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1BVG
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BU of 1bvg by Molmil
HIV-1 PROTEASE-DMP323 COMPLEX IN SOLUTION, NMR MINIMIZED AVERAGE STRUCTURE
Descriptor: HIV-1 PROTEASE, [4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL-PHENYL]METHYL)-4,7-BIS(PHEN YLMETHYL)]-2H-1,3-DIAZEPINONE
Authors:Yamazaki, T, Hinck, A.P, Wang, Y.-X, Nicholson, L.K, Torchia, D.A, Wingfield, P, Stahl, S.J, Kaufman, J.D, Chang, C, Domaille, P.J, Lam, P.Y.S.
Deposit date:1996-01-16
Release date:1996-08-17
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the HIV-1 protease complexed with DMP323, a novel cyclic urea-type inhibitor, determined by nuclear magnetic resonance spectroscopy.
Protein Sci., 5, 1996
6ISD
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BU of 6isd by Molmil
Crystal structure of Arabidopsis thaliana HPPD complexed with sulcotrione
Descriptor: 2-[2-chloro-4-(methylsulfonyl)benzoyl]cyclohexane-1,3-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Yang, W.C, Yang, G.F.
Deposit date:2018-11-16
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular insights into the mechanism of 4-hydroxyphenylpyruvate dioxygenase inhibition: enzyme kinetics, X-ray crystallography and computational simulations.
FEBS J., 286, 2019
6WAI
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BU of 6wai by Molmil
Crystal Structure of SmcR N142D from Vibrio vulnificus
Descriptor: 1,2-ETHANEDIOL, LuxR family transcriptional regulator, SULFATE ION
Authors:Newman, J.D, Russell, M.M, Gonzalez-Gutierrez, G, van Kessel, J.C.
Deposit date:2020-03-25
Release date:2020-06-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.583 Å)
Cite:The DNA binding domain of the Vibrio vulnificus SmcR transcription factor is flexible and binds diverse DNA sequences.
Nucleic Acids Res., 49, 2021
6WAE
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BU of 6wae by Molmil
Crystal Structure of 6X-His tagged SmcR
Descriptor: 1,2-ETHANEDIOL, LuxR family transcriptional regulator, SULFATE ION
Authors:Newman, J.D, Russell, M.M, Gonzalez-Gutierrez, G, van Kessel, J.C.
Deposit date:2020-03-25
Release date:2020-06-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:The DNA binding domain of the Vibrio vulnificus SmcR transcription factor is flexible and binds diverse DNA sequences.
Nucleic Acids Res., 49, 2021
6CSV
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BU of 6csv by Molmil
The structure of the Cep63-Cep152 heterotetrameric complex
Descriptor: Centrosomal protein of 63 kDa,Centrosomal protein of 152 kDa
Authors:Lee, E, Chen, Y, Zhang, L, Kim, T.S, Ahn, J.I, Park, J.E, Lee, K.S.
Deposit date:2018-03-21
Release date:2019-03-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular architecture of a cylindrical self-assembly at human centrosomes.
Nat Commun, 10, 2019
6WAG
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BU of 6wag by Molmil
Crystal Structure of SmcR S76A from Vibrio Vulnificus
Descriptor: 1,2-ETHANEDIOL, LuxR family transcriptional regulator, SULFATE ION
Authors:Newman, J.D, Russell, M.M, Gonzalez-Gutierrez, G, van Kessel, J.C.
Deposit date:2020-03-25
Release date:2020-06-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.575 Å)
Cite:The DNA binding domain of the Vibrio vulnificus SmcR transcription factor is flexible and binds diverse DNA sequences.
Nucleic Acids Res., 49, 2021
6WAF
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BU of 6waf by Molmil
Crystal Structure of SmcR N55I from Vibrio vulnificus
Descriptor: LuxR family transcriptional regulator, SULFATE ION
Authors:Newman, J.D, Russell, M.M, Gonzalez-Gutierrez, G, van Kessel, J.C.
Deposit date:2020-03-25
Release date:2020-06-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.381 Å)
Cite:The DNA binding domain of the Vibrio vulnificus SmcR transcription factor is flexible and binds diverse DNA sequences.
Nucleic Acids Res., 49, 2021
6WAH
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BU of 6wah by Molmil
Crystal Structure of SmcR L139R from Vibrio vulnificus
Descriptor: 1,2-ETHANEDIOL, LuxR family transcriptional regulator, SULFATE ION
Authors:Newman, J.D, Russell, M.M, Gonzalez-Gutierrez, G, van Kessel, J.C.
