Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5COS
DownloadVisualize
BU of 5cos by Molmil
Crystal Structure of the Cytoplasmic Domain of the Pseudomonas putida Anti-sigma Factor PupR
Descriptor: Siderophore-interacting protein
Authors:Jensen, J.L, Colbert, C.L.
Deposit date:2015-07-20
Release date:2015-09-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.019 Å)
Cite:Mechanistic Implications of the Unique Structural Features and Dimerization of the Cytoplasmic Domain of the Pseudomonas Sigma Regulator, PupR.
Biochemistry, 54, 2015
3B5Z
DownloadVisualize
BU of 3b5z by Molmil
Crystal Structure of MsbA from Salmonella typhimurium with ADP Vanadate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Lipid A export ATP-binding/permease protein msbA, VANADATE ION
Authors:Ward, A, Reyes, C.L, Yu, J, Roth, C.B, Chang, G.
Deposit date:2007-10-26
Release date:2007-12-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Flexibility in the ABC transporter MsbA: Alternating access with a twist.
Proc.Natl.Acad.Sci.Usa, 104, 2007
3B5W
DownloadVisualize
BU of 3b5w by Molmil
Crystal Structure of Eschericia coli MsbA
Descriptor: Lipid A export ATP-binding/permease protein msbA
Authors:Ward, A, Reyes, C.L, Yu, J, Roth, C.B, Chang, G.
Deposit date:2007-10-26
Release date:2007-12-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (5.3 Å)
Cite:Flexibility in the ABC transporter MsbA: Alternating access with a twist.
Proc.Natl.Acad.Sci.Usa, 104, 2007
5CI2
DownloadVisualize
BU of 5ci2 by Molmil
Ribonucleotide reductase Y122 2,3,6-F3Y variant
Descriptor: MU-OXO-DIIRON, Ribonucleoside-diphosphate reductase 1 subunit beta, SULFATE ION
Authors:Funk, M.A, Drennan, C.L.
Deposit date:2015-07-10
Release date:2016-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Biophysical Characterization of Fluorotyrosine Probes Site-Specifically Incorporated into Enzymes: E. coli Ribonucleotide Reductase As an Example.
J.Am.Chem.Soc., 138, 2016
5CI1
DownloadVisualize
BU of 5ci1 by Molmil
Ribonucleotide reductase Y122 2,3-F2Y variant
Descriptor: CHLORIDE ION, MU-OXO-DIIRON, Ribonucleoside-diphosphate reductase 1, ...
Authors:Funk, M.A, Drennan, C.L.
Deposit date:2015-07-10
Release date:2016-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Biophysical Characterization of Fluorotyrosine Probes Site-Specifically Incorporated into Enzymes: E. coli Ribonucleotide Reductase As an Example.
J.Am.Chem.Soc., 138, 2016
5CJV
DownloadVisualize
BU of 5cjv by Molmil
Isobutyryl-CoA mutase fused with bound adenosylcobalamin, GDP, Mg (holo-IcmF/GDP), and substrate isovaleryl-coenzyme A
Descriptor: 5'-DEOXYADENOSINE, COBALAMIN, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Jost, M, Drennan, C.L.
Deposit date:2015-07-15
Release date:2015-09-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Structural Basis for Substrate Specificity in Adenosylcobalamin-dependent Isobutyryl-CoA Mutase and Related Acyl-CoA Mutases.
J.Biol.Chem., 290, 2015
5CNS
DownloadVisualize
BU of 5cns by Molmil
Crystal structure of the dATP inhibited E. coli class Ia ribonucleotide reductase complex bound to CDP and dATP at 2.97 Angstroms resolution
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2'-DEOXYADENOSINE-5'-DIPHOSPHATE, CYTIDINE-5'-DIPHOSPHATE, ...
Authors:Chen, P.Y.-T, Zimanyi, C.M, Funk, M.A, Drennan, C.L.
Deposit date:2015-07-18
Release date:2016-01-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.975 Å)
Cite:Molecular basis for allosteric specificity regulation in class Ia ribonucleotide reductase from Escherichia coli.
Elife, 5, 2016
5CI0
DownloadVisualize
BU of 5ci0 by Molmil
Ribonucleotide reductase Y122 3,5-F2Y variant
Descriptor: MU-OXO-DIIRON, Ribonucleoside-diphosphate reductase 1, beta subunit, ...
Authors:Funk, M.A, Drennan, C.L.
Deposit date:2015-07-10
Release date:2016-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Biophysical Characterization of Fluorotyrosine Probes Site-Specifically Incorporated into Enzymes: E. coli Ribonucleotide Reductase As an Example.
J.Am.Chem.Soc., 138, 2016
5CNU
DownloadVisualize
BU of 5cnu by Molmil
Crystal structure of the dATP inhibited E. coli class Ia ribonucleotide reductase complex bound to ADP and dGTP at 3.40 Angstroms resolution
Descriptor: 2'-DEOXYADENOSINE-5'-DIPHOSPHATE, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Chen, P.Y.-T, Zimanyi, C.M, Funk, M.A, Drennan, C.L.
