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7V1W
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BU of 7v1w by Molmil
Difructose dianhydride I synthase/hydrolase (alphaFFase1) from Bifidobacterium dentium in complex with beta-D-arabinofuranose
Descriptor: CALCIUM ION, Difructose dianhydride I synthase/hydrolase (alphaFFase1), beta-D-arabinofuranose
Authors:Kashima, T, Arakawa, T, Yamada, C, Fujita, K, Fushinobu, S.
Deposit date:2021-08-06
Release date:2021-11-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Identification of difructose dianhydride I synthase/hydrolase from an oral bacterium establishes a novel glycoside hydrolase family.
J.Biol.Chem., 297, 2021
7V1X
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BU of 7v1x by Molmil
Difructose dianhydride I synthase/hydrolase (alphaFFase1) from Bifidobacterium dentium in complex with beta-D-fructofuranose
Descriptor: CALCIUM ION, Difructose dianhydride I synthase/hydrolase, beta-D-fructofuranose
Authors:Kashima, T, Arakawa, T, Yamada, C, Fujita, K, Fushinobu, S.
Deposit date:2021-08-06
Release date:2021-11-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Identification of difructose dianhydride I synthase/hydrolase from an oral bacterium establishes a novel glycoside hydrolase family.
J.Biol.Chem., 297, 2021
7V1V
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BU of 7v1v by Molmil
Difructose dianhydride I synthase/hydrolase (alphaFFase1) from Bifidobacterium dentium, ligand-free form
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, D(-)-TARTARIC ACID, ...
Authors:Kashima, T, Arakawa, T, Yamada, C, Fujita, K, Fushinobu, S.
Deposit date:2021-08-06
Release date:2021-11-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Identification of difructose dianhydride I synthase/hydrolase from an oral bacterium establishes a novel glycoside hydrolase family.
J.Biol.Chem., 297, 2021
7F8J
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BU of 7f8j by Molmil
Cryo-EM structure of human pannexin-1 in a nanodisc
Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, Pannexin-1
Authors:Kuzuya, M, Hirano, H, Hayashida, K, Watanabe, M, Kobayashi, K, Tani, K, Fujiyoshi, Y, Oshima, A.
Deposit date:2021-07-02
Release date:2022-01-26
Last modified:2022-02-23
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structures of human pannexin-1 in nanodiscs reveal gating mediated by dynamic movement of the N terminus and phospholipids.
Sci.Signal., 15, 2022
7F8O
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BU of 7f8o by Molmil
Cryo-EM structure of the C-terminal deletion mutant of human PANX1 in a nanodisc
Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, Pannexin-1
Authors:Kuzuya, M, Hirano, H, Hayashida, K, Watanabe, M, Kobayashi, K, Tani, K, Fujiyoshi, Y, Oshima, A.
Deposit date:2021-07-02
Release date:2022-01-26
Last modified:2022-02-23
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structures of human pannexin-1 in nanodiscs reveal gating mediated by dynamic movement of the N terminus and phospholipids.
Sci.Signal., 15, 2022
7F8N
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BU of 7f8n by Molmil
Human pannexin-1 showing a conformational change in the N-terminal domain and blocked pore
Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, Pannexin-1
Authors:Kuzuya, M, Hirano, H, Hayashida, K, Watanabe, M, Kobayashi, K, Tani, K, Fujiyoshi, Y, Oshima, A.
Deposit date:2021-07-02
Release date:2022-01-26
Last modified:2022-02-23
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structures of human pannexin-1 in nanodiscs reveal gating mediated by dynamic movement of the N terminus and phospholipids.
Sci.Signal., 15, 2022
2CY1
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BU of 2cy1 by Molmil
Crystal structure of APE1850
Descriptor: NusA protein homolog
Authors:Shibata, R, Bessho, Y, Umehara, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-04
Release date:2006-01-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystallization of the archaeal transcription termination factor NusA: a significant decrease in twinning under microgravity conditions
Acta Crystallogr.,Sect.F, 63, 2007
2CXF
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BU of 2cxf by Molmil
RUN domain of Rap2 interacting protein x, crystallized in C2 space group
Descriptor: rap2 interacting protein x
Authors:Kukimoto-Niino, M, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-29
Release date:2005-12-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:Crystal Structure of the RUN Domain of the RAP2-interacting Protein x
J.Biol.Chem., 281, 2006
2YZA
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BU of 2yza by Molmil
Crystal structure of kinase domain of Human 5'-AMP-activated protein kinase alpha-2 subunit mutant (T172D)
Descriptor: 5'-AMP-activated protein kinase catalytic subunit alpha-2
Authors:Saijo, S, Takagi, T, Yoshikawa, S, Kishishita, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-04
Release date:2008-05-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:Structural basis for compound C inhibition of the human AMP-activated protein kinase alpha 2 subunit kinase domain
Acta Crystallogr.,Sect.D, 67, 2011
7VHC
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BU of 7vhc by Molmil
Crystal structure of the STX2a complexed with AR4A peptide
Descriptor: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, Shiga toxin 2 B subunit, inhibitor peptide, ...
Authors:Senda, M, Takahashi, M, Nishikawa, K, Senda, T.
Deposit date:2021-09-22
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A unique peptide-based pharmacophore identifies an inhibitory compound against the A-subunit of Shiga toxin.
Sci Rep, 12, 2022
2ZV2
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BU of 2zv2 by Molmil
Crystal structure of human calcium/calmodulin-dependent protein kinase kinase 2, beta, CaMKK2 kinase domain in complex with STO-609
Descriptor: 7-oxo-7H-benzimidazo[2,1-a]benz[de]isoquinoline-3-carboxylic acid, Calcium/calmodulin-dependent protein kinase kinase 2
Authors:Yoshikawa, S, Kukimoto-niino, M, Shirouzu, M, Suzuki, A, Lee, S, Minokoshi, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-10-31
Release date:2009-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the Ca2+/calmodulin-dependent protein kinase kinase in complex with the inhibitor STO-609
J.Biol.Chem., 286, 2011
7VHE
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BU of 7vhe by Molmil
Crystal structure of the STX2a complexed with RRRA peptide
Descriptor: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, GLYCEROL, RRRA peptide, ...
Authors:Senda, M, Takahashi, M, Nishikawa, K, Senda, T.
Deposit date:2021-09-22
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A unique peptide-based pharmacophore identifies an inhibitory compound against the A-subunit of Shiga toxin.
Sci Rep, 12, 2022
7VHF
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BU of 7vhf by Molmil
Crystal structure of the STX2a complexed with RRA peptide
Descriptor: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, GLYCEROL, RRA peptide, ...
Authors:Senda, M, Takahashi, M, Nishikawa, K, Senda, T.
Deposit date:2021-09-22
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A unique peptide-based pharmacophore identifies an inhibitory compound against the A-subunit of Shiga toxin.
Sci Rep, 12, 2022
7VHD
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BU of 7vhd by Molmil
Crystal structure of the STX2a complexed with R4A peptide
Descriptor: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, ARG-ARG-ARG-ARG-ALA, Shiga toxin 2 B subunit, ...
Authors:Senda, M, Takahashi, M, Nishikawa, K, Senda, T.
Deposit date:2021-09-22
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A unique peptide-based pharmacophore identifies an inhibitory compound against the A-subunit of Shiga toxin.
Sci Rep, 12, 2022
1IUJ
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BU of 1iuj by Molmil
The structure of TT1380 protein from thermus thermophilus
Descriptor: ZINC ION, hypothetical protein TT1380
Authors:Wada, T, Shirouzu, M, Park, S.-Y, Tame, J.R.H, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-05
Release date:2003-09-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the conserved hypothetical protein TT1380 from Thermus thermophilus HB8
Proteins, 55, 2004
2CYE
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BU of 2cye by Molmil
Crystal structure of Thioesterase complexed with coenzyme A and Zn from Thermus thermophilus HB8
Descriptor: COENZYME A, Putative thioesterase, ZINC ION
Authors:Hosaka, T, Kato-Murayama, M, Murayama, K, Kishishita, S, Handa, N, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-06
Release date:2006-01-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the putative thioesterase protein TTHA1846 from Thermus thermophilus HB8 complexed with coenzyme A and a zinc ion.