Deposit date:2020-03-25
Release date:2020-06-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:The DNA binding domain of the Vibrio vulnificus SmcR transcription factor is flexible and binds diverse DNA sequences.
Nucleic Acids Res., 49, 2021
6CSU
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BU of 6csu by Molmil
The structure of the Cep63-Cep152 heterotetrameric complex
Descriptor: Centrosomal protein of 152 kDa, Centrosomal protein of 63 kDa
Authors:Lee, E, Chen, Y, Zhang, L, Kim, T.S, Ahn, J.I, Park, J.E, Lee, K.S.
Deposit date:2018-03-21
Release date:2019-03-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular architecture of a cylindrical self-assembly at human centrosomes.
Nat Commun, 10, 2019
2FTU
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BU of 2ftu by Molmil
solution structure of domain 3 of RAP
Descriptor: Alpha-2-macroglobulin receptor-associated protein, domain 3
Authors:Lee, D, Walsh, J.D, Wang, Y.-X.
Deposit date:2006-01-24
Release date:2006-05-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:RAP uses a histidine switch to regulate its interaction with LRP in the ER and Golgi.
Mol.Cell, 22, 2006
8F4O
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BU of 8f4o by Molmil
Apo structure of the TPP riboswitch aptamer domain
Descriptor: IRIDIUM HEXAMMINE ION, TETRAETHYLENE GLYCOL, TPP riboswitch aptamer domain, ...
Authors:Lee, H.-K, Wang, Y.-X, Stagno, J.R.
Deposit date:2022-11-11
Release date:2023-05-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of Escherichia coli thiamine pyrophosphate-sensing riboswitch in the apo state.
Structure, 31, 2023
7KD1
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BU of 7kd1 by Molmil
Apo structure of the THF riboswitch aptamer domain
Descriptor: MAGNESIUM ION, SULFATE ION, tetrahydrofolate riboswitch aptamer domain
Authors:Wilt, H.M, Stagno, J.R, Wang, Y.-X.
Deposit date:2020-10-07
Release date:2021-03-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Tying the knot in the tetrahydrofolate (THF) riboswitch: A molecular basis for gene regulation.
J.Struct.Biol., 213, 2021
5E54
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BU of 5e54 by Molmil
Two apo structures of the adenine riboswitch aptamer domain determined using an X-ray free electron laser
Descriptor: MAGNESIUM ION, Vibrio vulnificus strain 93U204 chromosome II, adenine riboswitch aptamer domain
Authors:Stagno, J.R, Wang, Y.-X, Liu, Y, Bhandari, Y.R, Conrad, C.E, Nelson, G, Li, C, Wendel, D.R, White, T.A, Barty, A, Tuckey, R.A, Zatsepin, N.A, Grant, T.D, Fromme, P, Tan, K, Ji, X, Spence, J.C.H.
Deposit date:2015-10-07
Release date:2016-11-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography.
Nature, 541, 2017
6WJR
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BU of 6wjr by Molmil
Apo structure of the FMN riboswitch aptamer domain in the presence of sulfate
Descriptor: MAGNESIUM ION, RNA (112-MER), SULFATE ION
Authors:Wilt, H.M, Wang, Y.-X, Stagno, J.R.
Deposit date:2020-04-14
Release date:2020-09-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:FMN riboswitch aptamer symmetry facilitates conformational switching through mutually exclusive coaxial stacking configurations.
J Struct Biol X, 4, 2020
6WJS
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BU of 6wjs by Molmil
Apo structure of the FMN riboswitch aptamer domain in the presence of phosphate
Descriptor: PHOSPHATE ION, RNA (112-MER)
Authors:Wilt, H.M, Wang, Y.-X, Stagno, J.R.
Deposit date:2020-04-14
Release date:2020-09-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:FMN riboswitch aptamer symmetry facilitates conformational switching through mutually exclusive coaxial stacking configurations.
J Struct Biol X, 4, 2020
6VWV
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BU of 6vwv by Molmil
Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding
Descriptor: ADENINE, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Stagno, J.R, Wang, Y.-X.
Deposit date:2020-02-20
Release date:2020-11-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Synchronous RNA conformational changes trigger ordered phase transitions in crystals.
Nat Commun, 12, 2021
2KLJ
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BU of 2klj by Molmil
Solution Structure of gammaD-Crystallin with RDC and SAXS
Descriptor: Gamma-crystallin D
Authors:Wang, J, Zuo, X, Yu, P, Byeon, I, Jung, J, Gronenborn, A.M, Wang, Y.
