Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7VIW
DownloadVisualize
BU of 7viw by Molmil
Dark adapted MmCPDII during oxidized to semiquinone TR-SFX studies
Descriptor: DNA photolyase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
Authors:Maestre-Reyna, M, Yang, C.-H, Huang, W.-C, Nango, E, Ngura Putu, E.P.G, Franz-Badur, S, Wu, W.-J, Wu, H.-Y, Wang, P.-H, Hosokawa, Y, Saft, M, Emmerich, H.-J, Liao, J.-H, Lee, C.-C, Huang, K.-F, Chang, Y.-K, Weng, J.-H, Royant, A, Gad, W, Pang, A.H, Chang, C.-W, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Yamamoto, J, Iwata, S, Essen, L.-O, Bessho, Y, Tsai, M.-D.
Deposit date:2021-09-28
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.
Nat.Chem., 14, 2022
7VJ3
DownloadVisualize
BU of 7vj3 by Molmil
class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (400 us time-point)
Descriptor: DNA photolyase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
Authors:Maestre-Reyna, M, Yang, C.-H, Huang, W.-C, Nango, E, Ngura Putu, E.P.G, Franz-Badur, S, Wu, W.-J, Wu, H.-Y, Wang, P.-H, Hosokawa, Y, Saft, M, Emmerich, H.-J, Liao, J.-H, Lee, C.-C, Huang, K.-F, Chang, Y.-K, Weng, J.-H, Royant, A, Gad, W, Pang, A.H, Chang, C.-W, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Yamamoto, J, Iwata, S, Essen, L.-O, Bessho, Y, Tsai, M.-D.
Deposit date:2021-09-28
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.
Nat.Chem., 14, 2022
7F8T
DownloadVisualize
BU of 7f8t by Molmil
Re-refinement of the 2XRY X-ray structure of archaeal class II CPD photolyase from Methanosarcina mazei
Descriptor: Deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Maestre-Reyna, M, Yang, C.-H, Huang, W.C, Nango, E, Gusti-Ngurah-Putu, E.-P, Franz-Badur, S, Wu, W.-J, Wu, H.-Y, Wang, P.-H, Liao, J.-H, Lee, C.-C, Huang, K.-F, Chang, Y.-K, Weng, J.-H, Sugahara, M, Owada, S, Joti, Y, Tanaka, R, Tono, K, Kiontke, S, Yamamoto, J, Iwata, S, Essen, L.-O, Bessho, Y, Tsai, M.-D.
Deposit date:2021-07-02
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.
Nat.Chem., 14, 2022
2ZTS
DownloadVisualize
BU of 2zts by Molmil
Crystal structure of KaiC-like protein PH0186 from hyperthermophilic archaea Pyrococcus horikoshii OT3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Putative uncharacterized protein PH0186
Authors:Ming, H, Miyazono, K, Tanokura, M.
Deposit date:2008-10-08
Release date:2009-03-24
Last modified:2025-07-02
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of KaiC-like protein PH0186 from hyperthermophilic archaea Pyrococcus horikoshii OT3.
Proteins, 75, 2009
2BDR
DownloadVisualize
BU of 2bdr by Molmil
Crystal Structure of the Putative Ureidoglycolate hydrolase PP4288 from Pseudomonas putida, Northeast Structural Genomics Target PpR49
Descriptor: SODIUM ION, Ureidoglycolate hydrolase
Authors:Forouhar, F, Abashidze, M, Jayaraman, S, Ho, C.K, Conover, K, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-10-20
Release date:2005-11-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of the Putative Ureidoglycolate hydrolase PP4288 from Pseudomonas putida, Northeast Structural Genomics Target PpR49
To be Published
2BDE
DownloadVisualize
BU of 2bde by Molmil
Crystal Structure of the cytosolic IMP-GMP specific 5'-nucleotidase (lpg0095) from Legionella pneumophila, Northeast Structural Genomics Target LgR1
Descriptor: SULFATE ION, cytosolic IMP-GMP specific 5'-nucleotidase
Authors:Forouhar, F, Abashidze, M, Ho, C.K, Conover, K, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-10-20
Release date:2005-12-06
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structure of the cytosolic IMP-GMP specific 5'-nucleotidase (lpg0095) from Legionella pneumophila, Northeast Structural Genomics Target LgR1
To be Published
2ZUA
DownloadVisualize
BU of 2zua by Molmil
Crystal structure of nucleoside diphosphate kinase from Haloarcula quadrata
Descriptor: Nucleoside diphosphate kinase
Authors:Ichimura, T, Yamamura, A, Ohtsuka, J, Miyazono, K, Okai, M, Nagata, K, Tanokura, M.
Deposit date:2008-10-15
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Molecular mechanism of distinct salt-dependent enzyme activity of two halophilic nucleoside diphosphate kinases
Biophys.J., 96, 2009
3A9G
DownloadVisualize
BU of 3a9g by Molmil
Crystal Structure of PQQ-dependent sugar dehydrogenase apo-form
Descriptor: CALCIUM ION, Putative uncharacterized protein, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
Authors:Sakuraba, H, Yokono, K, Yoneda, K, Ohshima, T.
