Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3FDE
DownloadVisualize
BU of 3fde by Molmil
Mouse UHRF1 SRA domain bound with hemi-methylated CpG DNA, crystal structure in space group C222(1) at 1.4 A resolution
Descriptor: 1,2-ETHANEDIOL, 5'-D(*CP*CP*AP*TP*GP*(5CM)P*GP*CP*TP*GP*AP*C)-3', 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP*GP*G)-3', ...
Authors:Hashimoto, H, Horton, J.R, Zhang, X, Cheng, X.
Deposit date:2008-11-25
Release date:2009-01-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:UHRF1, a modular multi-domain protein, regulates replication-coupled crosstalk between DNA methylation and histone modifications.
Epigenetics, 4, 2009
3F8J
DownloadVisualize
BU of 3f8j by Molmil
Mouse UHRF1 SRA domain bound with hemi-methylated CpG, crystal structure in space group C222(1)
Descriptor: 5'-D(*DCP*DCP*DAP*DTP*DGP*(5CM)P*DGP*DCP*DTP*DGP*DAP*DC)-3', 5'-D(*DGP*DTP*DCP*DAP*DGP*DCP*DGP*DCP*DAP*DTP*DGP*DG)-3', E3 ubiquitin-protein ligase UHRF1, ...
Authors:Hashimoto, H, Horton, J.R, Zhang, X, Cheng, X.
Deposit date:2008-11-12
Release date:2009-01-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:UHRF1, a modular multi-domain protein, regulates replication-coupled crosstalk between DNA methylation and histone modifications.
Epigenetics, 4, 2009
6IYA
DownloadVisualize
BU of 6iya by Molmil
Structure of the DNA binding domain of antitoxin CopASO
Descriptor: Transcriptional regulator CopG family
Authors:Zhao, R, Li, F, Liu, L, Zhang, X.
Deposit date:2018-12-14
Release date:2019-01-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure and allosteric coupling of type II antitoxin CopASO.
Biochem.Biophys.Res.Commun., 514, 2019
6CIJ
DownloadVisualize
BU of 6cij by Molmil
Cryo-EM structure of mouse RAG1/2 HFC complex containing partial HMGB1 linker(3.9 A)
Descriptor: CALCIUM ION, DNA (30-MER), DNA (41-MER), ...
Authors:Chen, X, Kim, M, Chuenchor, W, Cui, Y, Zhang, X, Zhou, Z.H, Gellert, M, Yang, W.
Deposit date:2018-02-24
Release date:2018-04-25
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cracking the DNA Code for V(D)J Recombination.
Mol. Cell, 70, 2018
3FPD
DownloadVisualize
BU of 3fpd by Molmil
G9a-like protein lysine methyltransferase inhibition by BIX-01294
Descriptor: Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, N-(1-benzylpiperidin-4-yl)-6,7-dimethoxy-2-(4-methyl-1,4-diazepan-1-yl)quinazolin-4-amine, ...
Authors:Chang, Y, Zhang, X, Horton, J.R, Cheng, X.
Deposit date:2009-01-05
Release date:2009-02-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for G9a-like protein lysine methyltransferase inhibition by BIX-01294.
Nat.Struct.Mol.Biol., 16, 2009
8AJ8
DownloadVisualize
BU of 8aj8 by Molmil
Structure of p110 gamma bound to the p84 regulatory subunit
Descriptor: Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform, Phosphoinositide 3-kinase regulatory subunit 6
Authors:Burke, J.E, Williams, R.L, Zhang, X.
Deposit date:2022-07-27
Release date:2023-03-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (8.5 Å)
Cite:Molecular basis for differential activation of p101 and p84 complexes of PI3K gamma by Ras and GPCRs.
Cell Rep, 42, 2023
2J48
DownloadVisualize
BU of 2j48 by Molmil
NMR structure of the pseudo-receiver domain of the CikA protein.
Descriptor: TWO-COMPONENT SENSOR KINASE
Authors:Gao, T, Zhang, X, Golden, S.S, LiWang, A.
Deposit date:2006-08-26
Release date:2007-03-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure of the pseudo-receiver domain of CikA.
