Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5KVN
DownloadVisualize
BU of 5kvn by Molmil
NMR Solution Structure of Designed Peptide NC_HEE_D1
Descriptor: Designed peptide NC_HEE_D1
Authors:Harvey, P.J, Craik, D.J.
Deposit date:2016-07-14
Release date:2016-09-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Accurate de novo design of hyperstable constrained peptides.
Nature, 538, 2016
8ELO
DownloadVisualize
BU of 8elo by Molmil
Crystal structure of SARS-CoV-2 spike protein receptor-binding domain in complex with antibody CC12.1 Fab and nanobody Nb-C4-225
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CC12.1 Fab heavy chain, CC12.1 Fab light chain, ...
Authors:Liu, H, Wilson, I.A.
Deposit date:2022-09-26
Release date:2023-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Fully synthetic platform to rapidly generate tetravalent bispecific nanobody-based immunoglobulins.
Proc.Natl.Acad.Sci.USA, 120, 2023
8ELQ
DownloadVisualize
BU of 8elq by Molmil
Crystal structure of SARS-CoV-2 spike protein receptor-binding domain in complex with antibody CC12.1 Fab and nanobody Nb-C4-255
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CC12.1 Fab heavy chain, CC12.1 Fab light chain, ...
Authors:Liu, H, Wilson, I.A.
Deposit date:2022-09-26
Release date:2023-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Fully synthetic platform to rapidly generate tetravalent bispecific nanobody-based immunoglobulins.
Proc.Natl.Acad.Sci.USA, 120, 2023
8ELP
DownloadVisualize
BU of 8elp by Molmil
Crystal structure of SARS-CoV-2 spike protein receptor-binding domain in complex with antibody CC12.1 Fab and nanobody Nb-C4-240
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CC12.1 Fab heavy chain, CC12.1 Fab light chain, ...
Authors:Liu, H, Wilson, I.A.
Deposit date:2022-09-26
Release date:2023-07-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Fully synthetic platform to rapidly generate tetravalent bispecific nanobody-based immunoglobulins.
Proc.Natl.Acad.Sci.USA, 120, 2023
6O0I
DownloadVisualize
BU of 6o0i by Molmil
NMR ensemble of computationally designed protein XAA
Descriptor: Design construct XAA
Authors:Wei, K.Y, Moschidi, D, Nerli, S, Sgourakis, N, Baker, D.
Deposit date:2019-02-16
Release date:2020-04-22
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
Proc.Natl.Acad.Sci.USA, 117, 2020
6NY8
DownloadVisualize
BU of 6ny8 by Molmil
Crystal structure of computationally designed protein XAA_GVDQ with calcium
Descriptor: CALCIUM ION, CHLORIDE ION, Design construct XAA_GVDQ
Authors:Wei, K.Y, Bick, M.J.
Deposit date:2019-02-11
Release date:2020-04-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
Proc.Natl.Acad.Sci.USA, 117, 2020
6NYE
DownloadVisualize
BU of 6nye by Molmil
Crystal structure of computationally designed protein XAX
Descriptor: Design construct XAX
Authors:Wei, K.Y, Bick, M.J.
Deposit date:2019-02-11
Release date:2020-04-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
Proc.Natl.Acad.Sci.USA, 117, 2020
6NZ1
DownloadVisualize
BU of 6nz1 by Molmil
Crystal structure of computationally designed protein XXA_GVDQ
Descriptor: Design construct XXA_GVDQ
Authors:Wei, K.Y, Bick, M.J.
Deposit date:2019-02-12
Release date:2020-04-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
Proc.Natl.Acad.Sci.USA, 117, 2020
6NXM
DownloadVisualize
BU of 6nxm by Molmil
Crystal structure of computationally designed protein XAA_GVDQ
Descriptor: Design construct XAA_GVDQ
Authors:Wei, K.Y, Bick, M.J.
Deposit date:2019-02-08
Release date:2020-04-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
Proc.Natl.Acad.Sci.USA, 117, 2020
6NZ3
DownloadVisualize
BU of 6nz3 by Molmil
Crystal structure of computationally designed protein XAA_GGHN
Descriptor: CHLORIDE ION, Design construct XAA_GGHN
Authors:Wei, K.Y, Bick, M.J.
Deposit date:2019-02-12
Release date:2020-04-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
Proc.Natl.Acad.Sci.USA, 117, 2020
6NX2
DownloadVisualize
BU of 6nx2 by Molmil
Crystal structure of computationally designed protein AAA
Descriptor: BROMIDE ION, Design construct AAA
Authors:Wei, K.Y, Bick, M.J.
Deposit date:2019-02-07
Release date:2020-04-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
Proc.Natl.Acad.Sci.USA, 117, 2020
6NYI
DownloadVisualize
BU of 6nyi by Molmil
Crystal structure of computationally designed protein XXA
Descriptor: Design construct XXA
Authors:Wei, K.Y, Bick, M.J.
Deposit date:2019-02-11
Release date:2020-04-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
Proc.Natl.Acad.Sci.USA, 117, 2020
6NYK
DownloadVisualize
BU of 6nyk by Molmil
Crystal structure of computationally designed protein XAX_GGDQ
Descriptor: Design construct XAX_GGDQ
Authors:Wei, K.Y, Bick, M.J.
Deposit date:2019-02-11
Release date:2020-04-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
Proc.Natl.Acad.Sci.USA, 117, 2020
6O0C
DownloadVisualize
BU of 6o0c by Molmil
NMR ensemble of computationally designed protein XAA_GVDQ mutant M4L
Descriptor: Design construct XAA_GVDQ mutant M4L
Authors:Wei, K.Y, Moschidi, D, Nerli, S, Sgourakis, N, Baker, D.
