclovirase, an alpha-amino acid ester hydrolase.
J.Biol.Chem., 283, 2008
2OCG
DownloadVisualize
BU of 2ocg by Molmil
Crystal structure of human valacyclovir hydrolase
Descriptor: GLYCEROL, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Lai, L, Xu, Z, Amidon, G.L.
Deposit date:2006-12-20
Release date:2008-02-05
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Molecular basis of prodrug activation by human valacyclovirase, an alpha-amino acid ester hydrolase.
J.Biol.Chem., 283, 2008
5CT7
DownloadVisualize
BU of 5ct7 by Molmil
BRAF in Complex with RAF265
Descriptor: 1-methyl-5-({2-[5-(trifluoromethyl)-1H-imidazol-2-yl]pyridin-4-yl}oxy)-N-[4-(trifluoromethyl)phenyl]-1H-benzimidazol-2-amine, Serine/threonine-protein kinase B-raf
Authors:Appleton, B.A.
Deposit date:2015-07-23
Release date:2015-09-09
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:Discovery of RAF265: A Potent mut-B-RAF Inhibitor for the Treatment of Metastatic Melanoma.
Acs Med.Chem.Lett., 6, 2015
5VR4
DownloadVisualize
BU of 5vr4 by Molmil
RNA octamer containing 2'-F-4'-OMe U.
Descriptor: COBALT TETRAAMMINE ION, RNA (5'-R(*CP*GP*AP*AP*(UMO)P*UP*CP*G)-3')
Authors:Harp, J.M, Egli, M.
Deposit date:2017-05-10
Release date:2017-10-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:4'-C-Methoxy-2'-deoxy-2'-fluoro Modified Ribonucleotides Improve Metabolic Stability and Elicit Efficient RNAi-Mediated Gene Silencing.
J. Am. Chem. Soc., 139, 2017
6MBD
DownloadVisualize
BU of 6mbd by Molmil
Human Mcl-1 in complex with the designed peptide dM1
Descriptor: Induced myeloid leukemia cell differentiation protein Mcl-1, ZINC ION, dM1
Authors:Jenson, J.M, Keating, A.E.
Deposit date:2018-08-29
Release date:2019-03-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Tertiary Structural Motif Sequence Statistics Enable Facile Prediction and Design of Peptides that Bind Anti-apoptotic Bfl-1 and Mcl-1.
Structure, 27, 2019
6MBC
DownloadVisualize
BU of 6mbc by Molmil
Human Bfl-1 in complex with the designed peptide dF4
Descriptor: Bcl-2-related protein A1, dF4
Authors:Jenson, J.M, Keating, A.E.
Deposit date:2018-08-29
Release date:2019-03-06
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (1.752 Å)
Cite:Tertiary Structural Motif Sequence Statistics Enable Facile Prediction and Design of Peptides that Bind Anti-apoptotic Bfl-1 and Mcl-1.
Structure, 27, 2019
6LPE
DownloadVisualize
BU of 6lpe by Molmil
Phascolosoma esculenta ferritin
Descriptor: Ferritin, MAGNESIUM ION, SULFATE ION
Authors:Su, X.R, Ming, T.H.
Deposit date:2020-01-10
Release date:2021-02-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural comparison of two ferritins from the marine invertebrate Phascolosoma esculenta.
Febs Open Bio, 11, 2021
1D4B
DownloadVisualize
BU of 1d4b by Molmil
CIDE-N DOMAIN OF HUMAN CIDE-B
Descriptor: HUMAN CELL DEATH-INDUCING EFFECTOR B
Authors:Lugovskoy, A, Zhou, P, Chou, J, McCarty, J, Li, P, Wagner, G.
Deposit date:1999-10-02
Release date:1999-12-17
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the CIDE-N domain of CIDE-B and a model for CIDE-N/CIDE-N interactions in the DNA fragmentation pathway of apoptosis.
Cell(Cambridge,Mass.), 99, 1999
6LP5
DownloadVisualize
BU of 6lp5 by Molmil
Structure of Sinonovacula constricta ferritin
Descriptor: FE (II) ION, FE (III) ION, Ferritin, ...
