Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8W32
DownloadVisualize
BU of 8w32 by Molmil
Structure and interactions of HIV-1 gp41 CHR-NHR reverse hairpin constructs reveal molecular determinants of antiviral activity
Descriptor: GLYCEROL, SULFATE ION, Transmembrane protein gp41
Authors:McAndrew, R.P, Ralston, C.Y, Gochin, M.
Deposit date:2024-02-21
Release date:2025-03-05
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structure and Interactions of HIV-1 gp41 CHR-NHR Reverse Hairpin Constructs Reveal Molecular Determinants of Antiviral Activity.
J.Mol.Biol., 436, 2024
8W2Y
DownloadVisualize
BU of 8w2y by Molmil
Structure and interactions of HIV-1 gp41 CHR-NHR reverse hairpin constructs reveal molecular determinants of antiviral activity
Descriptor: GLYCEROL, SULFATE ION, Transmembrane protein gp41
Authors:McAndrew, R.P, Ralston, C.Y, Gochin, M.
Deposit date:2024-02-21
Release date:2025-03-05
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structure and Interactions of HIV-1 gp41 CHR-NHR Reverse Hairpin Constructs Reveal Molecular Determinants of Antiviral Activity.
J.Mol.Biol., 436, 2024
6E5G
DownloadVisualize
BU of 6e5g by Molmil
Crystal structure of human TEAD2-Yap binding domain covalently bound to an allosteric regulator
Descriptor: 1-(2-{[3-(trifluoromethyl)phenyl]amino}phenyl)ethan-1-one, Transcriptional enhancer factor TEF-4
Authors:Bum-Erdene, K, Gonzalez-Gutierrez, G, Meroueh, S.O.
Deposit date:2018-07-20
Release date:2019-01-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Small-Molecule Covalent Modification of Conserved Cysteine Leads to Allosteric Inhibition of the TEAD⋅Yap Protein-Protein Interaction.
Cell Chem Biol, 26, 2019
5TIS
DownloadVisualize
BU of 5tis by Molmil
Room temperature XFEL structure of the native, doubly-illuminated photosystem II complex
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Young, I.D, Ibrahim, M, Chatterjee, R, Gul, S, Fuller, F, Koroidov, S, Brewster, A.S, Tran, R, Alonso-Mori, R, Kroll, T, Michels-Clark, T, Laksmono, H, Sierra, R.G, Stan, C.A, Hussein, R, Zhang, M, Douthit, L, Kubin, M, de Lichtenberg, C, Pham, L.V, Nilsson, H, Cheah, M.H, Shevela, D, Saracini, C, Bean, M.A, Seuffert, I, Sokaras, D, Weng, T.-C, Pastor, E, Weninger, C, Fransson, T, Lassalle, L, Braeuer, P, Aller, P, Docker, P.T, Andi, B, Orville, A.M, Glownia, J.M, Nelson, S, Sikorski, M, Zhu, D, Hunter, M.S, Aquila, A, Koglin, J.E, Robinson, J, Liang, M, Boutet, S, Lyubimov, A.Y, Uervirojnangkoorn, M, Moriarty, N.W, Liebschner, D, Afonine, P.V, Watermann, D.G, Evans, G, Wernet, P, Dobbek, H, Weis, W.I, Brunger, A.T, Zwart, P.H, Adams, P.D, Zouni, A, Messinger, J, Bergmann, U, Sauter, N.K, Kern, J, Yachandra, V.K, Yano, J.
Deposit date:2016-10-03
Release date:2016-11-23
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.25000381 Å)
Cite:Structure of photosystem II and substrate binding at room temperature.
Nature, 540, 2016
6EYC
DownloadVisualize
BU of 6eyc by Molmil
Re-refinement of the MCM2-7 double hexamer using ISOLDE
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA replication licensing factor MCM2, DNA replication licensing factor MCM3, ...
Authors:Croll, T.I.
Deposit date:2017-11-11
Release date:2018-06-20
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:ISOLDE: a physically realistic environment for model building into low-resolution electron-density maps.
Acta Crystallogr D Struct Biol, 74, 2018
6DHH
DownloadVisualize
BU of 6dhh by Molmil
RT XFEL structure of Photosystem II 400 microseconds after the second illumination at 2.2 Angstrom resolution
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Kern, J, Chatterjee, R, Young, I.D, Fuller, F.D, Lassalle, L, Ibrahim, M, Gul, S, Fransson, T, Brewster, A.S, Alonso-Mori, R, Hussein, R, Zhang, M, Douthit, L, de Lichtenberg, C, Cheah, M.H, Shevela, D, Wersig, J, Seufert, I, Sokaras, D, Pastor, E, Weninger, C, Kroll, T, Sierra, R.G, Aller, P, Butryn, A, Orville, A.M, Liang, M, Batyuk, A, Koglin, J.E, Carbajo, S, Boutet, S, Moriarty, N.W, Holton, J.M, Dobbek, H, Adams, P.D, Bergmann, U, Sauter, N.K, Zouni, A, Messinger, J, Yano, J, Yachandra, V.K.
Deposit date:2018-05-20
Release date:2018-11-21
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of the intermediates of Kok's photosynthetic water oxidation clock.
Nature, 563, 2018
5V74
DownloadVisualize
BU of 5v74 by Molmil
Structure of the intact Haliangium ochraceum microcompartment shell
Descriptor: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml, Microcompartments protein
Authors:Sutter, M, Kerfeld, C.A.
Deposit date:2017-03-17
Release date:2017-06-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.51015472 Å)
Cite:Assembly principles and structure of a 6.5-MDa bacterial microcompartment shell.
Science, 356, 2017
1VK1
DownloadVisualize
BU of 1vk1 by Molmil
Conserved hypothetical protein from Pyrococcus furiosus Pfu-392566-001
Descriptor: Conserved hypothetical protein, DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, ...
Authors:Shah, A, Liu, Z.J, Tempel, W, Chen, L, Lee, D, Yang, H, Chang, J, Zhao, M, Ng, J, Rose, J, Brereton, P.S, Izumi, M, Jenney Jr, F.E, Poole II, F.L, Shah, C, Sugar, F.J, Adams, M.W.W, Richardson, D.C, Richardson, J.S, Wang, B.C, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2004-04-13
Release date:2004-08-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:(NZ)CH...O contacts assist crystallization of a ParB-like nuclease.
Bmc Struct.Biol., 7, 2007
9EOL
DownloadVisualize
BU of 9eol by Molmil
N-acetylglucosamine 6-phosphate dehydratase: inhibited 6-phosphogluconic acid state of NagS
Descriptor: 6-PHOSPHOGLUCONIC ACID, SULFATE ION, UPF0309 protein SCO4393
Authors:McNae, I.W, Abrahams, J.P, Li, C.
Deposit date:2024-03-15
Release date:2025-02-19
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:A new pathway in central metabolism mediates nutrient control of development and antibiotic production by Streptomyces
Biorxiv, 2024
9EOI
DownloadVisualize
BU of 9eoi by Molmil
Crystal structure of the GH19 endolysin from Pseudomonas aeruginosa
Descriptor: CITRATE ANION, Putative lytic enzyme
Authors:Edvardsen, P.K.T, Englund, A.N.B, Rohr, A.K, Vaaje-Kolstad, G.
Deposit date:2024-03-14
Release date:2025-02-19
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Characterization of the lytic enzyme of Pseudomonas aeruginosa
To Be Published
9F7O
DownloadVisualize
BU of 9f7o by Molmil
N-acetylglucosamine 6-phosphate dehydratase: apo form of NagS
Descriptor: SULFATE ION, UPF0309 protein SCO4393
Authors:Abrahams, J.P, Li, C.
Deposit date:2024-05-04
Release date:2025-02-19
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A new pathway in central metabolism mediates nutrient control of development and antibiotic production by Streptomyces
Biorxiv, 2024
9F7V
DownloadVisualize
BU of 9f7v by Molmil
N-acetylglucosamine 6-phosphate dehydratase: GlcNAc6P substrate-bound state of NagS
Descriptor: 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, SULFATE ION, UPF0309 protein SCO4393
Authors:Abrahams, J.P, Li, C.
Deposit date:2024-05-05
Release date:2025-02-19
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:A new pathway in central metabolism mediates nutrient control of development and antibiotic production by Streptomyces
Biorxiv, 2024
9EWF
DownloadVisualize
BU of 9ewf by Molmil
Cholera toxin B subunit in complex with fluorinated GM1
Descriptor: (2R,3S,4S,5R,6R)-6-dodecoxy-5-fluoranyl-2-(hydroxymethyl)oxane-3,4-diol, 2-deoxy-2-fluoro-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose, Cholera enterotoxin subunit B
Authors:Fan, J, Koehnke, J.
Deposit date:2024-04-03
Release date:2025-02-26
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Probing the Origin of Affinity in the GM1-Cholera Toxin Complex through Site-Selective Editing with Fluorine.
Acs Cent.Sci., 10, 2024
9EU4
DownloadVisualize
BU of 9eu4 by Molmil
GH29A alpha-L-fucosidase
Descriptor: Exported alpha-L-fucosidase protein, SULFATE ION, beta-L-fucopyranose
Authors:Yang, Y.Y, Zeuner, B, Morth, J.P.
Deposit date:2024-03-27
Release date:2025-03-05
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Structural elucidation and characterization of GH29A alpha-l-fucosidases and the effect of pH on their transglycosylation.
Febs J., 292, 2025
9EU3
DownloadVisualize
BU of 9eu3 by Molmil
GH29A alpha-L-fucosidase
Descriptor: Alpha-L-fucosidase, CHLORIDE ION, ZINC ION, ...
Authors:Yang, Y.Y, Zeuner, B, Morth, J.P.
Deposit date:2024-03-27
Release date:2025-03-05
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structural elucidation and characterization of GH29A alpha-l-fucosidases and the effect of pH on their transglycosylation.
Febs J., 292, 2025
7PPM
DownloadVisualize
BU of 7ppm by Molmil
SHP2 catalytic domain in complex with IRS1 (889-901) phosphopeptide (pSer-892, pTyr-896)
Descriptor: GLYCEROL, Insulin receptor substrate 1, Tyrosine-protein phosphatase non-receptor type 11,Tyrosine-protein phosphatase non-receptor type 11
Authors:Sok, P, Zeke, A, Remenyi, A.
Deposit date:2021-09-14
Release date:2022-09-07
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structural insights into the pSer/pThr dependent regulation of the SHP2 tyrosine phosphatase in insulin and CD28 signaling.
Nat Commun, 13, 2022
7PPN
DownloadVisualize
BU of 7ppn by Molmil
SHP2 catalytic domain in complex with CD28 (183-198) phosphopeptide (pTyr-191, p-Thr-195)
Descriptor: GLYCEROL, T-cell-specific surface glycoprotein CD28, Tyrosine-protein phosphatase non-receptor type 11,Tyrosine-protein phosphatase non-receptor type 11
Authors:Sok, P, Zeke, A, Remenyi, A.
Deposit date:2021-09-14
Release date:2022-09-07
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into the pSer/pThr dependent regulation of the SHP2 tyrosine phosphatase in insulin and CD28 signaling.
Nat Commun, 13, 2022
7PPL
DownloadVisualize
BU of 7ppl by Molmil
SHP2 catalytic domain in complex with IRS1 (625-639) phosphopeptide (pTyr-632, pSer-636)
Descriptor: ETHANOL, GLYCEROL, Insulin receptor substrate 1, ...
Authors:Sok, P, Zeke, A, Remenyi, A.
Deposit date:2021-09-14
Release date:2022-09-07
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Structural insights into the pSer/pThr dependent regulation of the SHP2 tyrosine phosphatase in insulin and CD28 signaling.