Acta Crystallogr.,Sect.D, 65, 2009
2OM7
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BU of 2om7 by Molmil
Structural Basis for Interaction of the Ribosome with the Switch Regions of GTP-bound Elongation Factors
Descriptor: 16S ribosomal RNA (H5), 30S ribosomal protein S12, 30S ribosomal protein S2, ...
Authors:Connell, S.R, Wilson, D.N, Rost, M, Schueler, M, Giesebrecht, J, Dabrowski, M, Mielke, T, Fucini, P, Spahn, C.M.T.
Deposit date:2007-01-21
Release date:2008-01-15
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (7.3 Å)
Cite:Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors.
Mol.Cell, 25, 2007
7VOT
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BU of 7vot by Molmil
The structure of dimeric photosynthetic RC-LH1 supercomplex in Class-2
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN B, ...
Authors:Cao, P, Li, M, Liu, L.N.
Deposit date:2021-10-14
Release date:2022-04-27
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis for the assembly and quinone transport mechanisms of the dimeric photosynthetic RC-LH1 supercomplex.
Nat Commun, 13, 2022
7VOR
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BU of 7vor by Molmil
The structure of dimeric photosynthetic RC-LH1 supercomplex in Class-1
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, ...
Authors:Cao, P, Li, M, Liu, L.N.
Deposit date:2021-10-14
Release date:2022-04-27
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.74 Å)
Cite:Structural basis for the assembly and quinone transport mechanisms of the dimeric photosynthetic RC-LH1 supercomplex.
Nat Commun, 13, 2022
7VB9
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BU of 7vb9 by Molmil
Rba sphaeroides PufY-KO RC-LH1 dimer type-2
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, ...
Authors:Bracun, L, Yamagata, A, Liu, L.N, Shirouzu, M.
Deposit date:2021-08-30
Release date:2022-05-04
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Structural basis for the assembly and quinone transport mechanisms of the dimeric photosynthetic RC-LH1 supercomplex.
Nat Commun, 13, 2022
7VA9
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BU of 7va9 by Molmil
Rba sphaeroides PufY-KO RC-LH1 dimer type-1
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN B, ...
Authors:Bracun, L, Yamagata, A, Liu, L.N, Shirouzu, M.
Deposit date:2021-08-27
Release date:2022-05-04
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Structural basis for the assembly and quinone transport mechanisms of the dimeric photosynthetic RC-LH1 supercomplex.
Nat Commun, 13, 2022
7VOY
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BU of 7voy by Molmil
Rba sphaeroides PufX-KO RC-LH1
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, FE (II) ION, ...
Authors:Bracun, L, Yamagata, A, Liu, L.N, Shirouzu, M.
Deposit date:2021-10-15
Release date:2022-05-04
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structural basis for the assembly and quinone transport mechanisms of the dimeric photosynthetic RC-LH1 supercomplex.
Nat Commun, 13, 2022
7VNM
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BU of 7vnm by Molmil
Rba sphaeroides PufY-KO RC-LH1 monomer
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, ...
Authors:Bracun, L, Yamagata, A, Liu, L.N, Shirouzu, M.
Deposit date:2021-10-11
Release date:2022-05-04
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Structural basis for the assembly and quinone transport mechanisms of the dimeric photosynthetic RC-LH1 supercomplex.
Nat Commun, 13, 2022
7VNY
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BU of 7vny by Molmil
Rba sphaeroides WT RC-LH1 monomer
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN B, ...
Authors:Bracun, L, Yamagata, A, Liu, L.N, Shirouzu, M.
Deposit date:2021-10-12
Release date:2022-06-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:Structural basis for the assembly and quinone transport mechanisms of the dimeric photosynthetic RC-LH1 supercomplex.
Nat Commun, 13, 2022
3VJO
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BU of 3vjo by Molmil
Crystal structure of the wild-type EGFR kinase domain in complex with AMPPNP.
Descriptor: Epidermal growth factor receptor, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Yoshikawa, S, Kukimoto-Niino, M, Shirouzu, M, Semba, K, Yamamoto, T, Yokoyama, S.
Deposit date:2011-10-27
Release date:2012-03-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Structural basis for the altered drug sensitivities of non-small cell lung cancer-associated mutants of human epidermal growth factor receptor.
Oncogene, 32, 2013

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