Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8PGQ
DownloadVisualize
BU of 8pgq by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 3225
Descriptor: 7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-[3-cyano-4-(methylsulfonylamino)phenyl]-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-18
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 3225
To Be Published
8PTV
DownloadVisualize
BU of 8ptv by Molmil
IPNS variant N252Q in complex with Fe and ACV under anaerobic conditions
Descriptor: FE (III) ION, Isopenicillin N synthase, L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE, ...
Authors:Rabe, P, Schofield, C.J.
Deposit date:2023-07-15
Release date:2024-07-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:IPNS variant N252Q in complex with Fe and ACV under anaerobic conditions
To Be Published
8PH1
DownloadVisualize
BU of 8ph1 by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 3708
Descriptor: 7-[(1~{S})-1-[(5~{R})-5-[(2~{R})-3-azanyl-2-methyl-propyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-(1~{H}-pyrazol-4-yl)-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-18
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 3708
To Be Published
8PGI
DownloadVisualize
BU of 8pgi by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 2984
Descriptor: 7-[(1~{S})-1-[5-[(3-azanyl-3-methyl-azetidin-1-yl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-18
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 2984
To Be Published
8PGJ
DownloadVisualize
BU of 8pgj by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 2985
Descriptor: 7-[(1~{S})-1-[5-[(3-azanylazetidin-1-yl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, DIMETHYL SULFOXIDE, ...
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-18
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 2985
To Be Published
8PG5
DownloadVisualize
BU of 8pg5 by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 2731
Descriptor: 3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-7-[(1~{S})-1-(piperidin-4-ylmethoxy)ethyl]-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-18
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 2731
To Be Published
8PH0
DownloadVisualize
BU of 8ph0 by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 3637
Descriptor: 7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-(2-oxidanylidene-1,3-dihydroindol-5-yl)-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-18
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 3637
To Be Published
8PG7
DownloadVisualize
BU of 8pg7 by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 2755
Descriptor: 7-[(1~{S})-1-[3-(4-azanylbutyl)-2,5-bis(oxidanylidene)imidazolidin-1-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-18
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 2755
To Be Published
8PGW
DownloadVisualize
BU of 8pgw by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 3460
Descriptor: 7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-(5-methoxy-6-oxidanyl-pyridin-3-yl)-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-18
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 3460
To Be Published
8PY5
DownloadVisualize
BU of 8py5 by Molmil
Isopenicillin N synthase in complex with Fe and ACdV under anaerobic conditions
Descriptor: FE (III) ION, Isopenicillin N synthase, L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE, ...
Authors:Rabe, P, Schofield, C.J.
Deposit date:2023-07-25
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Isopenicillin N synthase in complex with Fe and ACdV under anaerobic conditions
To Be Published
8PY9
DownloadVisualize
BU of 8py9 by Molmil
Isopenicillin N synthase in complex with Fe, O2, ACdV or thioaldehyde after 3s O2 exposure
Descriptor: (2S)-2-azanyl-6-[[(2R)-1-[[(2R)-3-methyl-1-oxidanyl-1-oxidanylidene-butan-2-yl]amino]-1-oxidanylidene-3-sulfanylidene-propan-2-yl]amino]-6-oxidanylidene-hexanoic acid, FE (III) ION, Isopenicillin N synthase, ...
Authors:Rabe, P, Schofield, C.J.
Deposit date:2023-07-25
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Isopenicillin N synthase in complex with Fe, O2, ACdV or thioaldehyde after 3s O2 exposure
To Be Published
8PY7
DownloadVisualize
BU of 8py7 by Molmil
Isopenicillin N synthase in complex with Fe, ACdV and O2 after 1s O2 exposure
Descriptor: FE (III) ION, Isopenicillin N synthase, L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE, ...
Authors:Rabe, P, Schofield, C.J.
Deposit date:2023-07-25
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Isopenicillin N synthase in complex with Fe, ACdV and O2 after 1s O2 exposure
To Be Published
8PXZ
DownloadVisualize
BU of 8pxz by Molmil
Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with natural substrate
Descriptor: (2~{R})-2-[[(2~{S},6~{R})-6,7-bis(azanyl)-2-[[(4~{R})-4,5-bis(azanyl)-5-oxidanylidene-pentanoyl]amino]-7-oxidanylidene-heptanoyl]amino]propanoic acid, (2~{R})-2-azanyl-~{N}'-[(2~{S},6~{R})-6,7-bis(azanyl)-1-oxidanyl-7-oxidanylidene-heptan-2-yl]pentanediamide, 1,2-ETHANEDIOL, ...
Authors:de Munnik, M, Schofield, C.J.
Deposit date:2023-07-24
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with natural substrate
To Be Published
8PY6
DownloadVisualize
BU of 8py6 by Molmil
Isopenicillin N synthase in complex with Fe and ACdV under anaerobic conditions
