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6XW6
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BU of 6xw6 by Molmil
Crystal structure of murine norovirus P domain in complex with Nanobody NB-5853
Descriptor: 1,2-ETHANEDIOL, Capsid protein, MAGNESIUM ION, ...
Authors:Kilic, T, Sabin, C, Hansman, G.
Deposit date:2020-01-23
Release date:2020-04-22
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Nanobody-Mediated Neutralization Reveals an Achilles Heel for Norovirus.
J.Virol., 94, 2020
8V9A
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BU of 8v9a by Molmil
GII.NA1 Loreto 1257 norovirus protruding domain
Descriptor: 1,2-ETHANEDIOL, Capsid protein VP1
Authors:Kher, G, Kim, I, Pancera, M, Hansman, G.
Deposit date:2023-12-07
Release date:2024-06-19
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Development of a broad-spectrum therapeutic Fc-nanobody for human noroviruses.
J.Virol., 98, 2024
8V97
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BU of 8v97 by Molmil
GII.17 CS-E1 norovirus protruding domain
Descriptor: 1,2-ETHANEDIOL, Capsid protein VP1, DI(HYDROXYETHYL)ETHER
Authors:Kher, G, Prewitt, A, Pancera, M, Hansman, G.
Deposit date:2023-12-07
Release date:2024-06-19
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Development of a broad-spectrum therapeutic Fc-nanobody for human noroviruses.
J.Virol., 98, 2024
8V96
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BU of 8v96 by Molmil
GII.14 M7 norovirus protruding domain
Descriptor: 1,2-ETHANEDIOL, Capsid protein VP1
Authors:Kher, G, Prewitt, A, Pancera, M, Hansman, G.
Deposit date:2023-12-07
Release date:2024-06-19
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Development of a broad-spectrum therapeutic Fc-nanobody for human noroviruses.
J.Virol., 98, 2024
8V95
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BU of 8v95 by Molmil
GII.8 Amsterdam norovirus protruding domain
Descriptor: 1,2-ETHANEDIOL, Capsid protein (Fragment)
Authors:Kher, G, Prewitt, A, Pancera, M, Hansman, G.
Deposit date:2023-12-07
Release date:2024-06-19
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Development of a broad-spectrum therapeutic Fc-nanobody for human noroviruses.
J.Virol., 98, 2024
4M5F
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BU of 4m5f by Molmil
complex structure of Tse3-Tsi3
Descriptor: CALCIUM ION, PHOSPHATE ION, Uncharacterized protein
Authors:Gu, L.C.
Deposit date:2013-08-08
Release date:2014-04-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into the T6SS effector protein Tse3 and the Tse3-Tsi3 complex from Pseudomonas aeruginosa reveal a calcium-dependent membrane-binding mechanism
Mol.Microbiol., 92, 2014
6DUV
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BU of 6duv by Molmil
Crystal structure of the second bromodomain of human BRD4 in complex with MS417 inhibitor
Descriptor: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, methyl [(6S)-4-(4-chlorophenyl)-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl]acetate
Authors:Babault, N, Zhou, M.M.
Deposit date:2018-06-22
Release date:2019-06-26
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Role of Bound Water Molecules in Differential Recognition of Di-Acetylated Histone Peptides by the BRD4 Bromodomains
To be published
8Y9E
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BU of 8y9e by Molmil
Versatile Aromatic Prenyltransferase auraA for Imidazole-Containing Diketopiperazines
Descriptor: Versatile Aromatic Prenyltransferase auraA
Authors:Li, D, Zhang, Y, Wang, W, Wang, P.
Deposit date:2024-02-06
Release date:2025-02-05
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.95 Å)
Cite:Characterization and structural analysis of a versatile aromatic prenyltransferase for imidazole-containing diketopiperazines.
Nat Commun, 16, 2025
8Y7T
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BU of 8y7t by Molmil
Crystal structure of SARS-CoV-2 main protease in complex with C2
Descriptor: 3C-like proteinase nsp5, 6-(iminomethyl)-4-(2-pyridin-2-ylethyl)-2-[4-(trifluoromethyl)phenyl]-1,2,4-triazine-3,5-dione
Authors:Zeng, R, Deng, X.Y, Yang, Z.Y, Wang, K, Jiang, Y.Y, Lei, J.
Deposit date:2024-02-05
Release date:2025-02-05
Last modified:2025-04-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A deep learning model for structure-based bioactivity optimization and its application in the bioactivity optimization of a SARS-CoV-2 main protease inhibitor.
Eur.J.Med.Chem., 291, 2025
8Y9D
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BU of 8y9d by Molmil
Versatile Aromatic Prenyltransferase auraA in complex with DMAPP and cyclo-(L-Val-L-His)
Descriptor: (3~{S},6~{S})-3-(1~{H}-imidazol-4-ylmethyl)-6-propan-2-yl-piperazine-2,5-dione, DIMETHYLALLYL S-THIOLODIPHOSPHATE, Versatile Aromatic Prenyltransferase auraA
Authors:Li, D, Zhang, Y, Wang, W, Wang, P.
Deposit date:2024-02-06
Release date:2025-02-05
Method:ELECTRON MICROSCOPY (2.45 Å)
Cite:Characterization and structural analysis of a versatile aromatic prenyltransferase for imidazole-containing diketopiperazines.
Nat Commun, 16, 2025
8Y7U
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BU of 8y7u by Molmil
Crystal structure of SARS-CoV-2 main protease in complex with C5
Descriptor: 2-(3-fluoro-4-(trifluoromethyl)phenyl)-6-(iminomethyl)-4-(2-oxo-2-(pyridin-2-yl)ethyl)-1,2,4-triazine-3,5(2H,4H)-dione, 3C-like proteinase nsp5
Authors:Zeng, R, Deng, X.Y, Yang, Z.Y, Wang, K, Jiang, Y.Y, Lei, J.
Deposit date:2024-02-05
Release date:2025-02-05
Last modified:2025-04-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A deep learning model for structure-based bioactivity optimization and its application in the bioactivity optimization of a SARS-CoV-2 main protease inhibitor.
Eur.J.Med.Chem., 291, 2025
8Y9G
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BU of 8y9g by Molmil
Versatile Aromatic Prenyltransferase auraA in complex with DMSPP and cyclo-(L-Val-DH-His)
Descriptor: (3~{Z},6~{S})-3-(1~{H}-imidazol-4-ylmethylidene)-6-propan-2-yl-piperazine-2,5-dione, DIMETHYLALLYL S-THIOLODIPHOSPHATE, Versatile Aromatic Prenyltransferase auraA
Authors:Li, D, Zhang, Y, Wang, W, Wang, P.
Deposit date:2024-02-06
Release date:2025-02-05
Method:ELECTRON MICROSCOPY (2.67 Å)
Cite:Characterization and structural analysis of a versatile aromatic prenyltransferase for imidazole-containing diketopiperazines.
Nat Commun, 16, 2025
5WWK
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BU of 5wwk by Molmil
Highly stable green fluorescent protein
Descriptor: Green fluorescent protein
Authors:Sriram, R, George, A, Kesavan, M, Jaimohan, S.M, Kamini, N.R, Easwaramoorthi, S, Ganesh, S, Gunasekaran, K, Ayyadurai, N.
Deposit date:2017-01-02
Release date:2017-12-13
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.199 Å)
Cite:Excited State Electronic Interconversion and Structural Transformation of Engineered Red-Emitting Green Fluorescent Protein Mutant.
J.Phys.Chem.B, 123, 2019
8YWW
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BU of 8yww by Molmil
The structure of HKU1-B S protein with bsAb1
Descriptor: H4B6 heavy chain, H4B6 light chain, Spike glycoprotein, ...
Authors:Xia, L.Y, Zhang, Y.Y, Zhou, Q.
Deposit date:2024-04-01
Release date:2024-07-31
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:A novel bispecific antibody targeting two overlapping epitopes in RBD improves neutralizing potency and breadth against SARS-CoV-2.
Emerg Microbes Infect, 13, 2024
8VRV
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BU of 8vrv by Molmil
GII.4c H2-tri HBGA norovirus protruding domain
Descriptor: 1,2-ETHANEDIOL, Capsid protein, FORMIC ACID, ...
Authors:Kher, G, Prewitt, A, Pancera, M, Hansman, G.
Deposit date:2024-01-22
Release date:2024-06-19
Last modified:2025-01-01
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Development of a broad-spectrum therapeutic Fc-nanobody for human noroviruses.
J.Virol., 98, 2024
8Z6A
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BU of 8z6a by Molmil
Cryo-EM structure of SARS-CoV-2 D614G S with three ACE2 receptors binding (RB3) in prefusion conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Liu, Z, Xing, L.