Nat Commun, 13, 2022
2SNS
DownloadVisualize
BU of 2sns by Molmil
STAPHYLOCOCCAL NUCLEASE. PROPOSED MECHANISM OF ACTION BASED ON STRUCTURE OF ENZYME-THYMIDINE 3(PRIME),5(PRIME)-BIPHOSPHATE-CALCIUM ION COMPLEX AT 1.5-ANGSTROMS RESOLUTION
Descriptor: CALCIUM ION, THERMONUCLEASE PRECURSOR, THYMIDINE-3',5'-DIPHOSPHATE
Authors:Legg, M.J, Cotton, F.A, Hazen Jr, E.E.
Deposit date:1982-05-14
Release date:1982-07-29
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:STAPHYLOCOCCAL NUCLEASE. PROPOSED MECHANISM OF ACTION BASED ON STRUCTURE OF ENZYME-THYMIDINE 3(PRIME),5(PRIME)-BIPHOSPHATE-CALCIUM ION COMPLEX AT 1.5-ANGSTROMS RESOLUTION
Thesis, Texas Agricultural and Mechanical University, 1977
6FOY
DownloadVisualize
BU of 6foy by Molmil
The crystal structure of P.fluorescens Kynurenine 3-monooxygenase (KMO) in complex with competitive inhibitor No. 9
Descriptor: 5-[2,3-bis(chloranyl)phenyl]furan-2-carboxylic acid, CALCIUM ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Levy, C.W, Leys, D.
Deposit date:2018-02-08
Release date:2019-08-21
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:A brain-permeable inhibitor of the neurodegenerative disease target kynurenine 3-monooxygenase prevents accumulation of neurotoxic metabolites.
Commun Biol, 2, 2019
9EYS
DownloadVisualize
BU of 9eys by Molmil
Structure of Far-Red Photosystem I from C. thermalis PCC 7203
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
Authors:Consoli, G, Tufaill, F, Murray, J.W, Fantuzzi, A, Rutherford, A.W.
Deposit date:2024-04-09
Release date:2025-04-23
Method:ELECTRON MICROSCOPY (2.01 Å)
Cite:Structure of Far-Red Photosystem I from C. thermalis PCC 7203
To Be Published
6FP1
DownloadVisualize
BU of 6fp1 by Molmil
The crystal structure of P.fluorescens Kynurenine 3-monooxygenase (KMO) in complex with competitive inhibitor No. 1
Descriptor: 2-(6-chloranyl-5,7-dimethyl-3-oxidanylidene-1,4-benzoxazin-4-yl)ethanoic acid, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Levy, C.W, Leys, D.
Deposit date:2018-02-08
Release date:2019-08-21
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:A brain-permeable inhibitor of the neurodegenerative disease target kynurenine 3-monooxygenase prevents accumulation of neurotoxic metabolites.
Commun Biol, 2, 2019
7PV9
DownloadVisualize
BU of 7pv9 by Molmil
Listeria monocytogene InlB (internalin B) residues 36-392 (internalin domain and B-repeat)
Descriptor: Internalin B
Authors:Geerds, C, Niemann, H.H.
Deposit date:2021-10-01
Release date:2022-01-26
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:A recurring packing contact in crystals of InlB pinpoints functional binding sites in the internalin domain and the B repeat.
Acta Crystallogr D Struct Biol, 78, 2022
9FTW
DownloadVisualize
BU of 9ftw by Molmil
Crystal structure of calcium-activated EndoU
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Fribourg, S, Campagne, S.
Deposit date:2024-06-25
Release date:2024-08-14
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Molecular Basis for the Calcium-Dependent Activation of the Ribonuclease EndoU.
Res Sq, 2024
9G3A
DownloadVisualize
BU of 9g3a by Molmil
Crystal Structure of the artificial protein METP in complex with cadmium ion at different temperature, 160 K
Descriptor: CADMIUM ION, METP ARTIFICIAL PROTEIN
Authors:Di Costanzo, L, La Gatta, S, Chino, M.
Deposit date:2024-07-12
Release date:2024-12-04
Last modified:2025-01-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into temperature-dependent dynamics of METPsc1, a miniaturized electron-transfer protein.
J.Inorg.Biochem., 264, 2025

239149

數據於2025-07-23公開中

PDB statisticsPDBj update infoContact PDBjnumon