Descriptor: FE (III) ION, Isopenicillin N synthase, L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE, ...
Authors:Rabe, P, Schofield, C.J.
Deposit date:2023-07-25
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Isopenicillin N synthase in complex with Fe and ACdV under anaerobic conditions
To Be Published
8PXY
DownloadVisualize
BU of 8pxy by Molmil
Crystal structure of the transpeptidase LdtMt2 C354S mutant from Mycobacterium tuberculosis in complex with natural substrate
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-alpha-muramic acid, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:de Munnik, M, Schofield, C.J.
Deposit date:2023-07-24
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of the transpeptidase LdtMt2 C354S mutant from Mycobacterium tuberculosis in complex with natural substrate
To Be Published
8Q5S
DownloadVisualize
BU of 8q5s by Molmil
Anaerobic crystal structure of apo-HIF prolyl hydroxylase 2 (PHD2 181-407)in complex with acetate (ACT) and HIF2alpha-CODD peptide
Descriptor: ACETATE ION, Egl nine homolog 1, Endothelial PAS domain-containing protein 1
Authors:Fiorini, G, Figg Jr, W.D, Schofield, C.J.
Deposit date:2023-08-09
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:HIF prolyl hydroxylase 2 in complex with HIF2alpha-CODD
To Be Published
8PY8
DownloadVisualize
BU of 8py8 by Molmil
Isopenicillin N synthase in complex with Fe, ACdV and O2 after 2s O2 exposure
Descriptor: (2S)-2-azanyl-6-[[(2R)-1-[[(2R)-3-methyl-1-oxidanyl-1-oxidanylidene-butan-2-yl]amino]-1-oxidanylidene-3-sulfanylidene-propan-2-yl]amino]-6-oxidanylidene-hexanoic acid, FE (III) ION, Isopenicillin N synthase, ...
Authors:Rabe, P, Schofield, C.J.
Deposit date:2023-07-25
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Isopenicillin N synthase in complex with Fe, ACdV and O2 after 2s O2 exposure
To Be Published
8PYA
DownloadVisualize
BU of 8pya by Molmil
Isopenicillin N synthase in complex with Fe, O2, ACdV or thioaldehyde after 4s O2 exposure
Descriptor: (2S)-2-azanyl-6-[[(2R)-1-[[(2R)-3-methyl-1-oxidanyl-1-oxidanylidene-butan-2-yl]amino]-1-oxidanylidene-3-sulfanylidene-propan-2-yl]amino]-6-oxidanylidene-hexanoic acid, FE (III) ION, Isopenicillin N synthase, ...
Authors:Rabe, P, Schofield, C.J.
Deposit date:2023-07-25
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Isopenicillin N synthase in complex with Fe, O2, ACdV or thioaldehyde after 4s O2 exposure
To Be Published
8Q64
DownloadVisualize
BU of 8q64 by Molmil
Crystal structure of hydroxylated HIF2alpha-CODD peptide (523-542) bound to apo-HIF prolyl hydroxylase 2 (PHD2 181-407)
Descriptor: ACETATE ION, Egl nine homolog 1, Endothelial PAS domain-containing protein 1
Authors:Fiorini, G, Figg Jr, W.D, Schofield, C.J.
Deposit date:2023-08-10
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:HIF prolyl hydroxylase 2 in complex with HIF2alpha-CODD
To Be Published
8Q6E
DownloadVisualize
BU of 8q6e by Molmil
Aerobic crystal structure of HIF prolyl hydroxylase 2 (PHD2 181-407) in complex with Fe(III), 2-oxoglutarate (2OG) and HIF2alpha-CODD peptide
Descriptor: 2-OXOGLUTARIC ACID, CHLORIDE ION, Egl nine homolog 1, ...
Authors:Fiorini, G, Figg Jr, W.D, Schofield, C.J.
Deposit date:2023-08-11
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:HIF prolyl hydroxylase 2 in complex with HIF2alpha-CODD
To Be Published
8Q6D
DownloadVisualize
BU of 8q6d by Molmil
Anaerobic crystal structure of HIF prolyl hydroxylase 2 (PHD2 181-407) in complex with HIF2alpha-CODD peptide (523-542), Fe(II) and 2-oxoglutarate (2OG)
Descriptor: 2-OXOGLUTARIC ACID, Egl nine homolog 1, Endothelial PAS domain-containing protein 1, ...
Authors:Fiorini, G, Figg Jr, W.D, Schofield, C.J.
Deposit date:2023-08-11
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:HIF prolyl hydroxylase 2 in complex with HIF2alpha-CODD
To Be Published
8PAC
DownloadVisualize
BU of 8pac by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 2553
Descriptor: 7-[(1~{S})-1-[4-(aminomethyl)phenyl]carbonyloxyethyl]-3-[6-(morpholin-4-ylmethyl)pyridin-3-yl]-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-07
Release date:2024-06-26
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 2553
To Be Published
8PAD
DownloadVisualize
BU of 8pad by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 2555
Descriptor: 7-[(1~{S})-1-[[4-(aminomethyl)phenyl]carbonylamino]ethyl]-3-[6-(morpholin-4-ylmethyl)pyridin-3-yl]-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-07
Release date:2024-06-26
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 2555
To Be Published
8PAO
DownloadVisualize
BU of 8pao by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 2654
Descriptor: 7-[(1~{S})-1-[4-[(2-azanylethylsulfonylamino)methyl]-1,2,3-triazol-1-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-08
Release date:2024-06-26
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 2654
To Be Published
8PB2
DownloadVisualize
BU of 8pb2 by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 2697
Descriptor: 7-[(1~{S})-1-[4-(carbamimidamidomethyl)-1,2,3-triazol-1-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-08
Release date:2024-06-26
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 2697
To Be Published

225399

PDB entries from 2024-09-25

PDB statisticsPDBj update infoContact PDBjnumon