Authors:Su, X.R, Ming, T.H, Su, C.
Deposit date:2020-01-08
Release date:2020-04-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystallographic characterization of ferritin from Sinonovacula constricta.
Biochem.Biophys.Res.Commun., 524, 2020
6MBB
DownloadVisualize
BU of 6mbb by Molmil
Human Bfl-1 in complex with the designed peptide dF1
Descriptor: Bcl-2-related protein A1, dF1
Authors:Jenson, J.M, Keating, A.E.
Deposit date:2018-08-29
Release date:2019-03-06
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Tertiary Structural Motif Sequence Statistics Enable Facile Prediction and Design of Peptides that Bind Anti-apoptotic Bfl-1 and Mcl-1.
Structure, 27, 2019
6LPD
DownloadVisualize
BU of 6lpd by Molmil
Phascolosoma esculenta
Descriptor: FE (II) ION, FE (III) ION, Ferritin
Authors:Su, X.R, Ming, T.H.
Deposit date:2020-01-09
Release date:2021-01-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural comparison of two ferritins from the marine invertebrate Phascolosoma esculenta.
Febs Open Bio, 11, 2021
1ZA6
DownloadVisualize
BU of 1za6 by Molmil
The structure of an antitumor CH2-domain-deleted humanized antibody
Descriptor: IGG Heavy chain, IGG Light chain
Authors:Larson, S.B, Day, J.S, Glaser, S, Braslawsky, G, McPherson, A.
Deposit date:2005-04-05
Release date:2005-05-10
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The Structure of an Antitumor C(H)2-domain-deleted Humanized Antibody.
J.Mol.Biol., 348, 2005
7VOA
DownloadVisualize
BU of 7voa by Molmil
Crystal structure of SARS-CoV-2 RBD in complex with aRBD5
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, alpaca nanobody
Authors:Ma, H, Zeng, W.H, Jin, T.C.
Deposit date:2021-10-13
Release date:2022-08-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Hetero-bivalent nanobodies provide broad-spectrum protection against SARS-CoV-2 variants of concern including Omicron.
Cell Res., 32, 2022
2ONM
DownloadVisualize
BU of 2onm by Molmil
Human Mitochondrial Aldehyde Dehydrogenase Asian Variant, ALDH2*2, complexed with NAD+
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Aldehyde dehydrogenase, ...
Authors:Larson, H.N, Hurley, T.D.
Deposit date:2007-01-24
Release date:2007-03-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and functional consequences of coenzyme binding to the inactive asian variant of mitochondrial aldehyde dehydrogenase: roles of residues 475 and 487.
J.Biol.Chem., 282, 2007
2ONN
DownloadVisualize
BU of 2onn by Molmil
Arg475Gln Mutant of Human Mitochondrial Aldehyde Dehydrogenase, Apo form
Descriptor: Aldehyde dehydrogenase
Authors:Larson, H.N, Hurley, T.D.
Deposit date:2007-01-24
Release date:2007-03-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural and functional consequences of coenzyme binding to the inactive asian variant of mitochondrial aldehyde dehydrogenase: roles of residues 475 and 487.
J.Biol.Chem., 282, 2007
7V6V
DownloadVisualize
BU of 7v6v by Molmil
trimolecular G-quadruplexes consists of a hairpin motif and two short chains
Descriptor: DNA (5'-D(*CP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3'), DNA (5'-D(*TP*GP*GP*GP*A)-3')
Authors:Zhang, N, Jing, H.T, Hu, W.X.
Deposit date:2021-08-20
Release date:2023-02-08
Last modified:2024-05-15
Method:SOLID-STATE NMR
Cite:Conversion to Trimolecular G-Quadruplex by Spontaneous Hoogsteen Pairing-Based Strand Displacement Reaction between Bimolecular G-Quadruplex and Double G-Rich Probes.
J.Am.Chem.Soc., 2023

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon