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Crystal structure of human UBC4 E2 conjugating enzyme
Descriptor:	Ubiquitin-conjugating enzyme E2 D2
Authors:	Benirschke, R, Thompson, J.R, Mer, G.
Deposit date:	2009-12-14
Release date:	2010-05-05
Last modified:	2023-09-06
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Molecular Basis for the Association of Human E4B U Box Ubiquitin Ligase with E2-Conjugating Enzymes UbcH5c and Ubc4. Structure, 18, 2010

6CO1

Structure of human TIRR in complex with 53BP1 Tudor domains
Descriptor:	TP53-binding protein 1, Tudor-interacting repair regulator protein
Authors:	Cui, G, Botuyan, M.V, Mer, G.
Deposit date:	2018-03-10
Release date:	2018-06-06
Last modified:	2023-10-04
Method:	X-RAY DIFFRACTION (2.179 Å)
Cite:	Mechanism of 53BP1 activity regulation by RNA-binding TIRR and a designer protein. Nat. Struct. Mol. Biol., 25, 2018

6D0L

Structure of human TIRR
Descriptor:	Tudor-interacting repair regulator protein
Authors:	Cui, G, Botuyan, M.V, Mer, G.
Deposit date:	2018-04-10
Release date:	2018-06-06
Last modified:	2023-10-04
Method:	X-RAY DIFFRACTION (1.97 Å)
Cite:	Mechanism of 53BP1 activity regulation by RNA-binding TIRR and a designer protein. Nat. Struct. Mol. Biol., 25, 2018

5VF0

Solution NMR structure of human RAD18 (198-240) in complex with ubiquitin
Descriptor:	E3 ubiquitin-protein ligase RAD18, Polyubiquitin-B, ZINC ION
Authors:	Hu, Q, Botuyan, M.V, Mer, G.
Deposit date:	2017-04-06
Release date:	2017-05-17
Last modified:	2024-05-15
Method:	SOLUTION NMR
Cite:	Mechanisms of Ubiquitin-Nucleosome Recognition and Regulation of 53BP1 Chromatin Recruitment by RNF168/169 and RAD18. Mol. Cell, 66, 2017

6VE5

X-ray structure of human REV7 in complex with Shieldin3 (residues 41-74)
Descriptor:	Mitotic spindle assembly checkpoint protein MAD2B, SULFATE ION, Shieldin complex subunit 3
Authors:	Cui, G, Botuyan, M.V, Mer, G.
Deposit date:	2019-12-28
Release date:	2021-01-13
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Cryo-EM reveals conformational flexibility in apo DNA polymerase zeta. J.Biol.Chem., 297, 2021

5VZM

Solution NMR structure of human Rev1 (932-1039) in complex with ubiquitin
Descriptor:	DNA repair protein REV1, Ubiquitin
Authors:	Cui, G, Botuyan, M.V, Mer, G.
Deposit date:	2017-05-29
Release date:	2018-05-23
Last modified:	2019-12-04
Method:	SOLUTION NMR
Cite:	Structural Basis for the Interaction of Mutasome Assembly Factor REV1 with Ubiquitin. J. Mol. Biol., 430, 2018

7LYC

Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A Lys13 and Lys15 in complex with BARD1 (residues 415-777)
Descriptor:	BRCA1-associated RING domain protein 1, DNA (146-MER), DNA (147-MER), ...
Authors:	Hu, Q, Botuyan, M.V, Zhao, D, Cui, D, Mer, E, Mer, G.
Deposit date:	2021-03-06
Release date:	2021-06-16
Last modified:	2021-09-01
Method:	ELECTRON MICROSCOPY (2.94 Å)
Cite:	Mechanisms of BRCA1-BARD1 nucleosome recognition and ubiquitylation. Nature, 596, 2021

7LYA

Cryo-EM structure of the human nucleosome core particle with linked histone proteins H2A and H2B
Descriptor:	DNA (146-MER), DNA (147-MER), Histone H2A type 1-B/E, ...
Authors:	Hu, Q, Botuyan, M.V, Zhao, D, Cui, D, Mer, E, Mer, G.
Deposit date:	2021-03-06
Release date:	2021-07-28
Last modified:	2021-09-01
Method:	ELECTRON MICROSCOPY (2.91 Å)
Cite:	Mechanisms of BRCA1-BARD1 nucleosome recognition and ubiquitylation. Nature, 596, 2021