Deposit date:2015-07-18
Release date:2016-01-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Molecular basis for allosteric specificity regulation in class Ia ribonucleotide reductase from Escherichia coli.
Elife, 5, 2016
2YCB
DownloadVisualize
BU of 2ycb by Molmil
Structure of the archaeal beta-CASP protein with N-terminal KH domains from Methanothermobacter thermautotrophicus
Descriptor: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Silva, A.P.G, Chechik, M, Byrne, R.T, Waterman, D.G, Ng, C.L, Dodson, E.J, Koonin, E.V, Antson, A.A, Smits, C.
Deposit date:2011-03-13
Release date:2011-05-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure and Activity of a Novel Archaeal Beta-Casp Protein with N-Terminal Kh Domains.
Structure, 19, 2011
5D7F
DownloadVisualize
BU of 5d7f by Molmil
X-ray structure of Ca(2+)-S100B with human RAGE-derived W72 peptide
Descriptor: Advanced glycosylation end product-specific receptor, CALCIUM ION, GLYCEROL, ...
Authors:Jensen, J.L, Colbert, C.L.
Deposit date:2015-08-13
Release date:2016-08-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:X-ray structure of Ca(2+)-S100B with human RAGE-derived W72 peptide
To Be Published
3B5X
DownloadVisualize
BU of 3b5x by Molmil
Crystal Structure of MsbA from Vibrio cholerae
Descriptor: Lipid A export ATP-binding/permease protein msbA
Authors:Ward, A, Reyes, C.L, Yu, J, Roth, C.B, Chang, G.
Deposit date:2007-10-26
Release date:2007-12-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (5.5 Å)
Cite:Flexibility in the ABC transporter MsbA: Alternating access with a twist.
Proc.Natl.Acad.Sci.Usa, 104, 2007
5D08
DownloadVisualize
BU of 5d08 by Molmil
Crystal structure of selenomethionine-labeled epoxyqueuosine reductase
Descriptor: CHLORIDE ION, COBALAMIN, Epoxyqueuosine reductase, ...
Authors:Dowling, D.P, Miles, Z.D, Kohrer, C, Bandarian, V, Drennan, C.L.
Deposit date:2015-08-02
Release date:2016-09-28
Last modified:2019-11-20
Method:X-RAY DIFFRACTION (1.747 Å)
Cite:Molecular basis of cobalamin-dependent RNA modification.
Nucleic Acids Res., 44, 2016
2Z8Y
DownloadVisualize
BU of 2z8y by Molmil
Xenon-bound structure of bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase(CODH/ACS) from Moorella thermoacetica
Descriptor: COPPER (I) ION, Carbon monoxide dehydrogenase/acetyl CoA synthase subunit alpha, Carbon monoxide dehydrogenase/acetyl CoA synthase subunit beta, ...
Authors:Doukov, T.I, Blasiak, L.C, Drennan, C.L.
Deposit date:2007-09-12
Release date:2008-03-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Xenon in and at the End of the Tunnel of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-CoA Synthase
Biochemistry, 47, 2008
5D0B
DownloadVisualize
BU of 5d0b by Molmil
Crystal structure of epoxyqueuosine reductase with a tRNA-TYR epoxyqueuosine-modified tRNA stem loop
Descriptor: COBALAMIN, Epoxyqueuosine reductase, GLYCEROL, ...
Authors:Dowling, D.P, Miles, Z.D, Kohrer, C, Bandarian, V, Drennan, C.L.
Deposit date:2015-08-03
Release date:2016-09-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.645 Å)
Cite:Molecular basis of cobalamin-dependent RNA modification.
Nucleic Acids Res., 44, 2016
4ZWX
DownloadVisualize
BU of 4zwx by Molmil
Engineered Carbonic Anhydrase IX mimic in complex with glucosyl sulfamate inhibitor
Descriptor: (1S)-2,3,4,6-tetra-O-acetyl-1,5-anhydro-1-{[5-(sulfamoyloxy)pentyl]sulfamoyl}-D-allitol, Carbonic anhydrase 2, DIMETHYL SULFOXIDE, ...
Authors:Mahon, B.P, Lomelino, C.L, Salguero, A.L, McKenna, R.
Deposit date:2015-05-19
Release date:2015-10-28
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.696 Å)
Cite:Mapping Selective Inhibition of the Cancer-Related Carbonic Anhydrase IX Using Structure-Activity Relationships of Glucosyl-Based Sulfamates.
J.Med.Chem., 58, 2015
4ZXH
DownloadVisualize
BU of 4zxh by Molmil
Crystal Structure of holo-AB3403 a four domain nonribosomal peptide synthetase from Acinetobacter Baumanii
Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 4'-PHOSPHOPANTETHEINE, ABBFA_003403, ...
Authors:Drake, E.J, Miller, B.R, Allen, C.L, Gulick, A.M.
Deposit date:2015-05-20
Release date:2015-12-30
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures of two distinct conformations of holo-non-ribosomal peptide synthetases.
