7F9F
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![BU of 7f9f by Molmil](/molmil-images/mine/7f9f) | Thrombocorticin | Descriptor: | MAGNESIUM ION, Thrombocorticin | Authors: | Kageyama, H, Onodera, K, Sakai, R, Tanaka, Y, Freymann, D.M. | Deposit date: | 2021-07-04 | Release date: | 2022-07-06 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.411 Å) | Cite: | A marine sponge-derived lectin reveals hidden pathway for thrombopoietin receptor activation. Nat Commun, 13, 2022
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7F9G
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![BU of 7f9g by Molmil](/molmil-images/mine/7f9g) | Thrombocorticin in complex with Ca2+ and fucose | Descriptor: | CALCIUM ION, Thrombocorticin, alpha-L-fucopyranose | Authors: | Kageyama, H, Onodera, K, Sakai, R, Tanaka, Y. | Deposit date: | 2021-07-04 | Release date: | 2022-07-06 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.331 Å) | Cite: | A marine sponge-derived lectin reveals hidden pathway for thrombopoietin receptor activation. Nat Commun, 13, 2022
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7F9J
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![BU of 7f9j by Molmil](/molmil-images/mine/7f9j) | Thrombocorticin Q25K in complex with Ca2+ | Descriptor: | CALCIUM ION, Thrombocorticin Q25K mutant | Authors: | Kageyama, H, Onodera, K, Sakai, R, Tanaka, Y. | Deposit date: | 2021-07-04 | Release date: | 2022-07-06 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.1 Å) | Cite: | A marine sponge-derived lectin reveals hidden pathway for thrombopoietin receptor activation. Nat Commun, 13, 2022
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7F91
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![BU of 7f91 by Molmil](/molmil-images/mine/7f91) | |
7FBL
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![BU of 7fbl by Molmil](/molmil-images/mine/7fbl) | Thrombocorticin in complex with Ca2+ and mannose | Descriptor: | CALCIUM ION, Thrombocorticin, alpha-D-mannopyranose | Authors: | Kageyama, H, Onodera, K, Sakai, R, Tanaka, Y. | Deposit date: | 2021-07-11 | Release date: | 2022-07-13 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.419 Å) | Cite: | A marine sponge-derived lectin reveals hidden pathway for thrombopoietin receptor activation. Nat Commun, 13, 2022
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2Z2F
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![BU of 2z2f by Molmil](/molmil-images/mine/2z2f) | X-ray Crystal Structure of Bovine Stomach Lysozyme | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, Lysozyme C-2, SODIUM ION | Authors: | Akieda, D, Nonaka, Y, Watanabe, N, Tanaka, I, Kamiya, M, Aizawa, T, Nitta, K, Demura, M, Kawano, K. | Deposit date: | 2007-05-21 | Release date: | 2008-05-27 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Stability of Bovine Stomach Lysozyme in Acidic Condition To be Published
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7ETQ
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![BU of 7etq by Molmil](/molmil-images/mine/7etq) | Crystal structure of Pro-Met-Leu-Leu | Descriptor: | Pro-Met-Leu-Leu | Authors: | Kurumida, Y, Ikeda, K, Nakamichi, Y, Hirano, A, Kobayashi, K, Saito, Y, Kameda, T. | Deposit date: | 2021-05-13 | Release date: | 2022-05-18 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.04 Å) | Cite: | Crystal structure of Pro-Met-Leu-Leu To Be Published
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7ETP
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![BU of 7etp by Molmil](/molmil-images/mine/7etp) | Crystal structure of Pro-Phe-Leu-Phe | Descriptor: | Pro-Phe-Leu-Phe | Authors: | Kurumida, Y, Ikeda, K, Nakamichi, Y, Hirano, A, Kobayashi, K, Saito, Y, Kameda, T. | Deposit date: | 2021-05-13 | Release date: | 2022-05-18 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.09488 Å) | Cite: | Crystal structure of Pro-Phe-Leu-Phe To Be Published
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7ETN
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![BU of 7etn by Molmil](/molmil-images/mine/7etn) | Crystal structure of Pro-Phe-Leu-Ile | Descriptor: | PRO-PHE-LEU-ILE | Authors: | Kurumida, Y, Ikeda, K, Nakamichi, Y, Hirano, A, Kobayashi, K, Saito, Y, Kameda, T. | Deposit date: | 2021-05-13 | Release date: | 2022-05-25 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (0.82 Å) | Cite: | Crystal structure of Pro-Phe-Leu-Ile To Be Published
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2CUO
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![BU of 2cuo by Molmil](/molmil-images/mine/2cuo) | Collagen model peptide (PRO-PRO-GLY)9 | Descriptor: | COLLAGEN MODEL PEPTIDE (PRO-PRO-GLY)9 | Authors: | Hongo, C, Noguchi, K, Okuyama, K, Tanaka, Y, Nishino, N. | Deposit date: | 2005-05-27 | Release date: | 2005-06-14 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.33 Å) | Cite: | Repetitive interactions observed in the crystal structure of a collagen-model peptide, [(Pro-Pro-Gly)9]3 J.Biochem.(Tokyo), 138, 2005
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2F08
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![BU of 2f08 by Molmil](/molmil-images/mine/2f08) | Crystal structure of a major house dust mite allergen, Derf 2 | Descriptor: | O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL, mite allergen Der f II | Authors: | Mikami, B, Tanaka, Y, Minato, N, Suzuki, M, Korematsu, S. | Deposit date: | 2005-11-12 | Release date: | 2005-11-29 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal structure and some properties of a major house dust mite allergen, Derf 2 Biochem.Biophys.Res.Commun., 339, 2006
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1IX6
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![BU of 1ix6 by Molmil](/molmil-images/mine/1ix6) | Aspartate Aminotransferase Active Site Mutant V39F | Descriptor: | Aspartate Aminotransferase, PYRIDOXAL-5'-PHOSPHATE | Authors: | Hayashi, H, Mizuguchi, H, Miyahara, I, Nakajima, Y, Hirotsu, K, Kagamiyama, H. | Deposit date: | 2002-06-14 | Release date: | 2002-07-03 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Conformational change in aspartate aminotransferase on substrate binding induces strain in the catalytic group and enhances catalysis J.BIOL.CHEM., 278, 2003
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1IX8
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![BU of 1ix8 by Molmil](/molmil-images/mine/1ix8) | Aspartate Aminotransferase Active Site Mutant V39F/N194A | Descriptor: | Aspartate Aminotransferase, PYRIDOXAL-5'-PHOSPHATE | Authors: | Hayashi, H, Mizuguchi, H, Miyahara, I, Nakajima, Y, Hirotsu, K, Kagamiyama, H. | Deposit date: | 2002-06-14 | Release date: | 2002-07-03 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Conformational change in aspartate aminotransferase on substrate binding induces strain in the catalytic group and enhances catalysis J.BIOL.CHEM., 278, 2003
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1KH2
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1KOR
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![BU of 1kor by Molmil](/molmil-images/mine/1kor) | Crystal Structure of Thermus thermophilus HB8 Argininosuccinate Synthetase in complex with inhibitors | Descriptor: | ARGININE, Argininosuccinate Synthetase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... | Authors: | Goto, M, Nakajima, Y, Hirotsu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2001-12-22 | Release date: | 2002-04-03 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Crystal structure of argininosuccinate synthetase from Thermus thermophilus HB8. Structural basis for the catalytic action. J.Biol.Chem., 277, 2002
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2EEP
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![BU of 2eep by Molmil](/molmil-images/mine/2eep) | Prolyl Tripeptidyl Aminopeptidase Complexed with an Inhibitor | Descriptor: | Dipeptidyl aminopeptidase IV, putative, SULFATE ION, ... | Authors: | Xu, Y, Nakajima, Y, Ito, K, Yoshimoto, T. | Deposit date: | 2007-02-16 | Release date: | 2008-02-19 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Novel inhibitor for prolyl tripeptidyl aminopeptidase from Porphyromonas gingivalis and details of substrate-recognition mechanism J.Mol.Biol., 375, 2008
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1KH1
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1IX7
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![BU of 1ix7 by Molmil](/molmil-images/mine/1ix7) | Aspartate Aminotransferase Active Site Mutant V39F maleate complex | Descriptor: | Aspartate Aminotransferase, MALEIC ACID, PYRIDOXAL-5'-PHOSPHATE | Authors: | Hayashi, H, Mizuguchi, H, Miyahara, I, Nakajima, Y, Hirotsu, K, Kagamiyama, H. | Deposit date: | 2002-06-14 | Release date: | 2002-07-03 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Conformational change in aspartate aminotransferase on substrate binding induces strain in the catalytic group and enhances catalysis J.BIOL.CHEM., 278, 2003
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1X3X
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![BU of 1x3x by Molmil](/molmil-images/mine/1x3x) | Crystal Structure of Cytochrome b5 from Ascaris suum | Descriptor: | Cytochrome b5, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION | Authors: | Yokota, T, Nakajima, Y, Yamakura, F, Sugio, S, Hashimoto, M, Takamiya, S, Aoki, T. | Deposit date: | 2005-05-11 | Release date: | 2006-06-06 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Unique structure of Ascaris suum b5-type cytochrome: an additional alpha-helix and positively charged residues on the surface domain interact with redox partners Biochem.J., 394, 2006
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1X2J
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![BU of 1x2j by Molmil](/molmil-images/mine/1x2j) | Structural basis for the defects of human lung cancer somatic mutations in the repression activity of Keap1 on Nrf2 | Descriptor: | Kelch-like ECH-associated protein 1, SULFATE ION | Authors: | Padmanabhan, B, Tong, K.I, Nakamura, Y, Ohta, T, Scharlock, M, Kobayashi, A, Ohtsuji, M, Kang, M.-I, Yamamoto, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-04-25 | Release date: | 2006-03-07 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Structural basis for defects of keap1 activity provoked by its point mutations in lung cancer Mol.Cell, 21, 2006
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1X2R
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![BU of 1x2r by Molmil](/molmil-images/mine/1x2r) | Structural basis for the defects of human lung cancer somatic mutations in the repression activity of Keap1 on Nrf2 | Descriptor: | Kelch-like ECH-associated protein 1, Nuclear factor erythroid 2 related factor 2, SULFATE ION | Authors: | Padmanabhan, B, Tong, K.I, Nakamura, Y, Ohta, T, Scharlock, M, Kobayashi, A, Ohtsuji, M, Kang, M.-I, Yamamoto, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-04-26 | Release date: | 2006-03-07 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Structural basis for defects of keap1 activity provoked by its point mutations in lung cancer Mol.Cell, 21, 2006
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1WXL
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![BU of 1wxl by Molmil](/molmil-images/mine/1wxl) | Solution Structure of the HMG-box domain in the SSRP1 subunit of FACT | Descriptor: | Single-strand recognition protein | Authors: | Kasai, N, Tsunaka, Y, Ohki, I, Hirose, S, Morikawa, K, Tate, S. | Deposit date: | 2005-01-26 | Release date: | 2005-08-16 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution structure of the HMG-box domain in the SSRP1 subunit of FACT J.Biomol.Nmr, 32, 2005
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1XWP
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![BU of 1xwp by Molmil](/molmil-images/mine/1xwp) | Solution structure of AUCGCA loop | Descriptor: | 5'-R(*GP*GP*AP*GP*AP*UP*CP*GP*CP*AP*CP*UP*CP*CP*A)-3' | Authors: | Sakamoto, T, Oguro, A, Kawai, G, Ohtsu, T, Nakamura, Y. | Deposit date: | 2004-11-02 | Release date: | 2005-02-15 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | NMR structures of double loops of an RNA aptamer against mammalian initiation factor 4A Nucleic Acids Res., 33, 2005
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1XWU
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![BU of 1xwu by Molmil](/molmil-images/mine/1xwu) | Solution structure of ACAUAGA loop | Descriptor: | 5'-R(*CP*GP*AP*AP*AP*CP*AP*UP*AP*GP*AP*UP*UP*CP*GP*A)-3' | Authors: | Sakamoto, T, Oguro, A, Kawai, G, Ohtsu, T, Nakamura, Y. | Deposit date: | 2004-11-02 | Release date: | 2005-02-15 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | NMR structures of double loops of an RNA aptamer against mammalian initiation factor 4A Nucleic Acids Res., 33, 2005
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2DDH
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![BU of 2ddh by Molmil](/molmil-images/mine/2ddh) | Crystal Structure of Acyl-CoA oxidase complexed with 3-OH-dodecanoate | Descriptor: | (3R)-3-HYDROXYDODECANOIC ACID, Acyl-CoA oxidase, FLAVIN-ADENINE DINUCLEOTIDE | Authors: | Keiji, T, Nakajima, Y, Miyahara, I, Hirotsu, K. | Deposit date: | 2006-01-29 | Release date: | 2006-03-28 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.07 Å) | Cite: | Three-Dimensional Structure of Rat-Liver Acyl-CoA Oxidase in Complex with a Fatty Acid: Insights into Substrate-Recognition and Reactivity toward Molecular Oxygen. J.Biochem.(Tokyo), 139, 2006
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