7LYB

Cryo-EM structure of the human nucleosome core particle in complex with BRCA1-BARD1-UbcH5c
Descriptor:	BRCA1-associated RING domain protein 1, DNA (146-MER), DNA (147-MER), ...
Authors:	Hu, Q, Botuyan, M.V, Zhao, D, Cui, D, Mer, E, Mer, G.
Deposit date:	2021-03-06
Release date:	2021-07-28
Last modified:	2021-09-01
Method:	ELECTRON MICROSCOPY (3.28 Å)
Cite:	Mechanisms of BRCA1-BARD1 nucleosome recognition and ubiquitylation. Nature, 596, 2021

3P8D

Crystal structure of the second Tudor domain of human PHF20 (homodimer form)
Descriptor:	Medulloblastoma antigen MU-MB-50.72
Authors:	Cui, G, Lee, J, Thompson, J.R, Botuyan, M.V, Mer, G.
Deposit date:	2010-10-13
Release date:	2011-06-22
Last modified:	2012-09-26
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	PHF20 is an effector protein of p53 double lysine methylation that stabilizes and activates p53. Nat.Struct.Mol.Biol., 19, 2012

3PD7

Crystal Structure of the Sixth BRCT Domain of Human TopBP1
Descriptor:	DNA topoisomerase 2-binding protein 1
Authors:	Lee, J, Xu, C, Cui, G, Thompson, J.R, Mer, G.
Deposit date:	2010-10-22
Release date:	2010-12-08
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (1.26 Å)
Cite:	Crystal Structure of the Sixth BRCT Domain of Human TopBP1 To be Published

3FSS

Structure of the tandem PH domains of Rtt106
Descriptor:	GLYCEROL, Histone chaperone RTT106, MALONIC ACID
Authors:	Su, D, Thompson, J.R, Mer, G.
Deposit date:	2009-01-11
Release date:	2009-12-22
Last modified:	2021-10-20
Method:	X-RAY DIFFRACTION (1.432 Å)
Cite:	Structural basis for recognition of H3K56-acetylated histone H3-H4 by the chaperone Rtt106. Nature, 483, 2012

5VWE

Solution NMR structure of the HMG domain of human FACT complex subunit SSRP1
Descriptor:	FACT complex subunit SSRP1
Authors:	Hu, Q, Botuyan, M.V, Mer, G.
Deposit date:	2017-05-21
Release date:	2018-05-23
Last modified:	2024-05-15
Method:	SOLUTION NMR
Cite:	Solution NMR structure of the HMG domain of human FACT complex subunit SSRP1 To Be Published

2K2W

Second BRCT domain of NBS1
Descriptor:	Recombination and DNA repair protein
Authors:	Xu, C, Cui, G, Botuyan, M, Mer, G.
Deposit date:	2008-04-14
Release date:	2008-06-17
Last modified:	2024-05-29
Method:	SOLUTION NMR
Cite:	Structure of a second BRCT domain identified in the nijmegen breakage syndrome protein Nbs1 and its function in an MDC1-dependent localization of Nbs1 to DNA damage sites. J.Mol.Biol., 381, 2008

2KTF

Solution NMR structure of human polymerase iota UBM2 in complex with ubiquitin
Descriptor:	DNA polymerase iota, Ubiquitin
Authors:	Cui, G, Benirschke, R, Mer, G.
Deposit date:	2010-02-01
Release date:	2010-11-03
Last modified:	2024-05-01
Method:	SOLUTION NMR
Cite:	Structural Basis of Ubiquitin Recognition by Translesion Synthesis DNA Polymerase iota. Biochemistry, 49, 2010

3PA6

Structure of the N-terminal BRCT domain of human microcephalin (MCPH1)
Descriptor:	CHLORIDE ION, Microcephalin
Authors:	Singh, N, Heroux, A, Thompson, J.R, Mer, G.
Deposit date:	2010-10-18
Release date:	2010-12-08
Last modified:	2017-11-08
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	Structure of the N-terminal BRCT domain of human microcephalin (MCPH1) To be Published

2L0F

Solution NMR structure of human polymerase iota UBM2 (P692A mutant) in complex with ubiquitin
Descriptor:	DNA polymerase iota, Ubiquitin
Authors:	Cui, G, Benirschke, R, Mer, G.
Deposit date:	2010-07-01
Release date:	2010-11-03
Last modified:	2024-05-01
Method:	SOLUTION NMR
Cite:	Structural Basis of Ubiquitin Recognition by Translesion Synthesis DNA Polymerase iota. Biochemistry, 49, 2010

2L0G

Solution NMR structure of ubiquitin-binding motif (UBM2) of human polymerase iota
Descriptor:	DNA polymerase iota
Authors:	Cui, G, Benirschke, R, Mer, G.
Deposit date:	2010-07-01
Release date:	2010-11-03
Last modified:	2024-05-01
Method:	SOLUTION NMR
Cite:	Structural Basis of Ubiquitin Recognition by Translesion Synthesis DNA Polymerase iota. Biochemistry, 49, 2010

2LH9

NMR structure of the first lotus domain of tudor domain-containing protein 7
Descriptor:	Tudor domain-containing protein 7
Authors:	Cui, G, Botuyan, M, Mer, G.
Deposit date:	2011-08-06
Release date:	2012-08-08
Last modified:	2024-05-01
Method:	SOLUTION NMR
Cite:	NMR structure of Tudor domain-containing protein 7 To be Published

2LDM

Solution structure of human PHF20 Tudor2 domain bound to a p53 segment containing a dimethyllysine analog p53K370me2
Descriptor:	Uncharacterized protein
Authors:	Cui, G, Botuyan, M, Mer, G.
Deposit date:	2011-05-30
Release date:	2012-05-30
Last modified:	2023-11-15
Method:	SOLUTION NMR
Cite:	PHF20 is an effector protein of p53 double lysine methylation that stabilizes and activates p53. Nat.Struct.Mol.Biol., 19, 2012

2LH0

NMR structure of the histone-interacting N-terminal homodimeric region of Rtt106
Descriptor:	Histone chaperone RTT106
Authors:	Hu, Q, Cui, G, Mer, G.
Deposit date:	2011-08-04
Release date:	2012-02-01
Last modified:	2024-05-01
Method:	SOLUTION NMR
Cite:	Structural basis for recognition of H3K56-acetylated histone H3-H4 by the chaperone Rtt106. Nature, 483, 2012

2QQS

JMJD2A tandem tudor domains in complex with a trimethylated histone H4-K20 peptide
Descriptor:	JmjC domain-containing histone demethylation protein 3A, METHYLATED HISTONE H4 PEPTIDE
Authors:	Lee, J, Botuyan, M.V, Mer, G.
Deposit date:	2007-07-26
Release date:	2007-12-11
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (2.82 Å)
Cite:	Distinct binding modes specify the recognition of methylated histones H3K4 and H4K20 by JMJD2A-tudor. Nat.Struct.Mol.Biol., 15, 2008

2LVM

Solution structure of human 53BP1 tandem Tudor domains in complex with a histone H4K20me2 peptide
Descriptor:	Histone H4, Tumor suppressor p53-binding protein 1
Authors:	Cui, G, Botuyan, M, Mer, G.
Deposit date:	2012-07-07
Release date:	2012-12-12
Last modified:	2013-04-03
Method:	SOLUTION NMR
Cite:	Acetylation limits 53BP1 association with damaged chromatin to promote homologous recombination. Nat.Struct.Mol.Biol., 20, 2013

2LY1

NMR structure of the second and third lotus domains of tudor domain-containing protein 7 (NMR ensemble overlay for Lotus #2)
Descriptor:	Tudor domain-containing protein 7
Authors:	Cui, G, Botuyan, M, Mer, G.
Deposit date:	2012-09-10
Release date:	2013-09-11
Last modified:	2024-05-01
Method:	SOLUTION NMR
Cite:	NMR structure of the second and third lotus domains of tudor domain-containing protein 7 To be Published

2LY2

NMR structure of the second and third lotus domains of tudor domain-containing protein 7 (NMR ensemble overlay for Lotus #3)
Descriptor:	Tudor domain-containing protein 7
Authors:	Cui, G, Botuyan, M, Mer, G.
Deposit date:	2012-09-10
Release date:	2013-09-11
Last modified:	2024-05-01
Method:	SOLUTION NMR
Cite:	NMR structure of the second and third lotus domains of tudor domain-containing protein 7 To be Published

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