Protein Sci., 16, 2007
2ICV
DownloadVisualize
BU of 2icv by Molmil
Kinetic and Crystallographic Studies of a Redesigned Manganese-Binding Site in Cytochrome c Peroxidase
Descriptor: COBALT (II) ION, Cytochrome c peroxidase, mitochondrial, ...
Authors:Pfister, T, Mirarefi, A.Y, Gengenbach, A.J, Zhao, X, Conaster, C.D.N, Gao, Y.G, Robinson, H, Zukoski, C.F, Wang, A.H.J, Lu, Y.
Deposit date:2006-09-13
Release date:2007-08-28
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Kinetic and crystallographic studies of a redesigned manganese-binding site in cytochrome c peroxidase
J.Biol.Inorg.Chem., 12, 2007
6J7G
DownloadVisualize
BU of 6j7g by Molmil
Human H-ferritin mutant-C90A/C102A/C130A/D144C
Descriptor: Ferritin heavy chain
Authors:Zang, J, Chen, H, Zhang, X, Zhao, G.
Deposit date:2019-01-18
Release date:2019-10-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.868 Å)
Cite:Disulfide-mediated conversion of 8-mer bowl-like protein architecture into three different nanocages.
Nat Commun, 10, 2019
6IJJ
DownloadVisualize
BU of 6ijj by Molmil
Photosystem I of Chlamydomonas reinhardtii
Descriptor: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
Authors:Pan, X, Ma, J, Su, X, Liu, Z, Zhang, X, Li, M.
Deposit date:2018-10-10
Release date:2019-03-20
Last modified:2019-05-01
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Antenna arrangement and energy transfer pathways of a green algal photosystem-I-LHCI supercomplex.
Nat Plants, 5, 2019
6IJO
DownloadVisualize
BU of 6ijo by Molmil
Photosystem I of Chlamydomonas reinhardtii
Descriptor: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
Authors:Pan, X, Ma, J, Su, X, Liu, Z, Zhang, X, Li, M.
Deposit date:2018-10-10
Release date:2019-03-20
Last modified:2019-05-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Antenna arrangement and energy transfer pathways of a green algal photosystem-I-LHCI supercomplex.
Nat Plants, 5, 2019
6IPO
DownloadVisualize
BU of 6ipo by Molmil
Ferritin mutant C90A/C102A/C130A/D144C
Descriptor: Ferritin heavy chain, MAGNESIUM ION
Authors:Zang, J, Chen, H, Zhang, X, Zhao, G.
Deposit date:2018-11-03
Release date:2019-03-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.998 Å)
Cite:Disulfide-mediated conversion of 8-mer bowl-like protein architecture into three different nanocages.
Nat Commun, 10, 2019
7FAU
DownloadVisualize
BU of 7fau by Molmil
Structure Determination of the NB1B11-RBD Complex
Descriptor: NB_1B11, Spike protein S1, ZINC ION
Authors:Shi, Z.Z, Li, X.X, Wang, L, Sun, Z.C, Zhang, H.W, Chen, X.C, Cui, Q.Q, Qiao, H.R, Lan, Z.Y, Zhang, X.
Deposit date:2021-07-07
Release date:2022-06-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structural basis of nanobodies neutralizing SARS-CoV-2 variants.
Structure, 30, 2022
8DOL
DownloadVisualize
BU of 8dol by Molmil
Mechanism of regulation of the Helicobacter pylori Cagbeta ATPase by CagZ
Descriptor: Cag pathogenicity island protein (Cag5), DI(HYDROXYETHYL)ETHER, SULFATE ION
Authors:Wu, X, Zhao, Y, Yang, W, Sun, L, Ye, X, Jiang, M, Wang, Q, Wang, Q, Zhang, X, Wu, Y.
Deposit date:2022-07-13
Release date:2023-02-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Mechanism of regulation of the Helicobacter pylori Cag beta ATPase by CagZ.
Nat Commun, 14, 2023
1DP4
DownloadVisualize
BU of 1dp4 by Molmil
DIMERIZED HORMONE BINDING DOMAIN OF THE ATRIAL NATRIURETIC PEPTIDE RECEPTOR
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ATRIAL NATRIURETIC PEPTIDE RECEPTOR A, ...
Authors:van den Akker, F, Zhang, X, Miyagi, M, Huo, X, Misono, K.S, Yee, V.C.
Deposit date:1999-12-23
Release date:2000-07-12
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the dimerized hormone-binding domain of a guanylyl-cyclase-coupled receptor.
Nature, 406, 2000
6S8N
DownloadVisualize
BU of 6s8n by Molmil
Cryo-EM structure of LptB2FGC in complex with lipopolysaccharide
Descriptor: 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione, DODECYL-BETA-D-MALTOSIDE, Inner membrane protein yjgQ, ...
Authors:Tang, X.D, Chang, S.H, Luo, Q.H, Zhang, Z.Y, Qiao, W, Xu, C.H, Zhang, C.B, Niu, Y, Yang, W.X, Wang, T, Zhang, Z.B, Zhu, X.F, Dong, C.J, Zhang, X, Dong, H.H.
Deposit date:2019-07-10
Release date:2019-09-25
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cryo-EM structures of lipopolysaccharide transporter LptB2FGC in lipopolysaccharide or AMP-PNP-bound states reveal its transport mechanism.
Nat Commun, 10, 2019
6S8H
DownloadVisualize
BU of 6s8h by Molmil
Cryo-EM structure of LptB2FG in complex with LPS
Descriptor: (2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-[(2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-5-[(2~{S},3~{S},4~{R},5~{R},6~{R})-6-[(1~{S})-1,2-bis(oxidanyl)ethyl]-4-[(2~{R},3~{S},4~{R},5~{S},6~{R})-6-[(1~{S})-2-[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-[(1~{S})-1,2-bis(oxidanyl)ethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-1-oxidanyl-ethyl]-3,4-bis(oxidanyl)-5-phosphonooxy-oxan-2-yl]oxy-3-oxidanyl-5-phosphonooxy-oxan-2-yl]oxy-2-carboxy-2-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-5-[[(3~{R})-3-dodecanoyloxytetradecanoyl]amino]-6-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-3-oxidanyl-5-[[(3~{R})-3-oxidanyltetradecanoyl]amino]-4-[(3~{R})-3-oxidanyltetradecanoyl]oxy-6-phosphonooxy-oxan-2-yl]methoxy]-3-phosphonooxy-4-[(3~{R})-3-tetradecanoyloxytetradecanoyl]oxy-oxan-2-yl]methoxy]oxan-4-yl]oxy-4,5-bis(oxidanyl)oxane-2-carboxylic acid, 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Tang, X.D, Chang, S.H, Luo, Q.H, Zhang, Z.Y, Qiao, W, Xu, C.H, Zhang, C.B, Niu, Y, Yang, W.X, Wang, T, Zhang, Z.B, Zhu, X.F, Dong, C.J, Zhang, X, Dong, H.H.
Deposit date:2019-07-10
Release date:2019-09-25
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structures of lipopolysaccharide transporter LptB2FGC in lipopolysaccharide or AMP-PNP-bound states reveal its transport mechanism.
Nat Commun, 10, 2019
6S8G
DownloadVisualize
BU of 6s8g by Molmil
Cryo-EM structure of LptB2FGC in complex with AMP-PNP
Descriptor: Inner membrane protein yjgQ, LPS export ABC transporter permease LptF, Lipopolysaccharide ABC transporter, ...
Authors:Tang, X.D, Chang, S.H, Luo, Q.H, Zhang, Z.Y, Qiao, W, Xu, C.H, Zhang, C.B, Niu, Y, Yang, W.X, Wang, T, Zhang, Z.B, Zhu, X.F, Dong, C.J, Zhang, X, Dong, H.H.
Deposit date:2019-07-10
Release date:2019-09-25
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM structures of lipopolysaccharide transporter LptB2FGC in lipopolysaccharide or AMP-PNP-bound states reveal its transport mechanism.
Nat Commun, 10, 2019
7C9V
DownloadVisualize
BU of 7c9v by Molmil
E30 F-particle in complex with FcRn
Descriptor: Beta-2-microglobulin, IgG receptor FcRn large subunit p51, MYRISTIC ACID, ...
Authors:Wang, K, Zhu, L, Sun, Y, Li, M, Zhao, X, Cui, L, Zhang, L, Gao, G, Zhai, W, Zhu, F, Rao, Z, Wang, X.