Deposit date:2024-04-18
Release date:2025-02-05
Last modified:2025-07-23
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Early fusion intermediate of ACE2-using coronavirus spike acting as an antiviral target.
Cell, 188, 2025
8VRU
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BU of 8vru by Molmil
GII.4c apo norovirus protruding domain
Descriptor: 1,2-ETHANEDIOL, Capsid protein, FORMIC ACID
Authors:Kher, G, Prewitt, A, Pancera, M, Hansman, G.
Deposit date:2024-01-22
Release date:2024-06-19
Last modified:2025-01-01
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Development of a broad-spectrum therapeutic Fc-nanobody for human noroviruses.
J.Virol., 98, 2024
8Z7B
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BU of 8z7b by Molmil
Cryo-EM structure of SARS-CoV-2 S trimer in the early fusion intermediate conformation (E-FIC) (focused refinement of NTD-SD1-RBD-ACE2)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Liu, Z, Xing, L.
Deposit date:2024-04-19
Release date:2025-02-05
Last modified:2025-07-23
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Early fusion intermediate of ACE2-using coronavirus spike acting as an antiviral target.
Cell, 188, 2025
8Z7L
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BU of 8z7l by Molmil
Cryo-EM structure of SARS-CoV-2 S trimer in the early fusion intermediate conformation (E-FIC) (focused refinement of S-bottom)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Liu, Z, Xing, L.
Deposit date:2024-04-20
Release date:2025-02-05
Last modified:2025-07-23
Method:ELECTRON MICROSCOPY (3.42 Å)
Cite:Early fusion intermediate of ACE2-using coronavirus spike acting as an antiviral target.
Cell, 188, 2025
8Z7G
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BU of 8z7g by Molmil
Cryo-EM structure of SARS-CoV-2 S trimer in the early fusion intermediate conformation (E-FIC) (focused refinement of intact S2)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Liu, Z, Xing, L.
Deposit date:2024-04-20
Release date:2025-02-05
Last modified:2025-07-23
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Early fusion intermediate of ACE2-using coronavirus spike acting as an antiviral target.
Cell, 188, 2025
8Z64
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BU of 8z64 by Molmil
Cryo-EM structure of SARS-CoV-2 D614G S with three ACE2 receptors binding (RB3) in prefusion conformation (focused refinement of NTD-SD1-RBD-ACE2)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Liu, Z, Xing, L.
Deposit date:2024-04-18
Release date:2025-02-05
Last modified:2025-07-23
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Early fusion intermediate of ACE2-using coronavirus spike acting as an antiviral target.
Cell, 188, 2025
8Z3W
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BU of 8z3w by Molmil
Cryo-EM structure of SARS-CoV-2 D614G S with one ACE2 receptor binding (RB1) in prefusion conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Liu, Z, Xing, L.
Deposit date:2024-04-16
Release date:2025-02-05
Last modified:2025-07-23
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Early fusion intermediate of ACE2-using coronavirus spike acting as an antiviral target.
Cell, 188, 2025
8Z4X
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BU of 8z4x by Molmil
Cryo-EM structure of SARS-CoV-2 D614G S with two ACE2 receptors binding (RB2) in prefusion conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Liu, Z, Xing, L.
Deposit date:2024-04-17
Release date:2025-02-05
Last modified:2025-07-23
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Early fusion intermediate of ACE2-using coronavirus spike acting as an antiviral target.
Cell, 188, 2025
8Z7P
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BU of 8z7p by Molmil
Cryo-EM structure of SARS-CoV-2 S trimer in the early fusion intermediate conformation (E-FIC)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Liu, Z, Xing, L.
Deposit date:2024-04-20
Release date:2025-02-05
Last modified:2025-07-23
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Early fusion intermediate of ACE2-using coronavirus spike acting as an antiviral target.
Cell, 188, 2025
8EN4
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BU of 8en4 by Molmil
Structure of GII.4 norovirus in complex with Nanobody 53
Descriptor: 1,2-ETHANEDIOL, Nanobody 53, VP1
Authors:Kher, G, Sabin, C, Koromyslova, A, Pancera, M, Hansman, G.
Deposit date:2022-09-28
Release date:2023-03-15
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Direct Blockade of the Norovirus Histo-Blood Group Antigen Binding Pocket by Nanobodies.
J.Virol., 97, 2023

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PDB entries from 2025-07-23

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