Deposit date:2009-07-06
Release date:2009-10-06
Last modified:2024-05-22
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Determination of multicomponent protein structures in solution using global orientation and shape restraints.
J.Am.Chem.Soc., 131, 2009
2KLM
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BU of 2klm by Molmil
Solution Structure of L11 with SAXS and RDC
Descriptor: 50S ribosomal protein L11
Authors:Wang, J, Zuo, X, Yu, P, Schwieters, C.D, Wang, Y.
Deposit date:2009-07-06
Release date:2009-10-06
Last modified:2024-05-22
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Determination of multicomponent protein structures in solution using global orientation and shape restraints.
J.Am.Chem.Soc., 131, 2009
2KLK
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BU of 2klk by Molmil
Solution structure of GB1 A34F mutant with RDC and SAXS
Descriptor: IMMUNOGLOBULIN G-BINDING PROTEIN G
Authors:Wang, J, Zuo, X, Yu, P, Byeon, I.L, Jung, J, Schwieters, C.D, Gronenborn, A.M, Wang, Y.
Deposit date:2009-07-06
Release date:2009-10-06
Last modified:2024-05-22
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Determination of multicomponent protein structures in solution using global orientation and shape restraints.
J.Am.Chem.Soc., 131, 2009
2KRL
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BU of 2krl by Molmil
The ensemble of the solution global structures of the 102-nt ribosome binding structure element of the turnip crinkle virus 3' UTR RNA
Descriptor: RNA (102-MER)
Authors:Zuo, X, Wang, J, Yu, P, Eyler, D, Xu, H, Starich, M, Tiede, D, Simon, A, Kasprzak, W, Schwieters, C, Shapiro, B.
Deposit date:2009-12-18
Release date:2011-02-09
Last modified:2024-05-01
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Solution structure of the cap-independent translational enhancer and ribosome-binding element in the 3' UTR of turnip crinkle virus.
Proc.Natl.Acad.Sci.USA, 107, 2010
6PMO
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BU of 6pmo by Molmil
Co-crystal structure of the Geobacillus kaustophilus glyQ T-box riboswitch discriminator domain in complex with tRNA-Gly
Descriptor: IRIDIUM ION, MAGNESIUM ION, T-box riboswitch discriminator, ...
Authors:Li, S, Zhang, J.
Deposit date:2019-07-02
Release date:2019-11-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.65703368 Å)
Cite:Structural basis of amino acid surveillance by higher-order tRNA-mRNA interactions.
Nat.Struct.Mol.Biol., 26, 2019
3DB4
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BU of 3db4 by Molmil
Crystal structure of the tandem tudor domains of the E3 ubiquitin-protein ligase UHRF1
Descriptor: E3 ubiquitin-protein ligase UHRF1, SULFATE ION
Authors:Walker, J.R, Avvakumov, G.V, Xue, S, Dong, A, Li, Y, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2008-05-30
Release date:2008-09-16
Last modified:2012-04-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Recognition of multivalent histone states associated with heterochromatin by UHRF1 protein.
J.Biol.Chem., 286, 2011
6PQ7
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BU of 6pq7 by Molmil
Structure of the iMango-III fluorescent aptamer at room temperature.
Descriptor: MAGNESIUM ION, POTASSIUM ION, RNA (37-MER), ...
Authors:Trachman III, R.J, Ferre-D'Amare, A.R.
Deposit date:2019-07-08
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Co-crystal structure of the iMango-III fluorescent RNA aptamer using an X-ray free-electron laser.
Acta Crystallogr.,Sect.F, 75, 2019
3DB3
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BU of 3db3 by Molmil
Crystal structure of the tandem tudor domains of the E3 ubiquitin-protein ligase UHRF1 in complex with trimethylated histone H3-K9 peptide
Descriptor: E3 ubiquitin-protein ligase UHRF1, Trimethylated histone H3-K9 peptide
Authors:Walker, J.R, Avvakumov, G.V, Xue, S, Dong, A, Li, Y, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2008-05-30
Release date:2008-09-16
Last modified:2012-04-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Recognition of multivalent histone states associated with heterochromatin by UHRF1 protein.
J.Biol.Chem., 286, 2011
8V1I
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BU of 8v1i by Molmil
Crystal structure of human mascRNA
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Skeparnias, I, Zhang, J.
Deposit date:2023-11-20
Release date:2024-07-10
Last modified:2024-07-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of MALAT1 RNA maturation and mascRNA biogenesis.
Nat.Struct.Mol.Biol., 2024

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數據於2024-07-24公開中

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