Deposit date:2020-06-07
Release date:2020-07-29
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structures of Echovirus 30 in complex with its receptors inform a rational prediction for enterovirus receptor usage.
Nat Commun, 11, 2020
7C9S
DownloadVisualize
BU of 7c9s by Molmil
Echovirus 30 F-particle
Descriptor: SPHINGOSINE, VP1, VP2, ...
Authors:Wang, K, Sun, Y, Zhu, L, Li, M, Zhao, X, Cui, L, Zhang, L, Gao, G, Zhai, W, Zhu, F, Rao, Z, Wang, X.
Deposit date:2020-06-07
Release date:2020-07-29
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structures of Echovirus 30 in complex with its receptors inform a rational prediction for enterovirus receptor usage.
Nat Commun, 11, 2020
7C9U
DownloadVisualize
BU of 7c9u by Molmil
Echovirus 30 E-particle
Descriptor: VP0, VP1, VP3
Authors:Wang, K, Zhu, L, Sun, Y, Li, M, Zhao, X, Cui, L, Zhang, L, Gao, G, Zhai, W, Zhu, F, Rao, Z, Wang, X.
Deposit date:2020-06-07
Release date:2020-07-29
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structures of Echovirus 30 in complex with its receptors inform a rational prediction for enterovirus receptor usage.
Nat Commun, 11, 2020
7C9W
DownloadVisualize
BU of 7c9w by Molmil
E30 F-particle in complex with CD55
Descriptor: Complement decay-accelerating factor, MYRISTIC ACID, SPHINGOSINE, ...
Authors:Wang, K, Zhu, L, Sun, Y, Li, M, Zhao, X, Cui, L, Zhang, L, Gao, G, Zhai, W, Zhu, F, Rao, Z, Wang, X.
Deposit date:2020-06-07
Release date:2020-07-29
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structures of Echovirus 30 in complex with its receptors inform a rational prediction for enterovirus receptor usage.
Nat Commun, 11, 2020
7C9T
DownloadVisualize
BU of 7c9t by Molmil
Echovirus 30 A-particle
Descriptor: VP1, VP2, VP3
Authors:Wang, K, Zhu, L, Sun, Y, Li, M, Zhao, X, Cui, L, Zhang, L, Gao, G, Zhai, W, Zhu, F, Rao, Z, Wang, X.
Deposit date:2020-06-07
Release date:2020-07-29
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structures of Echovirus 30 in complex with its receptors inform a rational prediction for enterovirus receptor usage.
Nat Commun, 11, 2020
7ARM
DownloadVisualize
BU of 7arm by Molmil
LolCDE in complex with lipoprotein and LolA
Descriptor: (2S)-3-hydroxypropane-1,2-diyl dihexadecanoate, LPP, Lipoprotein-releasing ABC transporter permease subunit LolC, ...
Authors:Tang, X.D, Chang, S.H, Zhang, K, Wang, T, Luo, Q.H, Qiao, W, Wang, C, Shen, C.R, Zhang, Z.B, Zhang, Z.Y, Zhu, X.F, Wei, X.W, Dong, C.J, Zhang, X, Dong, H.H.
Deposit date:2020-10-25
Release date:2021-04-07
Last modified:2021-04-28
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis for bacterial lipoprotein relocation by the transporter LolCDE.
Nat.Struct.Mol.Biol., 28, 2021
7ARL
DownloadVisualize
BU of 7arl by Molmil
LolCDE in complex with lipoprotein and ADP
Descriptor: (2S)-3-hydroxypropane-1,2-diyl dihexadecanoate, ADENOSINE-5'-DIPHOSPHATE, LPP, ...
Authors:Tang, X.D, Chang, S.H, Zhang, K, Wang, T, Luo, Q.H, Qiao, W, Wang, C, Shen, C.R, Zhang, Z.B, Zhang, Z.Y, Zhu, X.F, Wei, X.W, Dong, C.J, Zhang, X, Dong, H.H.
Deposit date:2020-10-25
Release date:2021-04-07
Last modified:2021-04-28
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural basis for bacterial lipoprotein relocation by the transporter LolCDE.
Nat.Struct.Mol.Biol., 28, 2021

221716

數據於2024-06-26公開中

PDB statisticsPDBj update infoContact PDBjnumon