Deposit date:2009-10-26
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Catalytic properties and crystal structure of quinoprotein aldose sugar dehydrogenase from hyperthermophilic archaeon Pyrobaculum aerophilum
Arch.Biochem.Biophys., 502, 2010
2EQJ
DownloadVisualize
BU of 2eqj by Molmil
Solution structure of the TUDOR domain of Metal-response element-binding transcription factor 2
Descriptor: Metal-response element-binding transcription factor 2
Authors:Dang, W, Muto, Y, Isono, K, Watanabe, S, Tarada, T, Kigawa, T, Koseki, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-30
Release date:2008-04-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the TUDOR domain of Metal-response element-binding transcription factor 2
To be Published
3A9H
DownloadVisualize
BU of 3a9h by Molmil
Crystal Structure of PQQ-dependent sugar dehydrogenase holo-form
Descriptor: CALCIUM ION, PYRROLOQUINOLINE QUINONE, Putative uncharacterized protein, ...
Authors:Sakuraba, H, Yokono, K, Yoneda, K, Ohshima, T.
Deposit date:2009-10-26
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Catalytic properties and crystal structure of quinoprotein aldose sugar dehydrogenase from hyperthermophilic archaeon Pyrobaculum aerophilum
Arch.Biochem.Biophys., 502, 2010
3A2E
DownloadVisualize
BU of 3a2e by Molmil
Crystal structure of ginkbilobin-2, the novel antifungal protein from Ginkgo biloba seeds
Descriptor: Ginkbilobin-2
Authors:Miyakawa, T, Miyazono, K, Sawano, Y, Hatano, K, Tanokura, M.
Deposit date:2009-05-13
Release date:2009-06-02
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Crystal structure of ginkbilobin-2 with homology to the extracellular domain of plant cysteine-rich receptor-like kinases
Proteins, 77, 2009
3BIJ
DownloadVisualize
BU of 3bij by Molmil
Crystal structure of protein GSU0716 from Geobacter sulfurreducens. Northeast Structural Genomics target GsR13
Descriptor: Uncharacterized protein GSU0716
Authors:Forouhar, F, Neely, H, Su, M, Seetharaman, J, Benach, J, Conover, K, Fang, Y, Xiao, R, Owen, L.A, Maglaqui, M, Cunningham, K, Baran, M.C, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2007-11-30
Release date:2007-12-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of protein GSU0716 from Geobacter sulfurreducens.
To be Published
2F9F
DownloadVisualize
BU of 2f9f by Molmil
Crystal Structure of the Putative Mannosyl Transferase (wbaZ-1)from Archaeoglobus fulgidus, Northeast Structural Genomics Target GR29A.
Descriptor: first mannosyl transferase (wbaZ-1)
Authors:Zhou, W, Forouhar, F, Conover, K, Xiao, R, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-12-05
Release date:2006-06-06
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the Putative Mannosyl Transferase (wbaZ-1)from Archaeoglobus fulgidus
To be Published
1J2E
DownloadVisualize
BU of 1j2e by Molmil
Crystal structure of Human Dipeptidyl peptidase IV
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Dipeptidyl peptidase IV
Authors:Hiramatsu, H, Kyono, K, Higashiyama, Y, Fukushima, C, Shima, H, Sugiyama, S, Inaka, K, Yamamoto, A, Shimizu, R.
Deposit date:2002-12-30
Release date:2003-12-30
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The structure and function of human dipeptidyl peptidase IV, possessing a unique eight-bladed beta-propeller fold.
Biochem.Biophys.Res.Commun., 302, 2003
2FFI
DownloadVisualize
BU of 2ffi by Molmil
Crystal Structure of Putative 2-Pyrone-4,6-Dicarboxylic Acid Hydrolase from Pseudomonas putida, Northeast Structural Genomics Target PpR23.
Descriptor: 2-pyrone-4,6-dicarboxylic acid hydrolase, putative, PHOSPHATE ION
Authors:Forouhar, F, Su, M, Jayaraman, S, Conover, K, Xiao, R, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-12-19
Release date:2005-12-27
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal Structure of Putative 2-Pyrone-4,6-Dicarboxylic Acid Hydrolase from Pseudomonas putida, Northeast Structural Genomics Target PpR23.
To be Published
3OV2
DownloadVisualize
BU of 3ov2 by Molmil
Curcumin synthase 1 from Curcuma longa
Descriptor: 1,2-ETHANEDIOL, Curcumin synthase, MALONATE ION
Authors:Katsuyama, Y, Miyazono, K, Tanokura, M, Ohnishi, Y, Horinouchi, S.
Deposit date:2010-09-15
Release date:2010-12-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:A hydrophobic cavity discovered in a curcumin synthase facilitates utilization of a beta-keto acid as an extender substrate for the atypical type III polyleteide synthase
To be Published
3OV3
DownloadVisualize
BU of 3ov3 by Molmil
G211F mutant of curcumin synthase 1 from Curcuma longa
Descriptor: Curcumin synthase, MALONATE ION
Authors:Katsuyama, Y, Miyazono, K, Tanokura, M, Ohnishi, Y, Horinouchi, S.
Deposit date:2010-09-15
Release date:2010-12-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A hydrophobic cavity discovered in a curcumin synthase facilitates utilization of a beta-keto acid as an extender substrate for the atypical type III polyleteide synthase
To be Published
7CFA
DownloadVisualize
BU of 7cfa by Molmil
Crystal structure of the restriction DNA glycosylase R.CcoLI
Descriptor: R.Pab1 family restriction endonuclease
Authors:Miyazono, K, Wang, D, Ito, T, Tanokura, M.
Deposit date:2020-06-25
Release date:2020-12-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.355 Å)
Cite:Crystal structure and DNA cleavage mechanism of the restriction DNA glycosylase R.CcoLI from Campylobacter coli.
Sci Rep, 11, 2021
7CO1
DownloadVisualize
BU of 7co1 by Molmil
Crystal structure of SMAD2 in complex with wild-type CBP
Descriptor: CREB-binding protein, Mothers against decapentaplegic homolog 2
Authors:Miyazono, K, Wada, H, Ito, T, Tanokura, M.
Deposit date:2020-08-03
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis for transcriptional coactivator recognition by SMAD2 in TGF-beta signaling.
Sci.Signal., 13, 2020
8XCD
DownloadVisualize
BU of 8xcd by Molmil
Macaca fascicularis NTCP in complex with YN69083 Fab
Descriptor: Solute carrier family 10 member a1, TAUROCHOLIC ACID, YN69083 Fab Heavy chain, ...
Authors:Park, J.H, Ishimoto, N, Park, S.Y.
Deposit date:2023-12-08
Release date:2024-11-13
Last modified:2024-11-27
Method:ELECTRON MICROSCOPY (3.49 Å)
Cite:Structural basis for hepatitis B virus restriction by a viral receptor homologue.
Nat Commun, 15, 2024
7WAB
DownloadVisualize
BU of 7wab by Molmil
Crystal structure of the prolyl endoprotease, PEP, from Aspergillus niger
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COMPASS (Complex proteins associated with Set1p) component shg1 family protein, ...
Authors:Miyazono, K, Kubota, K, Takahashi, K, Tanokura, M.
Deposit date:2021-12-14
Release date:2022-01-12
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure and substrate recognition mechanism of the prolyl endoprotease PEP from Aspergillus niger.
Biochem.Biophys.Res.Commun., 591, 2022
8IB1
DownloadVisualize
BU of 8ib1 by Molmil
Structure of the LAH31 Fab bound to an influenza virus HA epitope peptide
Descriptor: Hemagglutinin HA2 chain, LAH31 Fab heavy chain, LAH31 Fab light chain
Authors:Suzuki, T, Hashiguchi, T.
Deposit date:2023-02-09
Release date:2023-07-26
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for cross-group recognition of an influenza virus hemagglutinin antibody that targets postfusion stabilized epitope.
Plos Pathog., 19, 2023
5XOD
DownloadVisualize
BU of 5xod by Molmil
Crystal structure of human Smad2-Ski complex
Descriptor: Mothers against decapentaplegic homolog 2, Ski oncogene
Authors:Miyazono, K, Moriwaki, S, Ito, T, Tanokura, M.
Deposit date:2017-05-27
Release date:2018-03-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.851 Å)
Cite:Hydrophobic patches on SMAD2 and SMAD3 determine selective binding to cofactors
Sci Signal, 11, 2018
5XOC
DownloadVisualize
BU of 5xoc by Molmil
Crystal structure of human Smad3-FoxH1 complex
Descriptor: Mothers against decapentaplegic homolog 3, Thioredoxin 1,Forkhead box protein H1
Authors:Miyazono, K, Ito, T, Tanokura, M.
Deposit date:2017-05-27
Release date:2018-03-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Hydrophobic patches on SMAD2 and SMAD3 determine selective binding to cofactors
Sci Signal, 11, 2018
6L2N
DownloadVisualize
BU of 6l2n by Molmil
Crystal structure of the R.PabI(Y68F-K154A)-dsDNA(GTAC-3bp-GTAC) complex
Descriptor: DNA (5'-D(*TP*CP*AP*GP*CP*AP*GP*TP*AP*CP*TP*AP*AP*GP*TP*AP*CP*TP*GP*CP*TP*GP*A)-3'), RE_R_Pab1 domain-containing protein
Authors:Miyazono, K, Wang, D, Ito, T, Tanokura, M.
Deposit date:2019-10-05
Release date:2020-03-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Distortion of double-stranded DNA structure by the binding of the restriction DNA glycosylase R.PabI.
Nucleic Acids Res., 48, 2020

238895

數據於2025-07-16公開中

PDB statisticsPDBj update infoContact PDBjnumon