Nature, 529, 2016
5D0K
DownloadVisualize
BU of 5d0k by Molmil
Structure of UbE2D2:RNF165:Ub complex
Descriptor: Polyubiquitin-B, RING finger protein 165, Ubiquitin-conjugating enzyme E2 D2, ...
Authors:Wright, J.D, Day, C.L, Mace, P.D.
Deposit date:2015-08-03
Release date:2015-12-09
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Secondary ubiquitin-RING docking enhances Arkadia and Ark2C E3 ligase activity.
Nat.Struct.Mol.Biol., 23, 2016
5D0I
DownloadVisualize
BU of 5d0i by Molmil
Structure of RING finger protein 165
Descriptor: RING finger protein 165, SULFATE ION, ZINC ION
Authors:Wright, J.D, Day, C.L, Mace, P.D.
Deposit date:2015-08-03
Release date:2015-12-09
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Secondary ubiquitin-RING docking enhances Arkadia and Ark2C E3 ligase activity.
Nat.Struct.Mol.Biol., 23, 2016
5D0M
DownloadVisualize
BU of 5d0m by Molmil
Structure of UbE2D2:RNF165:Ub complex
Descriptor: PHOSPHATE ION, Polyubiquitin-B, RING finger protein 165, ...
Authors:Wright, J.D, Day, C.L, Mace, P.D.
Deposit date:2015-08-03
Release date:2015-12-09
Last modified:2016-01-20
Method:X-RAY DIFFRACTION (1.913 Å)
Cite:Secondary ubiquitin-RING docking enhances Arkadia and Ark2C E3 ligase activity.
Nat.Struct.Mol.Biol., 23, 2016
3BKT
DownloadVisualize
BU of 3bkt by Molmil
Copper-bound C-terminal Domain of NikR
Descriptor: COPPER (II) ION, Nickel-responsive regulator
Authors:Phillips, C.M, Schreiter, E.R, Drennan, C.L.
Deposit date:2007-12-07
Release date:2008-02-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural Basis of the Metal Specificity for Nickel Regulatory Protein NikR.
Biochemistry, 47, 2008
3BS9
DownloadVisualize
BU of 3bs9 by Molmil
X-ray structure of human TIA-1 RRM2
Descriptor: IODIDE ION, Nucleolysin TIA-1 isoform p40
Authors:Kumar, A.O, Kielkopf, C.L.
Deposit date:2007-12-22
Release date:2008-01-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of the central RNA recognition motif of human TIA-1 at 1.95A resolution.
Biochem.Biophys.Res.Commun., 367, 2008
5DG5
DownloadVisualize
BU of 5dg5 by Molmil
CRYSTAL STRUCTURE OF THE TYROSINE KINASE DOMAIN OF THE HEPATOCYTE GROWTH FACTOR RECEPTOR C-MET IN COMPLEX WITH ALTIRATINIB ANALOG DP-4157
Descriptor: Hepatocyte growth factor receptor, N-(2,5-difluoro-4-{[2-(1-methyl-1H-pyrazol-4-yl)pyridin-4-yl]oxy}phenyl)-N'-(4-fluorophenyl)cyclopropane-1,1-dicarboxam ide
Authors:Smith, B.D, Kaufman, M.D, Leary, C.B, Turner, B.A, Wise, S.A, Ahn, Y.M, Booth, R.J, Caldwell, T.M, Ensinger, C.L, Hood, M.M, Lu, W.-P, Patt, T.W, Patt, W.C, Rutkoski, T.J, Samarakoon, T, Telikepalli, H, Vogeti, L, Vogeti, S, Yates, K.M, Chun, L, Stewart, L.J, Clare, M, Flynn, D.L.
Deposit date:2015-08-27
Release date:2016-08-31
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Altiratinib Inhibits Tumor Growth, Invasion, Angiogenesis, and Microenvironment-Mediated Drug Resistance via Balanced Inhibition of MET, TIE2, and VEGFR2.
Mol.Cancer Ther., 14, 2015
5DFL
DownloadVisualize
BU of 5dfl by Molmil
Crystal structure of Ube2K~Ubiquitin conjugate
Descriptor: GLYCEROL, Ubiquitin, Ubiquitin-conjugating enzyme E2 K
Authors:Middleton, A.J, Day, C.L.
Deposit date:2015-08-27
Release date:2015-12-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The molecular basis of lysine 48 ubiquitin chain synthesis by Ube2K.
Sci Rep, 5, 2015
5DA5
DownloadVisualize
BU of 5da5 by Molmil
Crystal structure of Rhodospirillum rubrum Rru_A0973
Descriptor: CALCIUM ION, FE (III) ION, GLYCOLIC ACID, ...
Authors:He, D, Vanden Hehier, S, Georgiev, A, Altenbach, K, Tarrant, E, Mackay, C.L, Waldron, K.J, Clarke, D.J, Marles-Wright, J.
Deposit date:2015-08-19
Release date:2016-08-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.064 Å)
Cite:Structural characterization of encapsulated ferritin provides insight into iron storage in bacterial nanocompartments.
Elife, 5, 2016

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon