Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7Q9M
DownloadVisualize
BU of 7q9m by Molmil
Beta-53 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-53 fab heavy chain, ...
Authors:Duyvesteyn, H.M.E, Ren, J, Stuart, D.I.
Deposit date:2021-11-12
Release date:2021-12-15
Last modified:2022-01-26
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:The antibody response to SARS-CoV-2 Beta underscores the antigenic distance to other variants.
Cell Host Microbe, 30, 2022
7Q9P
DownloadVisualize
BU of 7q9p by Molmil
Beta-06 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-06 heavy chain, ...
Authors:Duyvesteyn, H.M.E, Ren, J, Stuart, D.I.
Deposit date:2021-11-12
Release date:2021-12-15
Last modified:2022-01-26
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:The antibody response to SARS-CoV-2 Beta underscores the antigenic distance to other variants.
Cell Host Microbe, 30, 2022
7QUU
DownloadVisualize
BU of 7quu by Molmil
Red1-Iss10 complex
Descriptor: NURS complex subunit red1, Uncharacterized protein C7D4.14c
Authors:Mackereth, C.D, Kadlec, J, Laroussi, H.
Deposit date:2022-01-18
Release date:2022-09-07
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structural analysis of Red1 as a conserved scaffold of the RNA-targeting MTREC/PAXT complex.
Nat Commun, 13, 2022
7QY5
DownloadVisualize
BU of 7qy5 by Molmil
Crystal structure of the S.pombe Ars2-Red1 complex.
Descriptor: NURS complex subunit pir2, RNA elimination defective protein Red1, ZINC ION
Authors:Foucher, A.E, Kadlec, J.
Deposit date:2022-01-27
Release date:2022-11-16
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Structural analysis of Red1 as a conserved scaffold of the RNA-targeting MTREC/PAXT complex.
Nat Commun, 13, 2022
8ASY
DownloadVisualize
BU of 8asy by Molmil
SARS-CoV-2 Omicron BA.2.75 RBD in complex with ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, GLYCEROL, ...
Authors:Zhou, D, Huo, J, Ren, J, Stuart, D.I.
Deposit date:2022-08-22
Release date:2023-01-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:A delicate balance between antibody evasion and ACE2 affinity for Omicron BA.2.75.
Cell Rep, 42, 2022
1VAM
DownloadVisualize
BU of 1vam by Molmil
CONCANAVALIN A COMPLEX WITH 4'-NITROPHENYL-ALPHA-D-MANNOPYRANOSIDE
Descriptor: 4-nitrophenyl alpha-D-mannopyranoside, CALCIUM ION, CONCANAVALIN A, ...
Authors:Kanellopoulos, P.N, Tucker, P.A, Hamodrakas, S.J.
Deposit date:1996-01-08
Release date:1997-01-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The crystal structure of the complexes of concanavalin A with 4'-nitrophenyl-alpha-D-mannopyranoside and 4'-nitrophenyl-alpha-D-glucopyranoside.
J.Struct.Biol., 116, 1996
1CJP
DownloadVisualize
BU of 1cjp by Molmil
CONCANAVALIN A COMPLEX WITH 4'-METHYLUMBELLIFERYL-ALPHA-D-GLUCOPYRANOSIDE
Descriptor: 4-METHYLUMBELLIFERYL-ALPHA-D-GLUCOSE, CALCIUM ION, CONCANAVALIN A, ...
Authors:Hamodrakas, S.J, Kanellopoulos, P.N, Tucker, P.A.
Deposit date:1996-10-03
Release date:1997-10-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:The crystal structure of the complex of concanavalin A with 4'-methylumbelliferyl-alpha-D-glucopyranoside.
J.Struct.Biol., 118, 1997
4ZKV
DownloadVisualize
BU of 4zkv by Molmil
Crystal structure of human histidine triad nucleotide-binding protein 1 (hHINT1) refined to 1.92A at P21 space group
Descriptor: Histidine triad nucleotide-binding protein 1, SULFATE ION
Authors:Dolot, R.M, Seda, A, Nawrot, B.
Deposit date:2015-04-30
Release date:2016-03-02
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Crystallographic studies of the complex of human HINT1 protein with a non-hydrolyzable analog of Ap4A.
Int.J.Biol.Macromol., 87, 2016
7NEG
DownloadVisualize
BU of 7neg by Molmil
Crystal structure of the N501Y mutant receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-269 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody COVOX-269 Fab heavy chain, Antibody COVOX-269 Fab light chain, ...
Authors:Zhou, D, Ren, J, Stuart, D.
Deposit date:2021-02-04
Release date:2021-03-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Reduced neutralization of SARS-CoV-2 B.1.1.7 variant by convalescent and vaccine sera.
Cell, 184, 2021
7NEH
DownloadVisualize
BU of 7neh by Molmil
Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-269 Fab
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Zhou, D, Ren, J, Stuart, D.
Deposit date:2021-02-04
Release date:2021-03-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Reduced neutralization of SARS-CoV-2 B.1.1.7 variant by convalescent and vaccine sera.
Cell, 184, 2021
1VAL
DownloadVisualize
BU of 1val by Molmil
CONCANAVALIN A COMPLEX WITH 4'-NITROPHENYL-ALPHA-D-GLUCOPYRANOSIDE
Descriptor: 4-nitrophenyl alpha-D-glucopyranoside, CALCIUM ION, CONCANAVALIN A, ...
Authors:Kanellopoulos, P.N, Tucker, P.A, Hamodrakas, S.J.
Deposit date:1996-01-08
Release date:1997-01-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:The crystal structure of the complexes of concanavalin A with 4'-nitrophenyl-alpha-D-mannopyranoside and 4'-nitrophenyl-alpha-D-glucopyranoside.
J.Struct.Biol., 116, 1996
1MQS
DownloadVisualize
BU of 1mqs by Molmil
Crystal structure of Sly1p in complex with an N-terminal peptide of Sed5p
Descriptor: Integral Membrane Protein SED5, Sly1 Protein
Authors:Bracher, A, Weissenhorn, W.
Deposit date:2002-09-17
Release date:2002-11-20
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for the Golgi membrane recruitment of Sly1p by Sed5p
Embo J., 21, 2002
2E9R
DownloadVisualize
BU of 2e9r by Molmil
Foot-and-mouth disease virus RNA-dependent RNA polymerase in complex with a template-primer RNA and with ribavirin
Descriptor: 5'-R(*CP*AP*UP*GP*GP*GP*CP*CP*C)-3', 5'-R(*CP*CP*C*GP*GP*GP*CP*CP*C)-3', MAGNESIUM ION, ...
Authors:Ferrer-Orta, C, Arias, A, Perez-Luque, R, Escarmis, C, Domingo, E, Verdaguer, N.
Deposit date:2007-01-26
Release date:2007-06-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Sequential structures provide insights into the fidelity of RNA replication
Proc.Natl.Acad.Sci.Usa, 104, 2007
2EC0
DownloadVisualize
BU of 2ec0 by Molmil
RNA-dependent RNA polymerase of foot-and-mouth disease virus in complex with a template-primer RNA and ATP
Descriptor: 5'-R(*GP*GP*GP*CP*CP*CP*A)-3', 5'-R(P*AP*UP*GP*GP*GP*CP*CP*C)-3', MAGNESIUM ION, ...
Authors:Ferrer-Orta, C, Arias, A, Perez-Luque, R, Escarmis, C, Domingo, E, Verdaguer, N.
Deposit date:2007-02-09
Release date:2007-06-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Sequential structures provide insights into the fidelity of RNA replication
Proc.Natl.Acad.Sci.Usa, 104, 2007
2E9T
DownloadVisualize
BU of 2e9t by Molmil
Foot-and-mouth disease virus RNA-polymerase RNA dependent in complex with a template-primer RNA and 5F-UTP
Descriptor: 5'-R(*GP*GP*GP*CP*CP*CP*(5FU))-3', 5'-R(P*UP*AP*GP*GP*GP*CP*CP*C)-3', MAGNESIUM ION, ...
Authors:Ferrer-Orta, C, Arias, A, Perez-Luque, R, Escarmis, C, Domingo, E, Verdaguer, N.
Deposit date:2007-01-26
Release date:2007-06-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Sequential structures provide insights into the fidelity of RNA replication
Proc.Natl.Acad.Sci.Usa, 104, 2007
6CEZ
DownloadVisualize
BU of 6cez by Molmil
Crystal Structure of Rabbit Anti-HIV-1 gp120 V2 Fab 16C2 in complex with V2 peptide ConB
Descriptor: HIV-1 gp120 V2 Peptide Con B, Heavy chain of Fab fragment of rabbit anti-HIV1 gp120 V2 mAb 16C2, Light chain of Fab fragment of rabbit anti-HIV1 gp120 V2 mAb 16C2
Authors:Kong, X, Pan, R.
Deposit date:2018-02-13
Release date:2018-09-12
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:Select gp120 V2 domain specific antibodies derived from HIV and SIV infection and vaccination inhibit gp120 binding to alpha 4 beta 7.
PLoS Pathog., 14, 2018
3O1C
DownloadVisualize
BU of 3o1c by Molmil
High resolution crystal structure of histidine triad nucleotide-binding protein 1 (Hint1) C38A mutant from rabbit complexed with Adenosine
Descriptor: ADENOSINE, Histidine triad nucleotide-binding protein 1, SODIUM ION
Authors:Dolot, R.M, Ozga, M, Krakowiak, A.K, Nawrot, B, Stec, W.J.
Deposit date:2010-07-21
Release date:2010-08-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Histidine Triad Nucleotide-binding Protein 1 (HINT-1) Phosphoramidase Transforms Nucleoside 5'-O-Phosphorothioates to Nucleoside 5'-O-Phosphates.
J.Biol.Chem., 285, 2010
3O1X
DownloadVisualize
BU of 3o1x by Molmil
High resolution crystal structure of histidine triad nucleotide-binding protein 1 (Hint1) C84A mutant from rabbit complexed with adenosine
Descriptor: ADENOSINE, Histidine triad nucleotide-binding protein 1, SODIUM ION
Authors:Dolot, R.M, Ozga, M, Krakowiak, A.K, Nawrot, B, Stec, W.J.
Deposit date:2010-07-22
Release date:2010-08-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Histidine Triad Nucleotide-binding Protein 1 (HINT-1) Phosphoramidase Transforms Nucleoside 5'-O-Phosphorothioates to Nucleoside 5'-O-Phosphates.
J.Biol.Chem., 285, 2010
3O1Z
DownloadVisualize
BU of 3o1z by Molmil
High resolution crystal structure of histidine triad nucleotide-binding protein 1 (Hint1) double cysteine mutant from rabbit
Descriptor: Histidine triad nucleotide-binding protein 1
Authors:Dolot, R.M, Ozga, M, Krakowiak, A.K, Nawrot, B, Stec, W.J.
Deposit date:2010-07-22
Release date:2010-08-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Histidine Triad Nucleotide-binding Protein 1 (HINT-1) Phosphoramidase Transforms Nucleoside 5'-O-Phosphorothioates to Nucleoside 5'-O-Phosphates.
J.Biol.Chem., 285, 2010
1K9T
DownloadVisualize
BU of 1k9t by Molmil
Chitinase a complexed with tetra-N-acetylchitotriose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHITINASE A
Authors:Prag, G, Tucker, P.A, Oppenheim, A.B.
Deposit date:2001-10-30
Release date:2002-11-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Complex Structures of Chitinase A Mutant with Oligonag Provide Insight Into the Enzymatic Mechanism
To be Published
1FVF
DownloadVisualize
BU of 1fvf by Molmil
CRYSTAL STRUCTURE ANALYSIS OF NEURONAL SEC1 FROM THE SQUID L. PEALEI
Descriptor: SEC1
Authors:Bracher, A, Weissenhorn, W.
Deposit date:2000-09-19
Release date:2001-01-31
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structures of neuronal squid Sec1 implicate inter-domain hinge movement in the release of t-SNAREs.
J.Mol.Biol., 306, 2001
1FVH
DownloadVisualize
BU of 1fvh by Molmil
CRYSTAL STRUCTURE ANALYSIS OF NEURONAL SEC1 FROM THE SQUID L. PEALEI
Descriptor: SEC1
Authors:Bracher, A, Weissenhorn, W.
Deposit date:2000-09-19
Release date:2001-01-31
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of neuronal squid Sec1 implicate inter-domain hinge movement in the release of t-SNAREs.
J.Mol.Biol., 306, 2001
1DEL
DownloadVisualize
BU of 1del by Molmil
DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE COMPLEXED WITH DEOXY-GMP AND AMP
Descriptor: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, ADENOSINE MONOPHOSPHATE, DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE, ...
Authors:Teplyakov, A, Sebastiao, P.
Deposit date:1996-01-09
Release date:1997-01-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of bacteriophage T4 deoxynucleotide kinase with its substrates dGMP and ATP.
EMBO J., 15, 1996
1DEK
DownloadVisualize
BU of 1dek by Molmil
DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE COMPLEXED WITH DEOXY-GMP
Descriptor: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE, MAGNESIUM ION
Authors:Teplyakov, A, Sebastiao, P.
Deposit date:1996-01-09
Release date:1997-01-11
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of bacteriophage T4 deoxynucleotide kinase with its substrates dGMP and ATP.
EMBO J., 15, 1996
2IV1
DownloadVisualize
BU of 2iv1 by Molmil
SITE DIRECTED MUTAGENESIS OF KEY RESIDUES INVOLVED IN THE CATALYTIC MECHANISM OF CYANASE
Descriptor: CHLORIDE ION, CYANATE HYDRATASE, SULFATE ION
Authors:Guilloton, M, Walsh, M.A, Joachimiak, A, Anderson, P.M.
Deposit date:2006-06-08
Release date:2008-10-28
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:A Twin Set of Low Pka Arginines Ensures the Concerted Acid Base Catalytic Mechanism of Cyanase
To be Published

223532

數據於2024-08-07公開中

PDB statisticsPDBj update infoContact PDBjnumon