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2D29
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BU of 2d29 by Molmil
Structural study on project ID TT0172 from Thermus thermophilus HB8
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, acyl-CoA dehydrogenase
Authors:Shimizu, K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-09-05
Release date:2006-03-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural study on project ID TT0172 from Thermus thermophilus HB8
To be Published
2D3K
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BU of 2d3k by Molmil
Structural study on Project ID PH1539 from Pyrococcus horikoshii OT3
Descriptor: Peptidyl-tRNA hydrolase, ZINC ION
Authors:Shimizu, K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-09-29
Release date:2006-03-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of peptidyl-tRNA hydrolase 2 from Pyrococcus horikoshii OT3: insight into the functional role of its dimeric state.
Acta Crystallogr.,Sect.D, 64, 2008
2DSJ
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BU of 2dsj by Molmil
Crystal structure of project ID TT0128 from Thermus thermophilus HB8
Descriptor: CHLORIDE ION, Pyrimidine-nucleoside (Thymidine) phosphorylase
Authors:Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-06-30
Release date:2006-12-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of project ID TT0128 from Thermus thermophilus HB8
To be Published
2DVL
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BU of 2dvl by Molmil
Crystal structure of project TT0160 from Thermus thermophilus HB8
Descriptor: Acyl-CoA dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-31
Release date:2007-01-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of TT0160 from Thermus thermophilus HB8
To be Published
2DY0
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BU of 2dy0 by Molmil
Crystal structure of project JW0458 from Escherichia coli
Descriptor: Adenine phosphoribosyltransferase, MAGNESIUM ION
Authors:Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-04
Release date:2007-03-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structure of JW0458 from Escherichia coli
To be Published
2ELC
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BU of 2elc by Molmil
Crystal structure of TTHA1842 from Thermus thermophilus HB8
Descriptor: Anthranilate phosphoribosyltransferase, GLYCEROL, SODIUM ION
Authors:Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-27
Release date:2007-10-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of TTHA1842 from Thermus thermophilus HB8
To be Published
2EEQ
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BU of 2eeq by Molmil
Mutant Y29M structure of PH0725 from Pyrococcus horikoshii OT3
Descriptor: GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, ...
Authors:Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-16
Release date:2007-08-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mutant Y29M structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2EMU
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BU of 2emu by Molmil
Mutant L21H structure of PH0725 from Pyrococcus horikoshii OT3
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, SODIUM ION, diphthine synthase
Authors:Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-28
Release date:2007-10-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Mutant L21H structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2ENU
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BU of 2enu by Molmil
Mutant L121M structure of TTHB049 from Thermus thermophilus HB8
Descriptor: Alpha-ribazole-5'-phosphate phosphatase, GLYCEROL
Authors:Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-28
Release date:2007-10-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Mutant L121M structure of TTHB049 from Thermus thermophilus HB8
To be Published
2ZV3
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BU of 2zv3 by Molmil
Crystal structure of project MJ0051 from Methanocaldococcus jannaschii DSM 2661
Descriptor: Peptidyl-tRNA hydrolase
Authors:Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-10-31
Release date:2009-05-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of project MJ0051 from Methanocaldococcus jannaschii DSM 2661
To be published
2ZVC
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BU of 2zvc by Molmil
Form 2 structure (C2221) of TT0207 from Thermus thermophilus HB8
Descriptor: Precorrin-3 C17-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-11-04
Release date:2009-05-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Form 2 structure (C2221) of TT0207 from Thermus thermophilus HB8
To be published
2ZVB
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BU of 2zvb by Molmil
Crystal structure of TT0207 from Thermus thermophilus HB8
Descriptor: Precorrin-3 C17-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-11-04
Release date:2009-05-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of TT0207 from Thermus thermophilus HB8
To be published
2RQZ
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BU of 2rqz by Molmil
Structure of sugar modified epidermal growth factor-like repeat 12 of mouse Notch-1 receptor
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-alpha-L-fucopyranose, Neurogenic locus notch homolog protein 1
Authors:Shimizu, K, Fujitani, N, Hosoguchi, K, Nishimura, S.
Deposit date:2010-02-26
Release date:2010-10-13
Last modified:2020-07-29
Method:SOLUTION NMR
Cite:Chemical Synthesis, Folding, and Structural Insights into O-Fucosylated Epidermal Growth Factor-like Repeat 12 of Mouse Notch-1 Receptor
J.Am.Chem.Soc., 132, 2010
1WNG
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BU of 1wng by Molmil
Structural study of project ID PH0725 from Pyrococcus horikoshii OT3
Descriptor: Probable diphthine synthase, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION
Authors:Kunishima, N, Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-08-02
Release date:2005-07-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of two archaeal diphthine synthases: insights into the post-translational modification of elongation factor 2.
Acta Crystallogr.,Sect.D, 64, 2008
2RR2
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BU of 2rr2 by Molmil
Structure of O-fucosylated epidermal growth factor-like repeat 12 of mouse Notch-1 receptor
Descriptor: Neurogenic locus notch homolog protein 1, alpha-L-fucopyranose
Authors:Hosoguchi, K, Shimizu, K, Fujitani, N, Nishimura, S.
Deposit date:2010-02-26
Release date:2010-10-13
Last modified:2020-07-29
Method:SOLUTION NMR
Cite:Chemical Synthesis, Folding, and Structural Insights into O-Fucosylated Epidermal Growth Factor-like Repeat 12 of Mouse Notch-1 Receptor
J.Am.Chem.Soc., 132, 2010
2RR0
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BU of 2rr0 by Molmil
Structure of epidermal growth factor-like repeat 12 of mouse Notch-1 receptor
Descriptor: Neurogenic locus notch homolog protein 1
Authors:Hosoguchi, K, Shimizu, K, Fujitani, N, Nishimura, S.
Deposit date:2010-02-26
Release date:2010-10-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Chemical Synthesis, Folding, and Structural Insights into O-Fucosylated Epidermal Growth Factor-like Repeat 12 of Mouse Notch-1 Receptor
J.Am.Chem.Soc., 132, 2010
1WQL
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BU of 1wql by Molmil
Cumene dioxygenase (cumA1A2) from Pseudomonas fluorescens IP01
Descriptor: FE (II) ION, FE2/S2 (INORGANIC) CLUSTER, OXYGEN MOLECULE, ...
Authors:Dong, X, Fushinobu, S, Fukuda, E, Terada, T, Nakamura, S, Shimizu, K, Nojiri, H, Omori, T, Shoun, H, Wakagi, T.
Deposit date:2004-09-30
Release date:2005-03-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of the Terminal Oxygenase Component of Cumene Dioxygenase from Pseudomonas fluorescens IP01
J.BACTERIOL., 187, 2005
5B2C
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BU of 5b2c by Molmil
Crystal structure of Mumps virus hemagglutinin-neuraminidase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, HN protein, SULFATE ION
Authors:Kubota, M, Takeuchi, K, Watanabe, S, Ohno, S, Matsuoka, R, Kohda, D, Hiramatsu, H, Suzuki, Y, Nakayama, T, Terada, T, Shimizu, K, Shimizu, N, Yanagi, Y, Hashiguchi, T.
Deposit date:2016-01-14
Release date:2016-09-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.238 Å)
Cite:Trisaccharide containing alpha 2,3-linked sialic acid is a receptor for mumps virus
Proc.Natl.Acad.Sci.USA, 113, 2016
5B2D
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BU of 5b2d by Molmil
Crystal structure of Mumps virus hemagglutinin-neuraminidase bound to 3-sialyllactose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, HN protein, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Kubota, M, Takeuchi, K, Watanabe, S, Ohno, S, Matsuoka, R, Kohda, D, Hiramatsu, H, Suzuki, Y, Nakayama, T, Terada, T, Shimizu, K, Shimizu, N, Yanagi, Y, Hashiguchi, T.
Deposit date:2016-01-14
Release date:2016-09-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.177 Å)
Cite:Trisaccharide containing alpha 2,3-linked sialic acid is a receptor for mumps virus
Proc.Natl.Acad.Sci.USA, 113, 2016
6IGX
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BU of 6igx by Molmil
Crystal structure of human CAP-G in complex with CAP-H
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Condensin complex subunit 2, Condensin complex subunit 3
Authors:Hara, K, Migita, T, Shimizu, K, Hashimoto, H.
Deposit date:2018-09-26
Release date:2019-03-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.995 Å)
Cite:Structural basis of HEAT-kleisin interactions in the human condensin I subcomplex.
Embo Rep., 20, 2019
7FBO
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BU of 7fbo by Molmil
geranyl pyrophosphate C6-methyltransferase BezA binding with S-adenosylhomocysteine
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, BezA, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Tsutsumi, H, Moriwaki, Y, Terada, T, Shimizu, K, Katsuyama, Y, Ohnishi, Y.
Deposit date:2021-07-12
Release date:2021-12-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Structural and Molecular Basis of the Catalytic Mechanism of Geranyl Pyrophosphate C6-Methyltransferase: Creation of an Unprecedented Farnesyl Pyrophosphate C6-Methyltransferase.
Angew.Chem.Int.Ed.Engl., 61, 2022
1YT6
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BU of 1yt6 by Molmil
NMR structure of peptide SD
Descriptor: peptide SD
Authors:Murata, T, Hemmi, H, Nakamura, S, Shimizu, K, Suzuki, Y, Yamaguchi, I.
Deposit date:2005-02-10
Release date:2005-09-27
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Structure, epitope mapping, and docking simulation of a gibberellin mimic peptide as a peptidyl mimotope for a hydrophobic ligand.
Febs J., 272, 2005
7FBH
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BU of 7fbh by Molmil
geranyl pyrophosphate C6-methyltransferase BezA
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, BezA, ...
Authors:Tsutsumi, H, Moriwaki, Y, Terada, T, Shimizu, K, Katsuyama, Y, Ohnishi, Y.
Deposit date:2021-07-10
Release date:2021-12-01
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and Molecular Basis of the Catalytic Mechanism of Geranyl Pyrophosphate C6-Methyltransferase: Creation of an Unprecedented Farnesyl Pyrophosphate C6-Methyltransferase.
Angew.Chem.Int.Ed.Engl., 61, 2022
1VCE
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BU of 1vce by Molmil
Crystal structure of project ID PH0725 from Pyrococcus horikoshii OT3
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, diphthine synthase
Authors:Kunishima, N, Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-07
Release date:2005-03-29
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
To be Published
5ZQU
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BU of 5zqu by Molmil
Crystal structure of tetrameric RXRalpha-LBD complexed with partial agonist CBt-PMN
Descriptor: 1-(3,5,5,8,8-pentamethyl-6,7-dihydronaphthalen-2-yl)benzotriazole-5-carboxylic acid, BROMIDE ION, Retinoic acid receptor RXR-alpha
Authors:Miyashita, Y, Numoto, N, Arulmozhiraja, S, Nakano, S, Matsuo, N, Shimizu, K, Kakuta, H, Ito, S, Ikura, T, Ito, N, Tokiwa, H.
Deposit date:2018-04-20
Release date:2019-02-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.60038781 Å)
Cite:Dual conformation of the ligand induces the partial agonistic activity of retinoid X receptor alpha (RXR alpha ).
FEBS Lett., 593, 2019

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