Crystal Structure of PQQ-dependent sugar dehydrogenase apo-form

Summary for 3A9G

Related PRD IDPRD_900006
DescriptorPutative uncharacterized protein, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose, CALCIUM ION, ... (4 entities in total)
Functional Keywordspqq dependent dehydrogenase, aldose sugar dehydrogenase, beta-propeller fold, oxidoreductase
Biological sourcePyrobaculum aerophilum
Total number of polymer chains1
Total molecular weight39096.28
Sakuraba, H.,Yokono, K.,Yoneda, K.,Ohshima, T. (deposition date: 2009-10-26, release date: 2010-09-08, Last modification date: 2020-07-29)
Primary citation
Sakuraba, H.,Yokono, K.,Yoneda, K.,Watanabe, A.,Asada, Y.,Satomura, T.,Yabutani, T.,Motonaka, J.,Ohshima, T.
Catalytic properties and crystal structure of quinoprotein aldose sugar dehydrogenase from hyperthermophilic archaeon Pyrobaculum aerophilum
Arch.Biochem.Biophys., 502:81-88, 2010
PubMed: 20692227 (PDB entries with the same primary citation)
DOI: 10.1016/j.abb.2010.08.002
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.2328 0.6% 8.4% 5.6%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
PDB entries from 2020-10-21