Deposit date:2019-02-15
Release date:2020-04-22
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
Proc.Natl.Acad.Sci.USA, 117, 2020
2FB8
DownloadVisualize
BU of 2fb8 by Molmil
Structure of the B-Raf kinase domain bound to SB-590885
Descriptor: (1Z)-5-(2-{4-[2-(DIMETHYLAMINO)ETHOXY]PHENYL}-5-PYRIDIN-4-YL-1H-IMIDAZOL-4-YL)INDAN-1-ONE OXIME, B-Raf proto-oncogene serine/threonine-protein kinase
Authors:Lougheed, J.C, Lee, J, Chau, D.C, Stout, T.J.
Deposit date:2005-12-08
Release date:2006-12-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Demonstration of a genetic therapeutic index for tumors expressing oncogenic BRAF by the kinase inhibitor SB-590885.
Cancer Res., 66, 2006
8DT8
DownloadVisualize
BU of 8dt8 by Molmil
LM18/Nb136 bispecific tetra-nanobody immunoglobulin in complex with SARS-CoV-2-6P-Mut7 S protein (focused refinement)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, LM18 nanobody, Nb136 nanobody, ...
Authors:Ozorowski, G, Turner, H.L, Ward, A.B.
Deposit date:2022-07-25
Release date:2023-06-14
Method:ELECTRON MICROSCOPY (3.34 Å)
Cite:Fully synthetic platform to rapidly generate tetravalent bispecific nanobody-based immunoglobulins.
Proc.Natl.Acad.Sci.USA, 120, 2023
4R6J
DownloadVisualize
BU of 4r6j by Molmil
Crystal structure of computaional designed Lucine rich repeats DLRR_H in space group P212121
Descriptor: Lucine rich repeats DLRR_H, SULFATE ION
Authors:Shen, B.W, Stoddard, B.L.
Deposit date:2014-08-25
Release date:2015-01-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Control of repeat-protein curvature by computational protein design.
Nat.Struct.Mol.Biol., 22, 2015
4R6G
DownloadVisualize
BU of 4r6g by Molmil
Crystal structure of computational designed leucine rich repeats DLRR_K in space group P22121
Descriptor: CALCIUM ION, leucine rich repeats DLRR_K
Authors:Shen, B.W, Stoddard, B.L.
Deposit date:2014-08-25
Release date:2015-01-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Control of repeat-protein curvature by computational protein design.
Nat.Struct.Mol.Biol., 22, 2015
4R5D
DownloadVisualize
BU of 4r5d by Molmil
Crystal structure of computational designed leucine rich repeats DLRR_G3 in space group F222
Descriptor: 1,2-ETHANEDIOL, Leucine rich repeat protein, SULFATE ION
Authors:Shen, B.W, Stoddard, B.L.
Deposit date:2014-08-21
Release date:2015-01-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Control of repeat-protein curvature by computational protein design.
Nat.Struct.Mol.Biol., 22, 2015
4R58
DownloadVisualize
BU of 4r58 by Molmil
Crystal structure of computational designed leucine rich repeats DLRR_A in space group P21
Descriptor: Leucine Rich Repeat protein
Authors:Shen, B.W, Stoddard, B.L.
Deposit date:2014-08-20
Release date:2015-01-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Control of repeat-protein curvature by computational protein design.
Nat.Struct.Mol.Biol., 22, 2015
4R5C
DownloadVisualize
BU of 4r5c by Molmil
Crystal structure of computational designed leucine rich repeats DLRR_E in space group of P212121
Descriptor: 1,2-ETHANEDIOL, Leucine rich repeat protein
Authors:Shen, B.W, Stoddard, B.L.
Deposit date:2014-08-21
Release date:2015-01-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Control of repeat-protein curvature by computational protein design.
Nat.Struct.Mol.Biol., 22, 2015
4R6F
DownloadVisualize
BU of 4r6f by Molmil
Crystal structure of computational designed protein DLRR_I
Descriptor: Leucine rich repeat DLRR_I
Authors:Shen, B.W, Stoddard, B.L.
Deposit date:2014-08-25
Release date:2015-01-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Control of repeat-protein curvature by computational protein design.
Nat.Struct.Mol.Biol., 22, 2015
4NDK
DownloadVisualize
BU of 4ndk by Molmil
Crystal structure of a computational designed engrailed homeodomain variant fused with YFP
Descriptor: E23P-YFP, GFP-like fluorescent chromoprotein FP506, related, ...
Authors:Mou, Y, Mayo, S.L.
Deposit date:2013-10-26
Release date:2014-11-05
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Using Molecular Dynamics Simulations as an Aid in the Prediction of Domain Swapping of Computationally Designed Protein Variants.
J.Mol.Biol., 427, 2015
4NDJ
DownloadVisualize
BU of 4ndj by Molmil
Crystal Structure of a computational designed engrailed homeodomain variant fused with YFP
Descriptor: Green fluorescent protein, chimeric construct,GFP-like fluorescent chromoprotein FP506, related
Authors:Mou, Y, Mayo, S.L.
Deposit date:2013-10-26
Release date:2014-11-05
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Using Molecular Dynamics Simulations as an Aid in the Prediction of Domain Swapping of Computationally Designed Protein Variants.
J.Mol.Biol., 427, 2015
3RPT
DownloadVisualize
BU of 3rpt by Molmil
Crystal structure of the anti-HIV b12 scaffold protein
Descriptor: Endoglucanase E-2, SULFATE ION
Authors:Chen, L, Kwong, P.D.
Deposit date:2011-04-27
Release date:2011-12-21
Last modified:2017-07-26
Method:X-RAY DIFFRACTION (1.303 Å)
Cite:Computation-guided backbone grafting of a discontinuous motif onto a protein scaffold.
Science, 334, 2011

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon